Array 1 448250-449498 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJGFJ010000001.1 Escherichia coli strain PLATE2_C3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 448250 29 96.6 32 .....T....................... CAATTCCCGCAGCGCCTGCCGCAGTATTCACC 448311 29 100.0 32 ............................. TTGAACGATTTTGACCTGCGCCGTTTTGAGTC 448372 29 100.0 32 ............................. CTGACGCAACGATTGACCGTGCCGCCGGGTTG 448433 29 100.0 32 ............................. CCGCCGTTATATGGAGCGATTCCGGTTTGGTA 448494 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 448555 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 448616 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 448677 29 100.0 32 ............................. CGAATTTTGCACACTACGTCGCTGAGGGTAAA 448738 29 100.0 32 ............................. CGAATTTTGCACACTACGTCGCTGAGGGTAAA 448799 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 448860 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 448921 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 448982 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 449043 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 449104 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 449165 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 449226 29 100.0 32 ............................. CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 449287 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 449348 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 449409 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 449470 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 475201-475960 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJGFJ010000001.1 Escherichia coli strain PLATE2_C3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 475201 29 100.0 32 ............................. AGCGAACCACGCTGGCTTACTGAAGCTCATAA 475262 29 100.0 32 ............................. CGAATATAGACCGGATACCCAACGTTTTTTAA 475323 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 475384 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 475445 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 475506 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 475567 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 475628 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 475688 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 475749 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 475810 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 475871 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 475932 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 168585-167536 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJGFJ010000008.1 Escherichia coli strain PLATE2_C3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 168584 28 100.0 32 ............................ GGATGCTTTGTGCAGGTCATTAATAGAATAAC 168524 28 100.0 32 ............................ GTATTGCCTGACTATTTCACGCAACAGATCGC 168464 28 100.0 32 ............................ TCTAATATTTCAAAACCCCAACGACTGCCAAT 168404 28 100.0 32 ............................ ACAGGCACCCGGCTGATGTTCGTAGGCGACAT 168344 28 100.0 32 ............................ TGGTGGCCGGAAGAAGCTGATCACATCATGTT 168284 28 100.0 32 ............................ CACATTATGAATCACACGATGGCGATGCGTGA 168224 28 100.0 32 ............................ ATCACATTTAATTCCGTGTTTCGTTTTGAACA 168164 28 100.0 33 ............................ GGTACTAAATGCGATGATCACCCCGAGCGTGAT 168103 28 100.0 32 ............................ CACCGGGCCTGCTCAGTCGCGCCGACGTCCTG 168043 28 100.0 32 ............................ AGTTGAGTAGCGTGGGACGCGATACGCCCAGC 167983 28 100.0 32 ............................ ATCCTGATAATTCAAGTCTGTGATTACCAGTA 167923 28 100.0 32 ............................ TACTTGTGCTGAAGCACTGGCATCCAGAATGC 167863 28 100.0 32 ............................ AGTACGCTATTACGCTACCCTACCCAAAACAC 167803 28 100.0 32 ............................ ATGTTTATTCCCTGATTAATGACGCCGTGTTA 167743 28 100.0 32 ............................ ACATCGTTTACTCCGTTCGCCGCGTTAATGCG 167683 28 100.0 32 ............................ ACATTGATCAGGTTATTTCAAATACGCCCGGC 167623 28 96.4 32 ..........................G. AGCAAGCTGTCTCGCCCCTTCGGGCTTCCAGC 167563 28 85.7 0 ..G.................T..TC... | ========== ====== ====== ====== ============================ ================================= ================== 18 28 99.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTTTTATGTGCTCCGTGACTGACACACACAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATGAAGAAATACCAAATCGACCCTTTTTTTAGGGCGAAATGTAACTCATTGATTTTATTTATTTCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAACTTTTAACAATAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : CTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCACAGACGCAAAAAAGGTCGGCTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 178516-177646 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJGFJ010000008.1 Escherichia coli strain PLATE2_C3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 178515 28 100.0 32 ............................ ACATCATGAACGCGCAGCAATATGCCGCAATT 178455 28 100.0 32 ............................ CGGCAGAAAAACCGGTCGCGCTAATGGAGAAA 178395 28 100.0 32 ............................ GCCGCAACTCACAATAACAGAATCACAAATTA 178335 28 100.0 32 ............................ TGCCAGATATTTCAGATCATGAACGGTTGCGC 178275 28 100.0 32 ............................ AGGAAATTTCCGGCGACTAACGAAACAGGTTG 178215 28 100.0 32 ............................ GTCATCGGTATCGTCACGCGCAAGGGATTCAA 178155 28 100.0 32 ............................ GTTGTAATTTTCGTACCCGGCGCGATCGCAAT 178095 28 100.0 32 ............................ AATCGTAGGGCACACCCTTACGGCAGTTAAAA 178035 28 100.0 32 ............................ AATCAGCCCGATCACTGTGCTGCGCCCCGCTC 177975 28 96.4 32 ......................C..... TCATTGGAATACATGAGTTGCGCCCATTTTGT 177915 28 100.0 32 ............................ TGGCATGCAATCACTACAGCTATTAATTTCTA 177855 28 96.4 32 .................T.......... TGAACGCGATCCGGGCGATTCGGGAGTTTTCG 177795 28 100.0 32 ............................ TTCACCGAGTGGGTGCTCGTGCTGAATGAACT 177735 28 92.9 32 ..................C.T....... CACATATACGCGAACGTCATTTTGCAGTAGCA 177675 28 85.7 0 ....................T...C.CT | C,A [177649,177652] ========== ====== ====== ====== ============================ ================================ ================== 15 28 98.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGCTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTTAGGTAGGTTGGTCAAGTCCGTAATCTCGAAAGAGGTTACGGACTTTTTGTTTATGGGGTGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGGTAAGTTGTTGATAATTAGTGCTGCGGGAAGGTAAGGATAAAAAAGGGTGCTGCAGGAGAATGGGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ACGATAGTGTTAGGCATTTGGTCATGCCATGACACTCTCAACTTCAAACCATTAGCTTCAGCACACAATAACAATCGTAATAATTGCGACAGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTTCAGGTGAATGGTGGGCGGGTGGAGTATGTCACCAGCGAAGGTAAGGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCATTGATGTTGGGGATGGGAACATCCGTTACCCAGGCGGCGATGCGTGAATTTGCCCATGCCGGGGTGATGGTGGGCTTTTGTGGTACGGATGGTACGCCGCTGTATTCAGCGAATGAAGTGGATGTCGATGTCTCCTGGCTCAGCCCACAAAGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //