Array 1 1033096-1034343 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAETNI010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 19SE 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1033096 29 100.0 32 ............................. AATACTAGCCTGCAATGCGCTACCACGTTACT 1033157 29 100.0 32 ............................. TGATAACGCATGGGAGTCCAGATTACAAATTC 1033218 29 100.0 32 ............................. TGCTGGATACACGCGTTTCAATGGTCAGAGTT 1033279 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 1033340 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 1033401 29 100.0 32 ............................. CGTTTATGAGATTGTGAGACAGCTTGATCCTG 1033462 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 1033523 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 1033584 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCAGACCGATCGACTA 1033645 29 100.0 32 ............................. TCCGCGGTGATAGTATGCGGGGAACTATAGAC 1033706 29 100.0 32 ............................. GGAAACGAAGATGACCTTTATTAGAGATATCC 1033767 29 100.0 32 ............................. TGCTGAATCTTTGCGAGTGGGATGATGGCACT 1033828 29 96.6 32 .....T....................... CCGCTACGATCTATTCGAATCATAGTGGTGCG 1033889 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 1033950 29 100.0 32 ............................. TCCTTTTATTCTAATGGGTTAGATAGGGTAGA 1034011 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 1034072 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 1034133 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 1034194 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 1034255 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 1034316 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGAAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1050514-1051949 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAETNI010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 19SE 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1050514 29 100.0 32 ............................. AGTTTATTACCCCGCCATTTTTCAGTCGTCGC 1050575 29 100.0 32 ............................. CGGTACGACGTAAACTGCGCGCCCGGACTGAT 1050636 29 100.0 32 ............................. AAGCCGGACCACATTTTTCTTGCCGAACTCAC 1050697 29 100.0 32 ............................. GCTGTTGCCGACGTCGGGCTTAAACACCACTG 1050758 29 100.0 32 ............................. GACGCTTCACCTGCATCAAATTCTCCTCCAGT 1050819 29 100.0 32 ............................. GCGGGCAACAATTTTAGAGGGGCTGCATTCGC 1050880 29 100.0 33 ............................. ACTACATAGATAACCAAAAATCCACTGGCAAGC 1050942 29 100.0 33 ............................. CGCACGCGGGTTGCGTAACGGATATACGACAGC 1051004 29 100.0 32 ............................. TCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC 1051065 29 100.0 32 ............................. TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 1051126 29 100.0 32 ............................. GGACAGCACAGTTGATTACAGCAAAATTTACG 1051187 29 96.6 32 ............T................ ACACGCCAGCCAACAATATTAATTTTGTCGTC 1051248 29 100.0 32 ............................. CCTTGGCGGCAGCCACCTGAGCAACTGTCGGG 1051309 29 100.0 32 ............................. CAGCTTCTTAACGAGGAGATTAACAGCGACGT 1051370 29 100.0 32 ............................. TTAATGCGGTCATTGGTCATGTCTCTAAAAGA 1051431 29 100.0 32 ............................. ACTGTAGTTGCGGGTCAGGTTCCGGAATATCA 1051492 29 100.0 33 ............................. GGATAGGGATCGGTAACTTTGCCATCGATCGGC 1051554 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 1051615 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 1051676 29 100.0 32 ............................. CACCCAGCGGGTAAACTGATCAGCAGCAGCAC 1051737 29 100.0 32 ............................. AACCCTCAGAAAATAATCCAGACGTTACCGAA 1051798 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 1051859 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 1051920 29 93.1 0 A..............A............. | A [1051946] ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAATCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGAAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //