Array 1 8462-7214 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYWN01000035.1 Salmonella enterica subsp. enterica serovar Montevideo strain 11TTU2744b NODE_35_length_53234_cov_24.2309, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8461 29 100.0 32 ............................. TTGAAGACCGCGCTGATGCAATCCGCCAGGCG 8400 29 100.0 32 ............................. TCGGCATTGATCTTGTTCAGTTCAGCCGGTGA 8339 29 100.0 32 ............................. TGACCACAGGTTTTTCGTCTGCTGATGTCGGC 8278 29 100.0 32 ............................. GACAAGCTGGAACGTGATCGGCTTACTGATGA 8217 29 100.0 32 ............................. CGCCGTAAATTGTGGTACGTCGTGACTACAGA 8156 29 100.0 32 ............................. GCGACCTGCTCGACAGCATTCAGTTTGTTGTT 8095 29 100.0 32 ............................. GCAGCCGTGCGCAAGCGTGGCCTGACGATGAG 8034 29 100.0 32 ............................. TGCTGTTTGCAGACCACACAGGCGACAAATTC 7973 29 100.0 32 ............................. AGGGTGAACGAAGTCACTCTTAAATTTCTGAA 7912 29 100.0 32 ............................. TATGAATTTAATGTTTATCCTGGGCGCTATGA 7851 29 100.0 32 ............................. GTTAGGGAAGGTACTCCTGGCTAATTCTTTTG 7790 29 96.6 32 ............................A TTAGTATCAGTATAAATAACCACGTATTCACC 7729 29 100.0 32 ............................. TATGAGCCGATCTGGAACGTGAGCGCTGAAAC 7668 29 96.6 32 ....A........................ AGTTCGGCAGGTTTTAGTTCCGTCGCGTTTGC 7607 29 100.0 32 ............................. AAAATATAAAGTATGTTTTGTTTAATTCTAAA 7546 29 100.0 32 ............................. GCAAAACTCCCCAGATACCGCGCATCGGCACT 7485 29 100.0 32 ............................. ATAAATTATCGGGAAATCATAATCAGCGCCGC 7424 29 100.0 32 ............................. TCGAGTTCTGGCACGTCAGACTGACGTATCGC 7363 29 100.0 32 ............................. AAAACCCTCAAATATGCGTAACGGGAGGCTGG 7302 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 7241 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCACGAAGTGCGCTGTACGCCTAACACCTGGGTAACGGTTTCACCAAAAGTGAATATGCGCGGGGGATATGACGTGCTTTCCCAGGCGCTGGAGCGCGCCAATGAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATGCATTACTAATTTTACGGACGGCCTGCCGATGCCGTCTGTGAGTCATCCATTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 33967-31863 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYWN01000043.1 Salmonella enterica subsp. enterica serovar Montevideo strain 11TTU2744b NODE_43_length_43524_cov_25.0124, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 33966 29 100.0 32 ............................. CCCTGGTTAATGATGGTTGTCAGCTTAGCCAG 33905 29 100.0 32 ............................. GTGGCAGCTGAGAACCCGGAGGTTATCCGGTG 33844 29 100.0 32 ............................. GTGCCGTGTTTGAAATTCCCAACGATACGTTG 33783 29 100.0 32 ............................. GCGCGGCTCGCATGTCAAAAATTGTCGATACT 33722 29 100.0 32 ............................. TGGCAAACGAAAGGCCATGTTGGCATAAGTAG 33661 29 100.0 32 ............................. ACGTATTACGTTTATGTCCGCACCAAAAATGC 33600 29 100.0 32 ............................. AGACATCAATTACTCAGGACGGGATGATGTTT 33539 29 100.0 32 ............................. TATGCTGAATTACAGGAAGGCAGGAAGTACGC 33478 29 96.6 32 ............................T TACCTGGTTGAATTCGGTCTGACTCCGGCCGC 33417 29 100.0 32 ............................. GCGCCCGCGGCGATTTAGCATAATCTGCAGTT 33356 29 100.0 32 ............................. GAGGGGGTTTCTTCATCGTCTGATGAAAACGG 33295 29 100.0 32 ............................. TCGGATGCATTGGGAGCGGGATTGCCGGAGCC 33234 29 100.0 32 ............................. GCTTCCCAACCTACCTGGAGCCAGGCGCGTTC 33173 29 100.0 32 ............................. CGGGCGCGGTCGAGAAACCATGCCTGCTGATA 33112 29 100.0 32 ............................. CCATATACAGTGGCGAAATTCCTTTTCCTCTT 33051 29 100.0 32 ............................. CGCAGGCAACGCTTCCCATTCCTCCTGCGACA 32990 29 100.0 32 ............................. CAACAGCCGGGAAAATGAAGGCTGAAGGGCAA 32929 29 100.0 32 ............................. AATCTAATTATGACGGCAAGGCGACTACTAAA 32868 29 100.0 32 ............................. AATAATCACATCACCATCACGCGCGACAACAT 32807 29 100.0 32 ............................. CGGTCTCCAGATAATAGCCGATTTATTTAAAA 32746 29 100.0 32 ............................. GCCCGCATTAAGCCGCTGACGCACTGGATCAA 32685 29 100.0 32 ............................. CGCTCGCAATCGAGGTTTGCGCCGAGTTGCGT 32624 29 100.0 32 ............................. GGCAATCATTAACAGCGCCGTTAATTCAGCGA 32563 29 100.0 32 ............................. GGAGACGAGAAAATCTTTAATAGTCTCAGCGT 32502 29 100.0 32 ............................. GATTGGCCCTTAGATAACGGGAGATCAAGCGC 32441 29 100.0 32 ............................. CATAACCTTCGCTACCACACTTGCCGGTACTT 32380 29 100.0 32 ............................. CCTTGAGGTTAGGGGAGTCAGGAAATTGCATT 32319 29 100.0 32 ............................. ACAAAATCGGCGGCCCAATCGCCGGCGCTGAC 32258 29 100.0 32 ............................. GCCTGCCGTCTTTTTATTGAGGTCTGTAAACC 32197 29 96.6 32 ............................T TAATCATTTTGTTTAAATCCCGGATCACCTCC 32136 29 100.0 32 ............................. GAGTTATTGTCACTCGTCAGTGATAATTTTCT 32075 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCATGGGGCAAAGC 32014 29 100.0 32 ............................. GTGAGCTCGGTTTTAATTTCGTCGCTAAGGTG 31953 29 100.0 32 ............................. CAAAAGGCCGACAGTGTGTACACCTCTAAAAA 31892 29 96.6 0 ............T................ | A [31865] ========== ====== ====== ====== ============================= ================================ ================== 35 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAATTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGTTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGTGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //