Array 1 1067-62 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGRW01000040.1 Treponema saccharophilum DSM 2985 Tsacc_Contig226, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 1066 31 100.0 35 ............................... GCGCCCGACTTGACGTCGTTTACAAGCCCCTTTGC 1000 31 100.0 33 ............................... ACGCAGAAAGCGAACGCGCTGCCGATTCGGATT 936 31 100.0 35 ............................... ATCGAGTCCGTGAACACGGTCATCTGCACGATAAG 870 31 100.0 34 ............................... TCAAGCCCCTCGGGGACGCGAACGTAGAGGGCAC 805 31 100.0 34 ............................... TCTTTTACCGTTCCCGAAAATTATACGGGTGGAT 740 31 100.0 34 ............................... TTGACGAGACGGTAAGATGAGCGGGAAGCGTGAC 675 31 100.0 33 ............................... AATTCTCGGGGGTGGGACGCCGGAACCGCTGAA 611 31 100.0 34 ............................... CGTTTTGGACGCGAGAAGCGAGAACGCGAAACAG 546 31 100.0 35 ............................... ATTTTGACGGGTGAAAAAATTTTTTTGTTGTCAAG 480 31 100.0 32 ............................... TTGCCGTCAGCGGAAAGCGCCCTTTCGGCGCG 417 31 100.0 34 ............................... TGAAAAAACGCATTGACCGCGATAAGGGCGACGA 352 31 100.0 32 ............................... CTGTTTGGTTTAAAAAGAGGGACTACAGCGAC 289 31 100.0 35 ............................... CGTATAGAAAGCCGTCAAGTTATCCCACGACCGAG 223 31 100.0 35 ............................... CTTTTACTAACCATTTTTTACCCCCCGCCCGGCTT 157 31 100.0 34 ............................... CAAACTGATTTCTTCTACTAACCATATTCATTCA 92 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================== ================== 16 31 100.0 34 GTCGCACCCTCACGGGTGCGTGAATTGAAAC # Left flank : GAAATAGGAGGCGTTTTATGATGATGCTTGTGAGCTACGATGTCGCCCGTGACGAAAAAGGTGAGAAGCGGCTTCGACATGTTGCTAAAATCCTTGAAAACTACGGGCAGCGCGTGCAGTATTCTGTTTTCGAGTGCCTTGTTGAGCCTTCTCAGTGGGTCGAGTTGAAGTCGAAACTGCTGAGCGAGATTAATCCCGATTACGACAGTCTCCGCTTCTACTCGCTCGGAGCGAACTGGCAACGTAAAGTGGAGCATGTCGGTCAGAAGAAGTCTATGAATCTTCAAGACGATGTCCTGATTCTCTGAATTTTTGCTCGTCTGTAAATGCTGATGTCTCTTTTTTTTAAAGAGATATGAATTGAAACTTGCGAACCTACAGTGAACATGTTTTGGGATGTCTTGTTTCTGCGGTTTTTCCTTTGTTTTTTTGTAAAAAAACAGGGGTTCGCAAAATCCGTGTTCTTTTCCCTTTCCCAGCAATGCTGTAAACTATATGCC # Right flank : CAAAGAGGGGCTGACGCACAGAAAAACTGTTCGTCGTCGCACCCTCACGGGTGCGTGAATTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.60,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 37-3446 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGRW01000050.1 Treponema saccharophilum DSM 2985 Tsacc_Contig236, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 37 31 100.0 34 ............................... CCGTCCCGTTGACGTCTATCGTGTCATACTTGAC 102 31 100.0 36 ............................... AACGTCTTCCCCCACAACACCGAATAGAGCGGTTGC 169 31 100.0 37 ............................... GTCCATGCGTGCGGTTACGTGGTGCGCCCGTCTCGGT 237 31 100.0 36 ............................... AAAAACTACTATGCGACATCGAACACAATATATGTC 304 31 100.0 32 ............................... ACGTCCGACTACGCGATAACGCGCGTGTCAAT 367 31 100.0 32 ............................... ATCCGACGGCATGACGTTCATCCCGCACACCA 430 31 100.0 32 ............................... GATTCCGCGGAAAGCGTGTCCTATGAGTGGAG 493 31 100.0 34 ............................... GTCGGACTCTTTCAGCAATGCGGTATATATCGGC 558 31 100.0 34 ............................... TCAATCCCGCCGATTTTCTCGCTGATGAACGCGC 623 31 100.0 34 ............................... AAAATCATCTGAACCACCCTTTAATTTTTGCAAA 688 31 100.0 33 ............................... AAACTTCGTGGACTCCATCGAGACGCCCGCAAG 752 31 100.0 34 ............................... CCGTAGGTTTCGCAGTGGTGTACCGACGAATGAG 817 31 100.0 35 ............................... AAAAGCGTCGTCGCGCTGAAGTGGTTCGGCTTGTT 883 31 100.0 34 ............................... ACCTCCATTACATTAGCAAGATGTATCGCATATA 948 31 100.0 35 ............................... AGCAGAGCCTATCATGATATTGCCTTTATTTTGCC 1014 31 100.0 34 ............................... TAACACTCACATATGACGAAAAACACGTACCATA 1079 31 100.0 35 ............................... TCGAATATTCCGACTACATCGCGGGCGTCTCTATG 1145 31 100.0 34 ............................... TCGTCTGACTACATCGAGCAGTTGTATGCCAATA 1210 31 100.0 32 ............................... TCGGAGATGGAACGGCGAAGCGCACCCGTATC 1273 31 100.0 34 ............................... CGGCCGGAGAGACGGAGGGCACAATTTGCGTGCA 1338 31 100.0 32 ............................... GCGTTCGCGTCCGAGACCGTGAAAATCGGCGC 1401 31 100.0 34 ............................... CTCCTCGTCGAGGGCTTCAGCCTGCAACACGCGG 1466 31 100.0 34 ............................... TACAATAAGGGAAGCTCGATTCTTTCTGATTTCG 1531 31 100.0 32 ............................... TTTCATCTTCGCAGACGACGCTTTCCGCTTTC 1594 31 100.0 33 ............................... TATCTGGTGCTGGTTCTCGTTGAGATACTGTTG 1658 31 100.0 35 ............................... TCCTACTGCCAGGTATTTGAATTTTGCTGTGTTTC 1724 31 100.0 33 ............................... TGTCCGTGTCGCTTTTGATTTGTCGTTCTTTGC 1788 31 100.0 36 ............................... TGATATGTCGATTTCTGCCTGTCTTAAGTTCTCCAG 1855 31 100.0 35 ............................... CTTCGCGCGACATCTCGATTGATATGTCGTATCCG 1921 31 100.0 34 ............................... CGGATGACGGCACGCGAAGTCATGCTCCGTAATA 1986 31 100.0 33 ............................... CGCGAATCAGAACGCGCTTGTCGAGGCGGTGAA 2050 31 100.0 35 ............................... TTGAGCAACGACGAGTTGCTTGCAAGCGCGAAGGA 2116 31 100.0 35 ............................... TACGGGATAATCCTCGGAAACACGAACGCGTTCAA 2182 31 100.0 33 ............................... TACCAACGTATGAACGGAAACTGAATCTTTCGG 2246 31 100.0 34 ............................... GTGTAAGACGCTGAAAAAGTTCCATCCGCTTTTG 2311 31 100.0 34 ............................... ACACAACTCGCACAACTCAAACACGACAGCAAAG 2376 31 100.0 33 ............................... ACGACATGGACAAAAAATTTCAAGAACTCTGGA 2440 31 100.0 34 ............................... TTGAAAACGCAAATGTTCCGTTCAACGATGTCAA 2505 31 100.0 33 ............................... CATGTCTTCACCTCCGTTTTTTTGCAAAGTATA 2569 31 100.0 34 ............................... ACATTTCGCGTCCGCACATCTCAACGCAAGCGCC 2634 31 100.0 36 ............................... AGCGATGTCAAGTGGCTTTTGAACCCAATCGGCAAG 2701 31 100.0 35 ............................... TGTTATCGCGCGGAGGTCACGGACGCGGGCGCGGT 2767 31 100.0 33 ............................... CGGAGAGTATGGCGGCCGCACATTCCGCAAGCA 2831 31 100.0 36 ............................... TCCGGATTCTTCCGGCTTTATTGCACGCTCAAGCGC 2898 31 100.0 34 ............................... CCTATCGGCTCCTTTGGAGCCGCTCTCACGATGC 2963 31 100.0 35 ............................... AAAGTGCAAATTGCGTCAAAAGTGACCGCCACGAG 3029 31 100.0 33 ............................... CTTTTCCTCCTCCTCCGTTGTGGCGGGTAGTGG 3093 31 100.0 35 ............................... TTTATGTTATCAGTGGGAGCGTGGATTATTTTCAC 3159 31 100.0 33 ............................... CTTATCGCCTCCTCTGGAGCCGTGAGCATTATG 3223 31 100.0 34 ............................... ATGGTCATGATACACTCTCCTCTGTAACGTCAGC 3288 31 100.0 32 ............................... ATAGTGAGATTCTGACCGACGCCATAGACGTC 3351 31 100.0 34 ............................... CGTGAATTGCGTTGTATGAAGCGCAAGCATATTT 3416 31 93.5 0 .......A...........A........... | ========== ====== ====== ====== =============================== ===================================== ================== 53 31 99.9 34 GTCGCACCCTCACGGGTGCGTGAATTGAAAC # Left flank : ACCCCGCAAACGCGAAGGTCGAGACGAAAATCGGGGG # Right flank : CGAAGAAGCAATATTTCTTGCGGAAGCCGTTCACCATGAAAAGAGCTGCGTCAACCGTTTTCCGGACGGAGCCGAATAAAAAGGACTGCACGGAAGCGTGCAGTCCAAAAATGCTTAGGATCGGCATTTAAAATACGTGGCTTTCCCTTTTTTTGTGGGAGATATAATAGCCGTTCAGTTTTGAAACGGCTTCTTCTATCTCAAAGGGGGCTTCTAAGCAGTTCACCTTGTTTTCCTGAAGCAGGCGGTGGGGCTTGGGGCCGATTTTAGCAACAAGGAAATAGGTACAGTCGCTTACGACCTCTCCGACCTTCACCGCAAAGTTACTTCCGCAGGAGCAGCCGCTTTCACATTCCTCCTTTTCGGGGTCGCGGGTTATTTTCCGCTCTTCCAGAAAAGAATAGCTTCCGTCGCTTTCGTTCACCTCGTAAACTGAAACTGATTCAATTTCACCGAAGTGAAGGTTTACGCTCTTTTTGTCAGAAGTTCCGATTGCAATT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.20,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.15,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //