Array 1 60150-60554 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKEH010000014.1 Desulfovibrio sp. ZJ200 Scaffold14_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 60150 35 100.0 40 ................................... ACTATTAAAGTCCGGTTCTATCCACCAATACGCATAACGA 60225 35 100.0 39 ................................... CGGCCAATCGTCGTGTCGAACACGTCGCCCTCTTTGGCG 60299 35 100.0 39 ................................... CGGCCAATCGTCGTGTCGAACACGTCGCCCTCTTTGGCG 60373 35 100.0 38 ................................... TAGTTGAAAACCTGTTCTGCTTCTTCTTCGGAGCAGAA 60446 35 97.1 39 ..................................T CTCAAATAACTCAAATAACTACTCACATTCTTACTACTC 60520 35 97.1 0 .......C........................... | ========== ====== ====== ====== =================================== ======================================== ================== 6 35 99.0 39 GTAAGAAACGACCTGAAATAGAAAGGGATTAAGAC # Left flank : GGAGGGTGACTTGCGGGTAAAGGCGGCGGCTGCCTTGCGTGACTGCTGGCAGCGCCTGGGCAAGTGGCAAGGCAAGCTCTCCCAGAAACAGCAAAAGAAAGTCGCAAAAGTAAAACAGCTTCTCGGCGAGTAGCGCGAACCGTGGCTGTCTTCGGTGGGTTTTGCCAACCTGTTGAAATGAATGAAGATGGCGCGTCTGTCCCAGAGAGGTTCGCGCAAGGAAAAGAGTTTTTTATTTCAGTAGGTTGGCTTGACATGTTCGCCTATGCACGGCTGAAGTTTCATCGTTGCCCTGGAGCGTTTTGCTCATGAAATGAGCGAAACGCTCTGGCGACAGCGTGAGCTGGCGCCCGCGCCGAATGAGCGTCCAGACCGCGTTCTGGACGCGAAATGATGGCGGCGAAGTGATTGAAAATGAATATTTTCAATCAAAAAATGCTCTGAAGGTTCGCGCAAGTCAGACAGCCAGGTGCTGTGGAAAAAGGAGTGAGAAGGGAGGA # Right flank : GCTTATCTGCTCTAGTTTCGACTTGATCTGACAGTACCCCTTGAAAAGGAAAGGGAACTCCGTTTTGATGGAAGTGTAAGCAACCCATCAACCGGGCGTCATGCCCAAGGAGTTCCCGATGCAAAGTTTCAACCAAAGCGTCATCAAACACAAGACCGGACTT # Questionable array : NO Score: 3.01 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAGAAACGACCTGAAATAGAAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.10,-0.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 621-4801 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKEH010000085.1 Desulfovibrio sp. ZJ200 Scaffold82_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 621 29 100.0 32 ............................. CGATCCCTTCGCCAAAGAGCGCGTGGCCGCCG 682 29 100.0 32 ............................. GTGGTATTCGGGGCCGGGACGCTGTGTTTGTC 743 29 100.0 32 ............................. TTTATTTCTCATTGTCCAAAGAGGACACTCTT 804 29 100.0 32 ............................. GACTCGGTCGTAACTCTTGATGTGTGCGTGAG 865 29 100.0 33 ............................. GATATTTCCGATAAGCGCGCCCAGAGAGGTCAG 927 29 100.0 32 ............................. ACGGATATTGCCATGCTGCGGGACGCAGGATT 988 29 96.6 32 ............................T GAAAAGCTGTTGAAGGGATACAAGCGCGTAGA 1049 29 100.0 32 ............................. GACGACGTGTTGATAACGCTCAGAGTATCAGC 1110 29 100.0 32 ............................. CTTGGTTTTTCCTTTCGGTCGCTTATGGGGAA 1171 29 100.0 32 ............................. CGTTACACCCCGGACGACTACGACCCGGACAC 1232 29 100.0 32 ............................. GTTGCTTCAGGCTGCCGTCAAGCTCAATAATC 1293 29 100.0 33 ............................. CCCTTCTGGCCTGCTCAAGTGAATCTCTGTCTA 1355 29 100.0 32 ............................. ATCACCAAAATGCGTGTCCCCACCACGAGTTG 1416 29 100.0 32 ............................. GTCACGTTTTGGCCGTCAATGGTAGCAAGGCC 1477 29 100.0 32 ............................. TATCCGGGCGGAGAACGTAACGGCGGATAAAA 1538 29 100.0 32 ............................. GGCACCAGGTCGTGCAAGCTCCGGGATATACC 1599 29 100.0 32 ............................. GCCGCCGAACAACAGCCCGCGCCGCCTATTTT 1660 29 100.0 32 ............................. CGCCCGAGGCGCGGGAGATGATGGAAACCACC 1721 29 96.6 32 ............................C CGACAAAATAGCCTTCTTCCGGCTCGTGTGCC 1782 29 100.0 32 ............................. CGTGACGCAAAGCCCTGCGGCGTTAAGGTTCA 1843 29 100.0 32 ............................. GACGGCGGCCAGAAACCCGACCAGCACATCCC 1904 29 100.0 32 ............................. GTACTACCCCAGCCGCATGGGCTGTCCATCAA 1965 29 100.0 32 ............................. CCCCGCACGCAGCCCGAAAGCGTCACCACGCC 2026 29 100.0 32 ............................. GTGGCCTGCGCCGTGGAGCCGCCTTCCCCGCC 2087 29 100.0 32 ............................. GCGAGGTCGCTTTCCTCGCGCTGATCCTGCCG 2148 29 100.0 32 ............................. GCATGGAGATCTCTTCATACAAGGCTGAAAAA 2209 29 96.6 32 ............................A GGCTGACTGGTTAGCTCAAACGGCGGCCAACA 2270 29 100.0 33 ............................. AAATGCTTCCCATAAATGGGACATAACCAGATC 2332 29 100.0 32 ............................. ACCGACGACGATCAAAATGATGGCACATGCCA 2393 29 100.0 32 ............................. GGCATTTACGCCAGCGATAACAGACTGCGTCA 2454 29 96.6 32 ............................T ATGCCTGCCAGCGGGTATGTGTCGCTTGAGGC 2515 29 100.0 32 ............................. CCCATTTCCCTGAACTGCGCGGAAAAATCTAC 2576 29 100.0 32 ............................. GACGACGTGTTGATAACGCTCAGAGTATCCGC 2637 29 100.0 32 ............................. CGATCGCAGCAAGAATTGTTGCCGGGTTCAAC 2698 29 100.0 32 ............................. TCCCGGTATCAGGTTCACAATCATGGGTAGCC 2759 29 100.0 32 ............................. TCCCGGTATCAGGTTCACAATCATGGGTAGCC 2820 29 100.0 32 ............................. ATTCCATCAGCTTTTGGGCCAGGTTCCAGGCT 2881 29 96.6 32 ............................A ATGATTGCCACAAACACGACCGTGCCCCATGT 2942 29 100.0 32 ............................. CCGGGATATGCCGCTCATAACCGAAGACGGTC 3003 29 100.0 32 ............................. CTCTTTGCTTTTTTCAAATGCGCTTTTATGGT 3064 29 100.0 32 ............................. TGACGGGGACTTTGTAGCCCTCATATCCGCGC 3125 29 96.6 32 ............................T TTTGCATACATTGAGCCTTGCTTGCATATTTT 3186 29 100.0 32 ............................. GCTGAAGCCGCGCCCATTTTTGACGCGACGAC 3247 29 100.0 33 ............................. GAGATAAATCATGGAAACAATGGGCTTTTATGA 3309 29 96.6 32 ............................A TATTGTGCGCGTCAGTATAGCGCGTTGTATGC 3370 29 100.0 32 ............................. CGTCCTTGCCGCCTGAGAACGATAGTAATACA 3431 29 96.6 32 ............................T TGGTCGGGACTTGATTCATGCTGGCATTGCCG 3492 29 100.0 32 ............................. TTCTGACAAGAACAGTCAAGCCGTGGGCAAAA 3553 29 100.0 32 ............................. GGGAAGAGGTTGCATGTCGCCGTCTGGGAACA 3614 29 100.0 32 ............................. CTGTCATTCTCACAGACAACCTCCGCAAAGAT 3675 29 96.6 32 ............................A ATTTAACACCATGCCCAGCACACGCCGCCGCA 3736 29 100.0 32 ............................. TCCTCTTTTACACGACGCAACCACGTCCTATC 3797 29 96.6 32 ............................T TACAAGGATCTCCCCGGCGTCCGGATTGGCGT 3858 29 100.0 32 ............................. GTAGCAGCAAGCTTTGCGCCTTGTAACGTCTT 3919 29 100.0 32 ............................. GTTGCTATGGCTAACCTGGTCACTGTCACGAC 3980 29 100.0 32 ............................. CCCGCCGCGTATGCGGCTGACACGGCCTGCTT 4041 29 96.6 32 ............................T GGTCAGCAGTTTGTTGTCGACCGCAGGCAGTT 4102 29 100.0 32 ............................. CTCCCTGCCACTGGTAATCGGGACATTGGGAA 4163 29 100.0 32 ............................. CGGGGCCACCGCCAAAGGGCAACCCCGCTTTG 4224 29 100.0 32 ............................. CACGCGCAACCAGTCACGGCCTGCGGGAGTGG 4285 29 100.0 32 ............................. GCCTCACAGCCCCCGGGCAGGAGATGCTGCAA 4346 29 100.0 32 ............................. ATTTTGATCCTGAGGTCACAGACGCGCTTTTC 4407 29 100.0 32 ............................. CCTCAACCTCCGCAATCACTCGGCCCGATTCA 4468 29 100.0 32 ............................. GGTTCTGGTTTTCCGATGCCTTGATACCCTCC 4529 29 100.0 32 ............................. AGCGCATGTTTGATATTGCGGGCTTCTTCCTT 4590 29 96.6 32 ............................C CTACTTTGTCCATGTGCCTGCCGAAAACGTGC 4651 29 100.0 32 ............................. CCTCTGATGCTCGTCTCCAGCGTCCTGAATAT 4712 29 100.0 32 ............................. AACCTTGTCCCCGGCATCTATATCCTTACCGA 4773 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 69 29 99.4 32 GTATTCCCCACACGCGTGGGGATGAACCG # Left flank : AGCCAGAGATGGCCAACGTTGCCATGATCATGCGTCAGACGGACGTTGGGAAAGGATAAGCATACTTTCAGCAATCCGGGTAACGGGAGAGACTTGCAGTGTTGTTTTTGATGGGGCACTGGATGGAAAAATGTACAATGCTTATATTGAAAAATTTCTTCTTCCAACGCTTAAAGCTAACGATGTTGTTATAATGGATAATTTGAATGTCCATAAATCAAAAACAGCCCAAAACTTGATAAGGGAAAAAGGCTGCAAGTATATTTTCCTTCCAGAATACAGCCCGGATTTAAATCCCATTGAAAAGATGTGGAGCAAAGTGAAACAATTACTTCGGGGTATGAAAGCAAAAACATGTGATGAACTGTACAAGTCCATTGGAAAAGCATTAAGTTGTATCACACAAAAAGACGCTGAAGGATGGTTTAAATCCTGTGGCTATGTAAAAAGTTAAAAGCAAAATGCTCTAGCGCGGGCATCATTAGGCAGCCTGTTTAGCC # Right flank : GGCAGAAGAAGCAAAACCAGTCCAGGGCATTAGAGCAATTTGACTTTTATTTTATTTAAAAATCGTTTAGATTGCAGAGATGAAATTTGCATCTGAAGAAATCCGAACCAAGGCTGTTCATGCGTATCTTGATGGAAAAGCAACAGCCAGGCAATTGGCAGATATTTTAGGTTATACCCCGGCTAGCATCTGCAATTGGGTCAGAGCTTACCGTGAAAACCAACGATTATCAGCCAAACCCAATGGCCATCGCCCAAGTTGTTTCTCATGCGAGGAGATTCGGGAATTGCAAGCCCTTCTTGATAAAAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACACGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 24758-30579 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKEH010000037.1 Desulfovibrio sp. ZJ200 Scaffold36_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 24758 29 100.0 32 ............................. CGCAGATCCGTTTTTTCGTGGATGTCTTTGTA 24819 29 100.0 32 ............................. GTAAATTGCAAAAACTCTTGGAGTATGATGCT 24880 29 100.0 32 ............................. GCGCGAGGGGTAAAAATTATGTCGACGTGGCC 24941 29 100.0 32 ............................. TCACATATCCTGCAACATATTGAATAGTGTGT 25002 29 100.0 32 ............................. ATCACATACGGATACCGGCACGGCGCGCGAAA 25063 29 100.0 32 ............................. ACGATGAGGAACATACCAGCTATGAATTTTAA 25124 29 100.0 32 ............................. GTGCTTCACCGTTTTTTTCGTCTTCGGGTGCG 25185 29 96.6 32 ............................T GCGGACTGTGGCCCGCCGCGTCTCTCTGGGCG 25246 29 100.0 32 ............................. TTTTCTCCTCCTCGCATCCGCGAGGTATTGCA 25307 29 100.0 32 ............................. CCCGGTCTTGGTTATGCTGCTGTTGAAACGTT 25368 29 100.0 32 ............................. CTGAACATTACCGGAAATAGTAGTATTGGCCT 25429 29 100.0 32 ............................. ACGCACTCAGAGACATAGGTGTCCCTGAGAAA 25490 29 96.6 32 ............................T CCACACAGGATGCCATCCGGCGGGCTGAAGAA 25551 29 100.0 32 ............................. TAAACAGGTACAAATAGAGCGTCGTTTTAGAA 25612 29 100.0 32 ............................. ATGGGGATAATCCCGATCGCTCTCAGCCATAC 25673 29 100.0 32 ............................. CGACGAAGACTAGCCAAGGGGAGAGGGAGAGC 25734 29 100.0 32 ............................. CGGGGGCAGCGGCAGCCTGTTGCTGTTCTTCG 25795 29 100.0 32 ............................. AAGGTGGAGATGATGCTTTAAGTGTAGCTAAG 25856 29 100.0 33 ............................. GTGTTGCTGAAAGAGCAGCAATGGCTCAAATAC 25918 29 100.0 32 ............................. GGCTCGATGTTACAGTTCCTGTAAATCAGCAG 25979 29 100.0 32 ............................. TTCCAGGATTTTCTGGAAAACTGCTTGCGCTA 26040 29 100.0 32 ............................. CGTCTCTGTGAGATGGGCATACTTGTAAAGGG 26101 29 100.0 32 ............................. TTGTCTGTGAGAACGACAGCTTCAGCTACAAG 26162 29 100.0 32 ............................. TATCCTCAACCCTAAAATTAACAGGCTGCTGT 26223 29 100.0 32 ............................. CTGCTCCCGCCCGAAAACCTGTTTTTGGATTG 26284 29 100.0 32 ............................. TTGCTCCCGCCCCAAAAGGAATCTCAGGGCAA 26345 29 100.0 32 ............................. TGTTGCCGCTCGGGGTGTTCTGATGGCCGTTA 26406 29 100.0 32 ............................. CTCGCTGCGTGAGCAGTACCGCATTTTGTGCG 26467 29 100.0 32 ............................. GGTTCTTACAGAGCATAACATGCCCTAGGGCG 26528 29 100.0 32 ............................. TCCACTGGGCAGTAAAAGACGGAGGACCGTCA 26589 29 100.0 32 ............................. AACCCTTTCGTTAGGGACCCGACAGGGAAGGT 26650 29 100.0 32 ............................. CAAAGGGCAAGCAGGTACAAATAGAGCGTAGG 26711 29 100.0 32 ............................. GCCTTTTTGAGGCCACGGACGCGCAGTTGTAA 26772 29 100.0 29 ............................. ACGGAACGCGAGCGACGACGACGGCGACC 26830 29 100.0 32 ............................. TTGGCGTCCTTCATCGGATGGCCCCGGCATCC 26891 29 100.0 32 ............................. CCCCTATATACCGCAATACAAGAAACTCGCGA 26952 29 100.0 32 ............................. ACGGAACGCGAGCGACGACGACGGCGACCATA 27013 29 96.6 32 ............................T CTCAGGATGCGTGCCTGCCTCAGCAAACGCAG 27074 29 100.0 32 ............................. ATACTCAACGTAACGAGAACCATACATAGCGC 27135 29 100.0 32 ............................. AGCGGCAAAATTGGGCGGCAGCGGGCGGGGTT 27196 29 100.0 32 ............................. AAAATGAAATGGTTCACAATTTTCATCATCAG 27257 29 96.6 31 ............................A CGGGTCAGCATCCAGGGCTCTACCGCTCTAC 27317 29 96.6 32 ............................T TTCGGCCACGGCTTACGGATGAAATTCATTTT 27378 29 96.6 32 ............................T TTATGGCTACGTTGGACGAATTTGGTCGTGAG 27439 29 100.0 32 ............................. AATGATGTCAATGAATGTTGCTTATTTATTTG 27500 29 96.6 32 ............................T GCGCCCGTGATGTGCGCGGCCTTGTGGGTGAT 27561 29 100.0 32 ............................. TGTCTATATTGGAAGGAAATCTTGATCGTGCT 27622 29 100.0 32 ............................. CCCTTGATATGATTGGCATGGAGATCGTCCAG 27683 29 100.0 32 ............................. ACGGTGGCACTCAGAGGAGTCAGCTAAACTTG 27744 29 100.0 32 ............................. AGCCGAACATTTCCAGCGACAACCCGGCTGAA 27805 29 96.6 32 ............................T TTTTTGACGGTATAAAAAACCCCGGGGGTCAT 27866 29 96.6 32 ............................T GGCGGAACTGGAGGCCGAGTGCCGCACGGGCC 27927 29 100.0 32 ............................. GCATATTTATTTTTCCCGCACATCCGACCACG 27988 29 100.0 32 ............................. ATTTTGCGGCATGGCCGGGCGCAAAATGGCGG 28049 29 100.0 32 ............................. GCACAGCAGAAATAAAATCAGCGTTTAACACA 28110 29 100.0 32 ............................. GGCTTTTGACGATGTACAGCGCAAAAATAAAA 28171 29 100.0 32 ............................. GAAAGGGAATACCATTAACAGCACGATCTAAA 28232 29 100.0 32 ............................. ATGGTGGTACTCAGAGGAGTCAGCTGAACTTG 28293 29 100.0 32 ............................. CCTCGGATGCTCGTCTCCAACGTCCTGAATAT 28354 29 100.0 32 ............................. GGGTTATCATGGCTACCACCAATCGCACCACC 28415 29 100.0 32 ............................. CCGCCCAACGTTTAGGCGGCTCGCGGCGATTC 28476 29 100.0 32 ............................. CCGTGTTTGACGCGCTATACATAAACGGTAGC 28537 29 100.0 32 ............................. AACCTCTTTGAACGCTTTTGTACCGAACCTCC 28598 29 100.0 32 ............................. CCCGCGCCCAAGGCCAATCGCAAGCCCGCCGA 28659 29 100.0 32 ............................. ATTTCATCGTCCGTGGCATCGCACTGGATGCC 28720 29 100.0 32 ............................. ATTTGCTGCGGGCCATAACAGAAAGAAATCTG 28781 29 100.0 32 ............................. AAGCGGAAAAAGAGGAAGTGAGATGTGTATCC 28842 29 100.0 32 ............................. GAGATCAAGGAAAACCGGGCCGAAAGCATGGC 28903 29 100.0 32 ............................. GAGATTCACATGGAACTGTCGGAACGGATTGA 28964 29 100.0 32 ............................. CTGAGACGGGTATGACTGAAGCAGCGAGGGGA 29025 29 100.0 32 ............................. ACCTTTTGGCTTTCGTCGCGCTCCACAATTTT 29086 29 96.6 32 ............................T TACCTGGTTGAGCCGTTTTTTCTCCATAACGC 29147 29 96.6 32 ............................A AGCTCCGGGAATGGGGCACCACGAAGGAAGAT 29208 29 96.6 32 ............................T TTGTCAATCTGGCTTCCGGCACGGTGTATGTC 29269 29 96.6 33 ............................T TCCAGGCTGGCCAGTTCGCTGAACAGTTTGCAC 29331 29 100.0 32 ............................. TTTCCTGATTCGGTTGGGAGTCATGGAGTACA 29392 29 100.0 32 ............................. AATCCACGGCCCCGGTTACGTTCGCGCGTGAC 29453 29 100.0 32 ............................. AATACCCGATGCCGTCCAGCGTCCCGAGGAAT 29514 29 100.0 32 ............................. GGTCAGGGCTTTGCGGGTCTCAGGGCCGAGGA 29575 29 100.0 32 ............................. GATCATGTCCGGCGTATCGTATCCACCCACAA 29636 29 100.0 32 ............................. GATGTCTATATCGCTAATACATTCTCCTGCTT 29697 29 100.0 32 ............................. CGTCGGATCAATCGCGTCACTGGTGCAGGCCG 29758 29 100.0 32 ............................. AACAGGATCGGGGCGGCGGCAATGGTGGAGGT 29819 29 100.0 32 ............................. GGATAAACCGTGAGCCGACACGCCACCAGGGC 29880 29 96.6 32 ............................T TTGCCATTGAGCACGAAAGCGCAGAGCGGCAG 29941 29 100.0 32 ............................. CGTACCCTTGACCGAATGAGCGGCGTAGGCAA 30002 29 100.0 32 ............................. ATGCTGTGGGGATTACCGGGCCAAGTGGCTGC 30063 29 100.0 32 ............................. CCGTATGTTGGCGATATTCCTCTAGCCATGAT 30124 29 100.0 32 ............................. CCAACAGCACGCGCATAGTGGAAACGCTCTAT 30185 29 100.0 32 ............................. AGCGCACAGGGCAGCTTGTCGCGTGGGGTGTA 30246 29 100.0 32 ............................. CCGCCGCGCCGTTGCCGATTTATGACATGGCT 30307 29 100.0 32 ............................. CATGGATCAGGATAAAATACTCGCAAAGCTCG 30368 29 100.0 32 ............................. TTTCTCGCGTACCACAGACTGCCTGACTCGTC 30429 29 100.0 32 ............................. CAAAAAATATGGCAACAGTAAAAAAATTTTTT 30490 29 100.0 32 ............................. ATTACAGAGATGGAGCAGACCGCCGCCGAGCT 30551 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================= ================== 96 29 99.5 32 GTATTCCCCACACGCGTGGGGATGAACCG # Left flank : GCAACCATCTGAAATTAAAAACGAATTTTTTAGAAAATCATCTCAAAGGTGAATCCCTCCGCGGGCGGAATATATGACTTTTAGAGCGACAAACGATACAAAAGTGTTATCCTTGCATGGCAAGAAGGCAATATGGAGCTTTCTATGCGTATGACTGATAAAATTATTGGCGTGAGCATTCAAACAATACTGCGATGGGTTAGAGTGTTTTGCTAATGAAATTAGTTACACTCTTTGGCGACAGCGTTAGCTGGCACCCGCGCCGAATGAGCGTCCAGACCGCGTTCTGGACGCGAAATGATGGCAGCGAAGTGATTGAAAATGGATATTTTCAATCAAAAAATGCTCTAAACTGAGAATAAACAGCATTGCGCAAGCCGGCTTGCGCTTGTCCGCAGTCCATGATACGCGAGCTGCGGATAGCGCGCAGTCGCGCCTTTACGGCCGGTAGTTTTTGAACTGATGAAAAAGTTTAATTATTCTTTCTAAGTACAGAAAGA # Right flank : AGAGCAATTTGACTTTTATTTTATTTAAAAATCGTTTAGATTGCAGAGATGAAATTTGCATCTGAAGAAATCCGAACCAAGGCTGTTCATGCGTATCTTGATGGAAAAGCAACAGCCAGGCAATTGGCAGATATTTTAGGTTATACCCCGGCTAGCATCTGCAATTGGGTCAGAGCTTACCGTGAAAACCAACGATTATCAGCCAAACCCAATGGCCATCGCCCAAGTTGTTTCTCATGCGAGGAGATTCGGGAATTGCAAGCCCTTCTTGATAAAAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACACGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //