Array 1 2343723-2342887 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011382.1 Calothrix sp. 336/3 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 2343722 37 100.0 36 ..................................... ACTTAGGATTACATCTCTACATGATTGCGGACAATG 2343649 37 100.0 34 ..................................... AAACCATTATCAGTGTCCCCATCATACGGGGCAG 2343578 37 100.0 34 ..................................... CCCCATTGCGGCAGATTCTATCATCACGGGTTAT 2343507 37 100.0 35 ..................................... CAATTTATCTGTCTATAGGTTAGATGACTATAAAA 2343435 37 100.0 34 ..................................... TCAGCTAAAAAATCCGTCGCAACTGCGGATAATA 2343364 37 100.0 38 ..................................... AATTCACGTCCGACATAGGTTTTATCGTAGGCGATACG 2343289 37 100.0 34 ..................................... GTTCAGCTGGGTCAAGTAACAGACCAGATGTTGC 2343218 37 100.0 40 ..................................... TATTTCCCATCTCTTCCCACCCAAGGCTTAATTCTTCTAA 2343141 37 100.0 34 ..................................... ATTCTGTTGATGCCCATTCTTGCCAGTTCACCGA 2343070 37 100.0 38 ..................................... ATCTTCTACAGACCACAAGATAACACCATGGAGCCTGG 2342995 37 100.0 35 ..................................... GCCCATGGATTTTGCTGAATAATATTATTGTCCAG 2342923 37 94.6 0 .....A...T........................... | ========== ====== ====== ====== ===================================== ======================================== ================== 12 37 99.5 36 CTTTCTAATAAATGAAACCCGTTCGCGGGATTGAAAC # Left flank : GAATATTGTCCACGTCGCTTTTTTCTGGAATACGAATTAGGGGAAAATGCTGACAACGAACATATTATTATTGGTCGTCATTTACACCGCAATATCGATGACGAAGGTAAATACATCGAAGGAGAAAAAACCATTTACCGCCATCAGTAGATTCGGTGCGTATTTATGTCTTGGATGCAGGTTCGGTGCGAAAGACGATTACCTACGGCTCGGAAAAACCCCGGCAGGAAGATACAATTATTTTATGATGGTTTAATCTTTCGCTGGTTTCGCTGTAGCTGTGGTGGTGTTATTATCAAGTCAGCAGTTTTTCTGCCATGGGAAAGCACGGTCAAAAACCCCAGCCCCCCGGCAAAAGCCCAGAACCTTGATAATTGAATAGTTTTAGCGTTTTCTGTTTTGAGCGATCGCTCTTTGTCAATAGCTGAAATGGAGTTTTGATTCTCCCCCGGCATTTTTGCTGCTGTGAGTCTTTCTGTGACAACCTTCTGGCTGTTGGA # Right flank : TACATTGTTCCGTTGATATCTTCGCTTATTCCTGCTTTCTAATAAATGAAACCCGTTATTTCTTCTGTTAGCTGCTCGATTGAACGCATAACTTTCTGGCAGAATATTAAACTCTAGGGGTATTGTAACAAAAACCTGAATTTCTCAAGAACAGCGATCGCTACTGTTAATGTATAAGCCGTTTAGAGCTACAGTTGCTGTTCATCTAATTGCGGAATGCACAAGATTTTAGAAAATTTTAACCCTATGATAAGCTTCCCCACTTAGCCAGAGAGGATATCAAACTGATTTCGCATCCTGTTCGAGTAACATAAGTAGCTTACGCAGCATTGGGATGGATAGTTGCACTTCATCAGCTGTGAATTGAGATAACATCTGTTTCTCTTTCTCAAACAAAATAGGCATCACAGTATCCGCAAGCTGTATTCCTTTGGGGGTCAGTTGCACCATGACACTGCGCCGATCCTCTGCATCACGGACACGCATGACTATGCCATCTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCTAATAAATGAAACCCGTTCGCGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.20,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 2 6173597-6174436 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011382.1 Calothrix sp. 336/3 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 6173597 37 100.0 38 ..................................... AGGACACCTACAACAACAGCAAAGAACTATTCAACAAA 6173672 37 100.0 37 ..................................... GAAATCAAGTAAAAATGCAAGAAAAAAGCAGACCGAG 6173746 37 100.0 36 ..................................... TCCCTAATTACCGCACGCCCCACTAAAGGGACAGAA 6173819 37 100.0 31 ..................................... ATTCCTGGCTATTTTCCTTACGGGTTCCCAG 6173887 37 100.0 39 ..................................... ATTGCCTCAAAGGGGAAATGCATAATAGCGGCTATATAA 6173963 37 100.0 36 ..................................... CATTAGGAACAATCAATACATTATTAGCTTCAGAAA 6174036 37 100.0 36 ..................................... AAAACACTTAATTAAGAGCCATAACCCTCTCTCATC 6174109 37 100.0 37 ..................................... CCATTATGTTCTCAGCACTAGGCATCGCTTTCCCTGA 6174183 37 100.0 34 ..................................... AGGTTTATTCAGTTTCTATCTACGGAAATGTATC 6174254 37 100.0 35 ..................................... CAGTCCTTTGGATTTATTTGTTAGGTGAAAATATC 6174326 37 100.0 37 ..................................... GGGTTTGCTCTTAAATCGCCTTCAAAACTATTACGAA 6174400 37 97.3 0 ....................................A | ========== ====== ====== ====== ===================================== ======================================= ================== 12 37 99.8 36 CTTGAAACTAACTGATTCCCGTTCGCGGGATTGAAAC # Left flank : GTTGTTTAACCACTTCTGTATAAACCCTAGAGACAACTTCAAAGGCAACTTGCTGCTTGTCAGGCAAGACGGTAAAAACGTTCACAAATGTAATCATAGCTTTTCAGCTTGTCTACACCACTGAATAATCACAACTTTACAGCATATTTGCAATCTAACTATTATCGAAAATGCAAGATTCGCTTTCACCTACAGCCCAGACAAGCATGAATTAATGCACCTGCAATCATATTACAAATTATTGCTATACTCTCGACATCAGGTAAACAATTATTCTATTGTTATGCCATTAAATTAGTGTTTGCCAGGGCAAAGTACAGGCGAAAACCTGGGAGTCCCGGCAGAATCAACAGAACCTTGACAACATAATAATTACAGCGTTTTGTTATTCCTGACTATTGATTATTAATATCAATAAGTGTGGCTGAAAGGAGGTCATTTTTTCGACCTGGCAAAACTGCTTGTAGAACTATTGTTCTGTAAGGGTTTCAGGTGCTGGA # Right flank : ATTTATTTTTCTCTAAAGAAATAAGTACAACTGCTCAAAACTACCGATTTAGTTGACGGGATTAAGTTTGATTACAGACAGCGATCGCTATCCTCAAATTATCTTCGACGAAACACAAACAGATTGCCCGTTTTCCCCCTACCAATTCTCATCTCCCCATCTAAATAAGAAGTTATCCACACAGCTTGATTCCGCAGAAATTCCAACACCGGGATTTTCAAACGAGGTAAAGTCAAAGGTTTAGTTGCTTGCAACGAAAATGCACAAAAACTAACTAGGGCGGTTTTTTCATCCTCCCGTTGCCAAACTCCCTCAGCCTGAACTTGCCATTCTCCCAAAACAGGCAATTCCATCAGGGCACAATTGGAAGTAGCAATTTTTCCAGCCTCATCTACAGTCAAATTTTGCCACACCTGGTTAATTTTTACACTCATCCAATCAGGTGTTGTTGCCAGCTTGCGAGTCACCACAGTTCCCCTGGAAGCGTATATCAACTGCCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGAAACTAACTGATTCCCGTTCGCGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 3 6241159-6240746 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011382.1 Calothrix sp. 336/3 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 6241158 37 100.0 38 ..................................... CGGAAGGAATACGAGAGTTTTCAATCTGACTGGTTTGC 6241083 37 100.0 42 ..................................... ACGAACAACCACAACTCAAGGGAGCGGGGAACGATCATCGCG 6241004 37 100.0 37 ..................................... GAAATTGAATGCTACTCTTATTGGGTGGGAGGCGATC 6240930 37 97.3 39 ....................................A AAATGTATTTGGACCATTTGCTGTGCATTTTTTCGCCCG 6240854 37 100.0 35 ..................................... TCAAGTATGAATATTACTACAGCAGAATAAGCATA 6240782 37 94.6 0 .................................GT.. | ========== ====== ====== ====== ===================================== ========================================== ================== 6 37 98.6 38 GTTTTAGACCCCCATAACCCCGCAAGGGGACGGAAAC # Left flank : GATGGGTGATAGAGCTACGCTCCGCTAAAGCGATGCTCCCAAGGGGAGCCGCGCAAAGCGCGATCGCTAAACTATGCCGATTTTGGGACTCAAAGTCAGCGAAGACGGAAGGTGCGGGTATACGGAAGCGATAAACCCTAGGAATCACCCAATTATTTATTTTTGTAACAAGTCGTATTGGCAATTCTTCCTGGATGTGGGGGCTAAAAGTGCTTTCACATCTGCTTTTTGGCGATTGTAAATGATTGTAAACTTTCCTGCCAAAATGTCGCGCAGAGCTAGGAAGATAAGGAAAGAGCAAAGTTGCGCTAGTTAAAGAAAAGTAATATTTTTTCGGTTGACTCGTGACTGTTTTGCGATAATATTATCTGTAGAAGCATTTTTTGCCGCTATATGGTTTTGGAAATGTGTACTGTATTTCTAAATTACGTCACTACCTCCGTACATCGGCGCAACTGTACCTTGAAAACTAAATATATCAACGGTTTCCAATGGGTAGG # Right flank : GGCTATCAATCGCTTACAAGAGTGAGTATCTTAGAAATAGTCCTGGTTAATGTCTAAACCAGTACCTGTCCGAAGCGGTATTATATGAAAATCCATCAACGTCATGACTGGGATTTGAGTTTGGAGGATGCTAAAACCATCCAAAAGCAGCTGCAAGCAGAGGTGATTACAACTGATCAATTCACCGAACCTGTAAAATATGTGGCTGGGGTAGATATGGGTTTTGAGGCTGATGGTACAATTAGTCGGGCTGCGGTGGCTGTTTTAAGTTTTCCTGATTTAGAGGTAGTGGAAACTCAGATTGCCTATCGTCCTACTTCTTTCCCCTATATTCCAGGTTTTCTATCTTTTCGAGAAATTCCGGCGGTATTAGATGCATTAGAAAAGATACAAACTATACCAGATATTATCCTGTGTGATGGTCAAGGGATTGCCCACCCTCGGAGATTTGGCATTGCTTGCCATTTGGGTGTGATTTTGAATTTACCGACGATTGGTGT # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGACCCCCATAACCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 4 6276594-6277573 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011382.1 Calothrix sp. 336/3 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 6276594 36 100.0 30 .................................... ACGGAAAGAGCGATTAAAAGCACTGTGGAA 6276660 36 100.0 41 .................................... GATTTGACGGCAACCTTTGTTTTCCCATTTATGCACCTCAT 6276737 36 100.0 37 .................................... CAGAGAAATAGCAAATTCCACAATCCCTCCACCACAG 6276810 36 100.0 37 .................................... TGTAGTTCTTGCTCCTCTTCCGTCGAGAGAGAAGAGG 6276883 36 100.0 41 .................................... TTCAATGAGAGCCTCAACGACAGATGCTGCCGCCGCTACGA 6276960 36 100.0 35 .................................... TAACTGTTGTCCAGCGGCCGTCATCCGAGATGGTG 6277031 36 100.0 38 .................................... GGGTCGCTGCTGGTGAGCAGCGTGCCACCCGCCCCGGT 6277105 36 100.0 34 .................................... GTTTTGAGAATTTCCTTTGCCTAGTTGGGCAATT 6277175 36 100.0 36 .................................... TGGCTGGCAGAGAATTTTTTGAAGTATTCAACAACA 6277247 36 100.0 37 .................................... CAAAGACAAAGCAGAACTAACAGAAACAAAAAGAACA 6277320 36 100.0 37 .................................... CTTGAAAACAAACGATAGAGGTTTCCTCGTTTGGTTC 6277393 36 100.0 34 .................................... TCCCAGGTGCAGTGGGTTGCTCTCAATCTTTCGA 6277463 36 100.0 39 .................................... CCATAGGTGCCATTCGGACGCTGGGGATTGGTGAATTGC 6277538 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 14 36 100.0 37 CTTTACAAACTATTCCCCTTCACCGGGGACGGAAAC # Left flank : AGTAAGGAGGAATGAGGAATGAGTAATGAGGAATGAGTAAGGAGTAATGATACTAAGTTCCTATTGGAGGTAGTCGTCTCTGTACTGTCATTGCGATCGCGGGGAACTAATCCCATTATCCTGAACCTACCACAACAGCACCCAACTTGGTATTAATGGCGATAGAGCTACGCTCCACCGAAGCGGCGATAGGCTATCATTTACCTTTCCTCACAAATCATCCCCCGACTTTCGGCAATTTTGTTAAGAAATATATGGGCTATATTGCTTGTGGGGTAAGGATTTGGTAGCTTTATACATGGAAATTGTATCGAGAAATCGACACCACTCCCCCGAACCTTGAAAACCGCATAACTTCGTTGACTGGTGTCGATGCCTTACGCATCAAGGTTTCCAGGCTGCAAAATCGACTATTTTTTGAGAAATTTTTACAGATTTTTCGAGTGGTGTCGATTGGGGTATCTCAAACCCTCTCACAGCAAGGCTTCCAAAAGTGAACT # Right flank : CGCTAGGTAACCCAAATTGAAGATGTCACTTTACCCAGGTAATGGCACTAAAGTGGAAGCACTTTATGGCACTAAAAAAGCTTGAAAAGCTGATGATTACGTTGCGCGAAAGAGGCGATTCTGAGAATAATGGAAGCAGTAGATGGCACAAAGTATAAAAATAGGACGACTAAAATGGCACAAAGTATGTAAAAGACAGACAAACAGATGAAACCTTTGTATAGAGATGGTTTCAGGGCGAATAGTCATAGGATATTTAGACAATTAGATTTGATTGCATTCTCAAAAACGACGTAAAAATGACATAAAAGCTAGTACATAGGAACTTTTGAACTACTATTTGATAGTACGAAATCGTGAGAAAATGTAAAATTTAATAGACAATATAGTATAAAATAACACTGTATTTAAAAACGCTGAATAATAGTCCAGACAATAGCTTGAGCAATTATAAGCCGGATTTTGTGGAAGCACTTCGTGGCACTAAGTAGAAAAAAATT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACAAACTATTCCCCTTCACCGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.50,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA //