Array 1 160689-164736 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADWMP020000006.1 Shewanella sp. DW31 NODE_6_length_218903_cov_121.215057, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 160689 28 100.0 32 ............................ ATGCTATCGACCACCTCACGGGTTTCAGCATT 160749 28 100.0 32 ............................ CAATATTAAGTCAGATGATGACGGGGATAAAT 160809 28 100.0 32 ............................ ACTTAGCAGCCCACATAAACAGTGCTTTAACT 160869 28 100.0 32 ............................ TAGTGATGATCAAGGGTGAACCCTATCAAATA 160929 28 100.0 32 ............................ CAGCCCTTTAATCAATTTAGCGGTATCGAGCA 160989 28 100.0 32 ............................ ATCACCACCAATGACCGCTTTGGCCTAGTGAT 161049 28 100.0 32 ............................ ATTTACGGGGTGAGGCATCGTGGCACTATTTT 161109 28 100.0 32 ............................ ATTATGGTGTTTTTCATTTTCATCGTCGGCTT 161169 28 100.0 32 ............................ CACAGAGACATCAGGAACCTCTTCACCAGTGA 161229 28 100.0 32 ............................ TTAACTATGTCGAAACTAAACACTCAATGTTT 161289 28 100.0 32 ............................ AGCATGAGCAACTGGCTAGCGGTTTTGTTAGG 161349 28 100.0 32 ............................ AAGATGTAATCTGGTTTTTCCGATGCGCCAAA 161409 28 100.0 32 ............................ TATATGGCAAGCCGGGAACTGTCAAAATGACA 161469 28 100.0 32 ............................ ATATGGTTCACAATTCTGCCAGCTTTAGAAGC 161529 28 100.0 32 ............................ GATTGTCGACATCCTCAACAAGATTAAAGGCA 161589 28 100.0 32 ............................ TTGGCCGCGCCGGAGTGCACTCGCTATGAGCC 161649 28 100.0 32 ............................ ATACAGGCTCGTAAACGAGGCAGATTCTAACC 161709 28 100.0 32 ............................ TTATTGGTCACAAAAACACGCAATTGCGTTTT 161769 28 100.0 32 ............................ ATCTTAGTGGATGATATAACTTTTAACAACGA 161829 28 100.0 32 ............................ TACCCCACTTAAATCAACTGGCTTGCTCGTTT 161889 28 100.0 32 ............................ GCTTGAGTAAGCCGCTCCACATCACCGATATG 161949 28 100.0 32 ............................ CCTTTTCGTGGTCGAATGATTCTTACAAAGAA 162009 28 100.0 32 ............................ TTTAACTGGCATTAAACCCCCAAAATATAATC 162069 28 100.0 32 ............................ TGAAACAGTTGGTCAATTCACTGGATTGCTAG 162129 28 100.0 32 ............................ AGTTTCAAGCGGGAGATTCAACAGGTTTTGGT 162189 28 100.0 32 ............................ ATAGCCTTGCCTAACTTTGATTCGCTTTTATT 162249 28 100.0 32 ............................ GTATAGAATGGTTAAAGTCGGCGCAGGCTGTG 162309 28 100.0 32 ............................ AACGAGAAACATCAAAATAGTAATACACAAAG 162369 28 100.0 32 ............................ TGAGCAGATGATATCCATTGATGTAGATGATA 162429 28 100.0 32 ............................ CAGCACTTTGGCGAAAATATCTAACACAAAAT 162489 28 100.0 32 ............................ TTGAAAACATGCTTAGCGTTCAGCGCGAGGCA 162549 28 100.0 32 ............................ ATTGCGGCCTTCGATGTACGTATCAGTGATTT 162609 28 100.0 32 ............................ TAGGTGCTGCTGGTTTTAATATTGACCTAACC 162669 28 100.0 32 ............................ AGCATAAGGGGATCGACAATGGCTCGTTACAA 162729 28 100.0 32 ............................ ATTCGGATATGTGATCCCATCCGCCTTGTTTT 162789 28 100.0 32 ............................ AGTCAGACTTCCTCTATTCATCACCAAGTGAT 162849 28 100.0 32 ............................ AACTGAATCAGGTAGCAGCCTCACGACTGCCC 162909 28 100.0 32 ............................ ACTCCTGAGGATTACACTAAATACGATTGGAA 162969 28 100.0 32 ............................ GGTAGAAAATCCACCATGACCTGTGCCGAAAA 163029 28 100.0 32 ............................ ACGGAAGCATATACAGCGGCTTATGCTGGCGT 163089 28 100.0 32 ............................ GTTAGTGAATGAGCTATCAGACTGCGTTAAGT 163149 28 100.0 32 ............................ ACTACGCAAATTAACTACATCACGCAGCTAAC 163209 28 100.0 32 ............................ GTTATTTGAACGGGCGTTCTTCTTAGAAGCGT 163269 28 96.4 32 ............G............... TGCTTCATTAATTGCTACGCACTGAGACATTT 163329 28 96.4 32 ............G............... TGCTTCATTAATTGCTACGCACTGAGACATTT 163389 28 100.0 32 ............................ GCCACCCGTAGAGCCGCCAGAAGTCTGTAAAG 163449 28 100.0 32 ............................ AAGCATTGGGATCGGCTCTGCGAATGCGCTAA 163509 28 100.0 32 ............................ TCCAAGCACGATATCAAATGCTGCAGCAGCAT 163569 28 100.0 32 ............................ GCCACGAAAACACCGTAAAAAAGATCCGCAGA 163629 28 100.0 32 ............................ TGTTTTAAGATGCGCTCAGATAGATAAAGCAT 163689 28 100.0 32 ............................ GCTAGAGACAATGGCAAAGGTGGAGTTTGGAA 163749 28 100.0 32 ............................ GTCGCTAGGCGTTGAATCAGTTTCAACATCAG 163809 28 100.0 32 ............................ AATAGATGAGTATTCACCTATTTTCGTCCAAT 163869 28 100.0 32 ............................ TTGTACAGCTTTCTCGCCTGCAATGCGCTTGG 163929 28 100.0 32 ............................ TGTATTACTATCAGTTTCACCTTCAACCCATT 163989 28 100.0 32 ............................ CACGAGTTACAATAGTCTAACATCATTGTCTC 164049 28 100.0 32 ............................ GTACTGGAACGCGACTGAGGCGATCACTGTTT 164109 28 100.0 32 ............................ TTACGCGCAGATTGACGCCCTTGCTGCAATAT 164169 28 100.0 32 ............................ TTGCTTGTCTGTTCGGCGTGGTAGCCGAGCAC 164229 28 100.0 32 ............................ AGTACGACCCCAGAATCTTGCCTGACTTTGGA 164289 28 100.0 32 ............................ ATATTAAAACAAGCATTCATCAATGGCGGATT 164349 28 100.0 32 ............................ ATGTACACACTGGAGAACGGATATGGCACTTT 164409 28 96.4 32 ..................C......... AGTTTGCAGCAGTTACTCATGCAAAGCGCAGA 164469 28 100.0 32 ............................ TTATGGAAATGTAAGGCAGAATATTTAATATT 164529 28 100.0 32 ............................ CACTGGATTTATGAGCAGCAGTCTTAATGCCG 164589 28 96.4 32 C........................... GGTATTGCTAGCTTTAATTATGAGTTCAGCAA 164649 28 96.4 32 .......................G.... ATAATCAGTTTATTACCTGCAACTACGTTAAG 164709 28 82.1 0 ......C.T.TC......G......... | ========== ====== ====== ====== ============================ ================================ ================== 68 28 99.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CGATGTAACTTACGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCTGAACGTATAGAGCGGGATATGCAGCAAAAAGCCGCACTATGGGCAGAAAAATCCGGTAAACCGCTGGTGGAATGCTTAGCGGATTTACAACAAAGCAAGCCGACAGCATTGTGCTCTTTGCCCTTTATTTACTTGCATAGCCAGCAAACGAAGCAACGATCCCCAGATAAAAGCAGCAAGTTCCCGCTGTTTATTCAGATGCAGCAACAAAGTACATCACAAAATGGGAGCTTCGATTGTTATGGTTTGAGTGCCAAAGTGAATGGACAGTCAGTATTGGGTACCGTACCGCACTTTTAAATTGAACGAAAAAGGGTAAGTTTTACCCTTTATTTTTGCTCTTTAAAAATATGGTTTAAATACAATTAGTTGCAATAGGTGGTTTTAAATAAGGTTAAAAGTGATTTTTATCCTAACTGCCTGTTGTAACTTATTTTTATTGATTTATTCTATT # Right flank : AGCTAGCCAAGTTTGGCTGCAGTTAAAAGCACAAGTTTGATTTGTTGTTCGTTGAAGCGACCCAATAACATTAAGCCTCTTGATTGAGGCTTTTTTATGCGTTTTTCAGGATAGGGTTCTTTTAACTCTTTAAGATTGCCAGTACTGAGGTGCTAAAGTTACCGCCTAATTAGTTAGGTGGCATAAGGGGTTAGCACCTCCTGTATCATATTAAGGCTAACTCAGTAGGTAACTGTCCAACTCCCATTATTGGTTACTACGTCAACTTGCGTTAGATCACACGAGCCTCCATAAGAGACAGAAGTAGATTGACCAAATTTAAGCTGTTTGGGAAAACCTTTTTTCTCGAAAAGGCTTTCACAGTTGCCTCTGTTTACAATGATGTCGTTTATGATGACATCATCTTCAATAGCCTTGACCTTCACTTCGATTGATTTCATATACAAGCCCGCCCTGTCGTAAACTTCAATTTCAACATTCGGTTTAGAATCACTGCAAGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //