Array 1 66853-68030 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP014944.1 Staphylococcus schleiferi strain TSCC54 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 66853 36 100.0 36 .................................... ACTTCTCTCGCCATTTCTGCTAATTGTTCTACTTTG 66925 36 100.0 34 .................................... ACTAGATACCCAGAACAAAATAGGTCTAACGAAA 66995 36 100.0 36 .................................... TCTATAAGTTCATTAATTCCGATACCTAGATTATCT 67067 36 100.0 34 .................................... TTTTTTCCACCCTTTCAGATCATCTATGATCTTG 67137 36 100.0 34 .................................... AATTTTCTAATTCTATAAGTTCATTAATTCCGAT 67207 36 100.0 36 .................................... TATACTATTTACATAATTTTTTATGTGTCTGTCTAC 67279 36 100.0 37 .................................... TAATAGTGTTGTTCTCTATTAAAAGATACAATCCTGT 67352 36 100.0 38 .................................... TCTGTAATGTATTCATTTAATGTAATCATAATTTTTTC 67426 36 100.0 37 .................................... TAGACCATTTACCTCATTATATTTATAGTCTTTATTA 67499 36 100.0 35 .................................... TTTTCTTTAACTGTTTTTACTGCCCATTTAATAGT 67570 36 100.0 35 .................................... ATAAACCCGTTCAATTCGTTATCTTTAAATTCTTG 67641 36 100.0 36 .................................... ACAACTTCGTCATCTTTCATCATTTCTCTTACATCA 67713 36 100.0 36 .................................... ATATTTCTTCCATGAATAACACCCTCCTTTTTTCTA 67785 36 100.0 35 .................................... AAGTTAACGGCATTACCTAATAAAAATATTTTAGG 67856 36 97.2 33 ...................................C TCATCTTTCATGTCACTGATTAATTCATTTGTA 67925 36 97.2 35 ...................................C GGTAATAGTTGCTCAATAGGTAATAAAACGTCGGT 67996 35 91.7 0 ............T.................-...G. | ========== ====== ====== ====== ==================================== ====================================== ================== 17 36 99.2 36 GATCGATAACTACCCCGAATAACAGGGGACGAGAAT # Left flank : TCCCTTGAGTAATCGATTTAATAATTCTACCGCCACATTTTTCTGTTTCAATCCTTCTACATCTTTTAAAAAGTCATCAGATAGGATTGATAAATCGGGTTGTTCAAGACCTAAAGTTTAATAAATGTCAAGTCAATGAAATCTTCAGTTAATAGTGTATATTTGATTATTATTAGTTTAAATATATTAAAATTAAATACTTATTATATATGGTTCTTTACTATTTTAGAAGTATATTTTTTATTTTCCTGAACAGTAGTTATTAAATTTATCTCTTATTTTAAATTAGAAAGGAAGAAAAAGTTAAATTTATATTAAGTTTTATATATGATTAATTATTAACGTATTAAATGTAGTATACTCTTAATATATAGAAAATTATCATAATATTTGTCAAAAAAAGTGACATTTCATATAGTAGCATGGTGTTAGTTGTCACAGTTTTTGACAGCCAAAATAACACTTGAACCTTTGTGGTTATGCTATTTATTAAAGTATCT # Right flank : TGTAAATTTAATTACACTCTAAAATTTGTAAATTTTTAATGGAATACGCATTGATTAATTTTTAGGGGATGAAAAATGAAAGATGTTATTTATGTAGAAAATCATTACTTTGTTACCGTGAAAGAAAATAGTATTAAATTTAGAAATGTAATAGATAAAAGTGAGAAATTTTATTTGTTTGAAGAAATAGAAGCGATTATTTTTGATCATTATAAAAGCTATTTTTCTCATAAATTAGTAATTAAATGTATAGAAAATGATATCGCTATTATTTTTTGTGATAAAAAGCACTCTCCATTAACGCAACTTATTTCTTCTTATGGTATGACTCATCGTCTTCAAAGGATTCAAAGTCAGTTTCAATTATCTGGGAGAACTAGAGATAGAATTTGGAAAAAGATTGTTGTAAATAAAATTATTAATCAATCAAAATGTTTAGAAAACAATTTACATAATGAGAATGTGAAGTTATTAGTAAACTTAGCAAAAGATGTTAGTTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCGATAACTACCCCGAATAACAGGGGACGAGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 76997-76758 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP014944.1 Staphylococcus schleiferi strain TSCC54 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ================================================== ================== 76996 24 100.0 45 ........................ GCATAAAGTTTTGATATACACGATCGAATATGAGTTCTCGTCCCC 76927 24 100.0 50 ........................ AGTGGTCCAGAATTAATACATGGTAAAGGAGTATATCAGTTCTCGTCCCC 76853 24 100.0 47 ........................ GAAGACCAATTAGAATCATATCGCGTCTTAGAAGAGTTCTCGTCCCC G [76845] 76781 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ================================================== ================== 4 24 100.0 48 TCTTCTACGGGGTAGTTATCGAAT # Left flank : CGTAACACTAATGTCTATATCTGGAGCATTGTTAGCTGTTACTTCGCTTTCAGTCGTATACTAATTAATAAAGTATTTACTAATGTGGTTGTATCAAAAATATTTGCTTTTATATCTTGCTTCAGATTTAATTCTTATTGTTTGTTTTCTTCTTTTTATTTTCTTAAGTAGTAACTCTCGAAATTGCACTACACATCCAATTCCTCAATAATATGCATTTCATTCGCTGTTATTTGTATTTAGTATTTCTAATTCCAACTTAATCGCAAAGAAATTATTTATATGAAAGTTATTTTTGTTTCTGTTTATTTAGAAATTGAATGTCGATTAATTTCAATAATAATGAATTACAGTTTAAATCTTGATTTTTTGTTCCTCTTTTTTGCAGAATATTTTATCAAATCAAATATATTTTTAATACTTTTTCTCTATTCTACGAGGATTATCGATTTCTTTTTAACCAAGCCAATTGGGATCATCAAGATGAGATCCTCGTCCCC # Right flank : TTAGATAGCTCTTTAAAGCCTATCAAATCAATAGTTCAAAGGCAAAATTTACTGTCAAAAATAGTGACAAATCACTTGTACTATAAGTGCAGAATGTCACATTTTTTGACAACTAAATTTCAGCTATACTCTAGTTATATTATACTATATTTCCCCATGCCTAAGCTTGTTTTCATACCTGATCCAGAAAATTCGCCAAACTTCAATAAAAAATGAGTTAGTTGTAGAAAAGGTAAGGGTCCTTTAATTTTAAACACTATTTCTCCCGTAAATGAAGGGATTTTAACTTTTTCTAAGTTAAATCGTGTACTTTTCAATTTATAGTCAACAATATTAATATTTTTTTCTAAAAAATCTAATGTTTCTTTATCGTACATTTTATATTCTTCGAAAAAAGCATCAAATTGTATCATAATACTTCTAAAGAAACGTTTAACCTCAGGAAAAATCATGTAATTACTCTGATATTTAAAAGACATAGGTGTCTGTATATTAATTCT # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.09, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCTTCTACGGGGTAGTTATCGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 3 1550062-1549034 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP014944.1 Staphylococcus schleiferi strain TSCC54 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1550061 36 100.0 30 .................................... AAAAAAGAAACCTGAATATAAAGGCGAATT 1549995 36 100.0 30 .................................... GAATTACTGGTAGCTTTAATGAAAAAACAT 1549929 36 100.0 30 .................................... ATATTTCAAATTCACGCAAAGAAGCGATGG 1549863 36 100.0 30 .................................... AACGTAACGAGTCCAAACGGAATTATTTAC 1549797 36 100.0 29 .................................... TGATAGTAGAGTCGACCGCACCCCATACA 1549732 36 100.0 30 .................................... AGCCGTGCTTAACACCTGCAAATCTAACGT 1549666 36 100.0 30 .................................... ATGGTAAATCGGTGTTTTTAGACATCATGG 1549600 36 100.0 30 .................................... AAACTGACTCTGGCTTTGTGGTTATTCCAG 1549534 36 100.0 30 .................................... AACATGAAATAATCATAAACGATTATGTAA 1549468 36 100.0 30 .................................... ACAAGTTGCAGAACGAATTGAATAGAATAT 1549402 36 100.0 30 .................................... TTGATATGCAAGCTAAAAGCGTGGTTGTCA 1549336 36 100.0 30 .................................... AAGAAGCATATGGCGATGGATTGATGACGA 1549270 36 100.0 30 .................................... TAGAGCAAGTGGAGGAATTTACAAGTGAGT 1549204 36 100.0 30 .................................... AATGACTGCAAGAATCGCAAACTATCAATC 1549138 36 100.0 29 .................................... TGTTTATTGCGCTGAAATGGATTCGGAAG 1549073 36 80.6 0 ..............C.......AA.......C.CGG | TC,AG [1549039,1549044] ========== ====== ====== ====== ==================================== ============================== ================== 16 36 98.8 30 GTTTTAGTACTCTGTAATTTTAGGTATAAATGAAAC # Left flank : ATTATATTAGAAATGAAAAGCAATTATTGACAGCAGAGTTTATTGATCACTTGGTGTGGGATGCACCACTTAATTTTGAAAAGCATGAAATTAAACGTAGCTTAGAAAAAATTATTCAATTATATCAAGAGGTCATTGAATTAACTCCGAAGATTTCAAATTATAATTTAGCTGATATCATTGTGTTTGAGCCAATAGATATCTATGTTGTTGTAAGATACCTTAAACATGCAAAACAAGATTTTGAATTGGATATCCATTATGATAATTTACCGATTGCTGTAGCGAAATATATCAAAATGTATGATTTGAAGTTTAATAAATAAATCTAAACGCCTATTAAAGGGAAAGGTTCTAGCGCTTGGTCAATTGACTTGTAAATCAATCGATTAATCAAGCGCTTCTAGATTATTTTAAACAAAATTAAACGAAAATTTAAAAATGTCTAGCATAAACTTGCTTATAATAATCATAAAAATAAGCTATAATTATAGCTAGAG # Right flank : ATTGTTATAAAATCTGTTTATAATAAAGACAAAGATGTTTTCTAAGATACCTCGTGCTTTTTATTGATTGTATAGCACAAAAAAGGCAGAGAAAAATTTGTGAATGTTTTTAACATTTGATATTAAAAAGAGACAAGAATCTTAATTATGATTATAACTATGTAAATGATTATAAAACTTGTATCTTTATATGTAGTAATGTAAGTTTAGTAAACAAATTAGAACAAATTTTAAAATTGTTCAAGACTCATATAATTCAATATATGAAAAATACAATAATACTAAAATCAATTGACAAGTATTCTTGCTACTGGCAAACGTTGTGACATAAACAATACGGTAGCTTTGTCTATAAAAGTATAAGCTCATTGATGTGAATCTGCTATATACATCAATGAGCTTTTATTTTTAAAGTACTTGTAGAATGAATACACTAAAATTCAGAATTTAATTATTATGTTCAATATTGTTAATTACTTGTTCATATGATGCATCTGAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATAAATGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: R [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //