Array 1 364936-366062 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABLSZ010000001.1 Pseudomonas aeruginosa strain S11 NODE_1_length_668578_cov_131.926, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 364936 29 100.0 32 ............................. CCCTGGTCACCGCGTCGCTCCGCTTCGACCCG 364997 29 100.0 32 ............................. CTCTCTAAACGCCTCTCCATTGTTTCTCAGGA 365058 29 100.0 32 ............................. TCGATATCCAGACGTTCGCGCAGTGCTGCTGC 365119 29 100.0 32 ............................. CATCAACAGTTTCTAAAGCGGTCTTAGCCTGA 365180 29 100.0 32 ............................. CCGACCAGGTTGCGTTGCCACAGCGAAACCAG 365241 29 100.0 32 ............................. TCTTCGGACTCCTCGGGCCGCTGCTCGAGCAC 365302 29 100.0 32 ............................. TGAAAAAATGGAAGAACTTCCGGCATCTTAAA 365363 29 100.0 32 ............................. GTCGATGGCTTCGCGCATTGCAGCCTTGTCGC 365424 29 100.0 32 ............................. TGTCTTGGTGACACGAGATTGCAGTGTCGCTA 365485 29 100.0 32 ............................. CCATGGACAACGACAAGCACCCCAACCTCGGC 365546 29 100.0 32 ............................. AGGCGCTGGTGGGCAAGGTCAGCGAGTGGGTA 365607 29 100.0 32 ............................. CTCAAGGAAATCATTTCACTGTCCGACAAGGG 365668 29 100.0 32 ............................. CTACGAGTTCAAGAGCAATGCGCCTGGGATCG 365729 29 100.0 32 ............................. TCAACAACGGTGATGTCGGCTTCGGGCCAGGG 365790 29 100.0 32 ............................. AGGTATTCCTTGCCCTTGGCCAGGAGCACGCC 365851 29 100.0 32 ............................. GTTGTAGTAGTCCAGGGCGGTATCGCCGTAGC 365912 29 100.0 32 ............................. TCATCGATCGTGGCGGCTGCACTGGCTGCCTG 365973 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCG 366034 28 79.3 0 A..........A..C..-.....A....T | C [366038] ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.4 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTCGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACTGGCCGCGTCGAGGCTGAGCAACAGTTTCCCGACCGCTCCTCCGTTGGCCAGGAAGGCCGGTGGATGGTCGAGGGTGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGTTGAGGTGGTGGGTCGTATGGAATATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATCCCGATGCGGGTAGGTTTCGACTGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCAGGAGCGGCGCGAGGGCCGCTTGGCCCGGTGGAATTTTGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : TGTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCACGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTGATCACCAGTGTCAGCCGCCAGTTGTCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCATGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGGGGCTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCCTGTGGCGGAAGGAAATAGATTGTGAACAGGCGGCAAGTGAAGGTTGTTAGTGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGACAGGGGTGGTCGGTCCGGTCCATATCCCTCCTGCGCTCCTTCGCTTGCTAAACGGGGGGGAACAGGCGCATCCCTCGCTGGCTGCTCCTTGACGAGCGT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 375237-375997 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABLSZ010000001.1 Pseudomonas aeruginosa strain S11 NODE_1_length_668578_cov_131.926, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 375237 29 100.0 32 ............................. TCAGCGCCTCCGGTTTCGGCTTCGGCGCTTTC 375298 29 100.0 32 ............................. TGTCCGGGGACTCGAACAAGATCGATGCGGCG 375359 29 100.0 32 ............................. ATGCCGATGCGGCCGAGGCCAAGGCCCGGGCG 375420 29 100.0 32 ............................. TCGTGGAGTGGACGGCGCCGCGTCGGCACCAA 375481 29 100.0 32 ............................. AAATCCTTGCCACCGAAGAAACCCAGAAGGCC 375542 29 100.0 32 ............................. GGCGAGAGGGTGACGACGGCAGAGACGAGCGC 375603 29 100.0 32 ............................. CACGGCGTCACCGGGGCGCTTCCGCCGCTTCC 375664 29 100.0 32 ............................. GCGGTAGCGAACACCGCCGACGCTTACCAGGC 375725 29 100.0 32 ............................. GCGCGGTACTGCACCGGCACCAGGGTAGACGC 375786 29 100.0 32 ............................. CATGTTGGGTTGGAGGGGGGAAACAACCAGGT 375847 29 100.0 32 ............................. GATGCGGAGCTGGAGCAGTACCCCGAAGGCAA 375908 29 100.0 32 ............................. AAGGACCGCGTCCGCGTGCTGCTGGAGACGAT 375969 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 100.0 32 GTGTTCCCCACATGCGTGGGGATGAACCG # Left flank : TGACCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTCGAACCTCCCAGCGCACCGCCCGAGTCGGTGCCGCCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGGCACAGGACGCAAGGGTGAGCTTCCTGGCCGTAGTGGTGGAAAACGTCCCGCCGCGCTTGCGCGGACGTCTGGCAATCTGGCTGCTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCGCCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATTCTGTACGGTAAGT # Right flank : GTGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCACGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCTTTGGCATGGATAGAGCAGTCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGACCGGGTCAACCGGAACGTCGAGCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACGCCCTTGTCGATGGCGGGCTGGGCGGGAACCGGCCAGAGCAGGGAGAGACCGGGTTGCCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTGCTCCGTTTCTGAGAGTCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //