Array 1 55837-53851 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBOW010000017.1 Bifidobacterium breve strain MSK.23.130 GPDHGCOO_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 55836 33 100.0 34 ................................. CGCTCCAAGGGGCCGTCACCGGCTACGGCCACTG 55769 33 100.0 36 ................................. AGGCTTTGGCGAGATACCAGGCGGACTTGTCCGCGG 55700 33 100.0 36 ................................. GTCGCGGTAGGCGACGATGAGGCGGCGGACCGTGTC 55631 33 100.0 36 ................................. ACCGGCTGGAACACGCAGCCGGATGGCAGGGGCCAG 55562 33 100.0 34 ................................. GGCAACCTTTGGGACGGCGCGCACTACGGCGCGT 55495 33 100.0 34 ................................. CCGTACCTCCTCGACGTTGATTCTGCCTTGCCGG 55428 33 100.0 35 ................................. CAATACTCGTGAATCGAAGCAAGGAAGAAATTCCA 55360 33 100.0 34 ................................. GCCAACTATCGAACCATCGTCTGCAAACACTTGC 55293 33 100.0 34 ................................. ACGACAAGACTGTACGGGGTTCGATTCCCCGCGA 55226 33 100.0 34 ................................. TTTTCGGTCACCATGGTGTTTCTATGACGCAAGC 55159 33 100.0 36 ................................. AACGCGAGGTTCGCGTACTGCAACGGGGTGCGCGGG 55090 33 100.0 34 ................................. CTGGCCGGTGGGGCCGGTGTCGCCTTTGGCCCCG 55023 33 100.0 35 ................................. GCCGCGAAAGGCAAGGCGAGCAAGCGGATCGGCAA 54955 33 100.0 33 ................................. CCCACAGAACCGGCACGAGAGAACTCGACGAAG 54889 33 100.0 36 ................................. CGTTTGGGTGTACCTCGAATCGCATCCGGTAGGCGG 54820 33 100.0 34 ................................. CGCAAACGATTGACGAGATCGTAGACATTGGAAA 54753 33 100.0 33 ................................. GGATCGTCGGCCGTGCAGATGCTCGAATGGAGC 54687 33 100.0 34 ................................. TTACCAACCCCGGAAGCAAGGCCGACCCGACCAT 54620 33 97.0 35 ..................G.............. AGACTGTTCGGCGGTGGTGGCATCGACTGCATCCT GG [54604] 54550 33 100.0 32 ................................. TGCGTCTCCAGACCGATCGGAATGGTCTCCTG 54485 33 100.0 34 ................................. GGCGAATACAGCCCTGCCATGGAATCGTCCATGA 54418 33 100.0 34 ................................. ACGCGCGACGTGATGTACAGGTGATTCCGCAATA 54351 33 100.0 33 ................................. CGTGCAAGCACCCCCGGAACCCGGCAGTTTACA 54285 33 100.0 35 ................................. TGCCGCAGGGCGAAACGACCTATATTGCGGTGATG 54217 33 100.0 34 ................................. GATTTGATGGGCATCTCCATGTGGATGTCCATAG 54150 33 97.0 35 ....................T............ AAACCGGGACGCAACCTCACCGCATGGCAGGCCGT 54082 33 97.0 33 ...................A............. TACGCGTCAATGTACGGCAAAGGCGACGTGTAT 54016 33 100.0 33 ................................. CTTTCATCTGATTGGAACGACGCTTCCGATTCT 53950 33 100.0 34 ................................. GTCCACCCACTGGTCGATGGCGCCGTCCGAACCG 53883 33 87.9 0 .........................G..CCT.. | ========== ====== ====== ====== ================================= ==================================== ================== 30 33 99.3 34 GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Left flank : TCAAACGGACTAAAAGAAACGCCGAAACGGCCCACAAAAATTTGACAAAACACACGGGGAGCGTGGATTGAAATGTAACCACCGGCACACCACCGCAATTGACCGGCG # Right flank : GCCGGATTAATACGTTGGTTGATGTCGGTATCGTCCCATCTATCCTTGATATAAGGATTTGTGATGGGGGTAACGATACCAGCTTGGTTCCACTGGTCAACATATGAGTATCGGATACGGTTCGGTGCGTATGTTTCGATCATTCGTTGATAGTAATCGCGTTCATTAAGAAGCAGGTCCACCAGATATCCGGGTTCGTTTGGGAAATTCTTTAGTGCGCGAGTATAAAGATTGTGGTGTTCGTCCAATACCAGAGCTGGAACGGAATCTAAGCGCAAGAGTTCTTTAAACATGACGAGTCGCCCAATTCGACCGTTACCGTCGGAGAATGGGTGCGTGGATTCGAACATCCAATGTGCTTTTGCGATTGCAAAAGGATCATCTTCCAATTGTGAGTACAAGCTGAATACCTGTTTCATGGCAAGAGGCACATCTGCGGGGAGTACCGTATGAATTCCCTCAAGTTGGCTGATGACGTTGGGCACTATTTTGTATCCGCC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.40,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 26399-27574 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBOW010000027.1 Bifidobacterium breve strain MSK.23.130 GPDHGCOO_27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 26399 33 100.0 34 ................................. AATAACTCTCAAATCCTCAACATGATTCGCAACG 26466 33 100.0 34 ................................. CTCTGCCGTACGGCGCAGATAGATGAATTGCCAT 26533 33 100.0 36 ................................. CCGCATATCCGCCCTGCTTGGTAAACGTCGTATCAG 26602 33 100.0 34 ................................. CGCTCGGATGCGGTCGAGTACGCCATCGGTGATA 26669 33 100.0 34 ................................. ATCCCCATCGAGTCCGAACGCGACAAGAACAACG 26736 33 100.0 33 ................................. AAGAGCATCGCGCATCTGACAGACGACGGCAAC 26802 33 100.0 34 ................................. AATATCCGCGGTCACTTCTACAGTTTCCGTGCGC 26869 33 100.0 35 ................................. ACCGTGGATAAGCCCAAGTCGGCCAACAGTCTGGC 26937 33 100.0 35 ................................. CTACAGTCAACAGTCCGCTGACTGGGCGTACCAAA 27005 33 100.0 34 ................................. ATCGTAAATCGGATAATAGTCTTCGCTCAGATGC 27072 33 100.0 36 ................................. ACGTGAAACACAACAGCAGTGGTTTGAGAAGATGGA 27141 33 100.0 36 ................................. AGCATGATATTACGTTCGGCAGTTGCTATGTGACGC 27210 33 100.0 33 ................................. TGGACGTGCGCAACATCACGCGCGACGATGGGC 27276 33 100.0 33 ................................. AACTTGTCCAACGGCATCATGGGCGTGCTGGTC 27342 33 100.0 34 ................................. GGTCTACGGCTACATGGCCGTGGCGGCCACGCAC 27409 33 100.0 34 ................................. CAAGGGTCCGCACTTCCATGGTTCTACTCCCAAG 27476 33 100.0 33 ................................. AAGGTACTCGCGGAAACGCAGGGCGTGGCCCTG 27542 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 18 33 100.0 34 GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Left flank : GAAGCCAAGGCCGAGTATGGCTTGGCCAATGAGGTCATAGAGTCTGAATGGTTTAAGTAGCTTGGACTGCCAGCCTTACGAACTGTTGAGGCAGTCGAAAAAGGAGATGGCACTATTACGTGTAGTTTGTTCCGTTGCAATTGAGGTATGCGTAAAGGATCGAGCATCGTGGTGGGCGGTGACATTTGCCTGTTGATGGGGTGGCAATGCCTGAACTGGCTGCGTCGAGGGGAGGACGGTGATGTCGCCGATATCGTGCCATGTGGCCGGTGCGACCTTAAAGTTCTCATGAATTACTCGTCCTTTCGCACTGCAGAATGACGTGGAGATGAGGGTTATTTTCGTCTCTCTGGTTGCTTGATGACTTCATAGTGGCTAGTGCGCTGGTGTTTTTGACTTTTGCGGACGGTGCCCAAAACGTCAATGACGATCTGCGATACAATCAGTGTTGAAAATGGATGATTTTGCCCATATCGTGGGCGAAGATGTCCATTTTCGCG # Right flank : AAGGTACTCGCGGAAACGCAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.50,-8.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 23-256 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBOW010000060.1 Bifidobacterium breve strain MSK.23.130 GPDHGCOO_64, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 23 33 100.0 33 ................................. GTCAACGAATGGTACGCGAAGGCATGCGACGAG 89 33 100.0 33 ................................. CGCGCCGGGATGCTGCCGATCCTCGTGGGCGTG 155 33 100.0 35 ................................. TTTTGTTGCTGGAATTATAAACACATTCTAGTGGG 223 33 78.8 0 ....................T..CTG..C..TA | T [242] ========== ====== ====== ====== ================================= =================================== ================== 4 33 94.7 34 GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Left flank : GGAAACGCAGGGCGTGGCCCTGG # Right flank : GAAAGTGGGCCGTGTGAGCGTGTGGAAAGTCTCCAGATGA # Questionable array : NO Score: 8.60 # Score Detail : 1:0, 2:3, 3:3, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [10.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,1.01 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //