Array 1 44869-46361 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADKNL010000010.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 98A Scaffold10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 44869 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 44930 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 44991 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 45052 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 45113 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 45174 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 45235 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 45296 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 45357 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 45418 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 45479 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 45540 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 45601 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 45662 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 45723 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 45784 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 45846 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 45907 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 45968 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 46029 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 46090 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 46151 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 46212 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 46273 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 46334 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 62493-64579 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADKNL010000010.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 98A Scaffold10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 62493 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 62554 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 62615 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 62676 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 62737 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 62798 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 62859 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 62921 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 62982 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 63043 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 63104 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 63165 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 63226 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 63287 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 63348 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 63409 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 63470 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 63531 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 63592 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 63653 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 63714 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 63775 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 63836 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 63898 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 64001 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 64062 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 64123 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 64184 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 64245 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 64306 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 64367 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 64428 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 64489 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 64550 29 96.6 0 A............................ | A [64576] ========== ====== ====== ====== ============================= ========================================================================== ================== 34 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //