Array 1 14973-13576 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJJF01000002.1 Methanohalophilus euhalobius strain DSM 10369 Me10369_scfld_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 14972 37 100.0 39 ..................................... ATCTTCCAGACTGGATTCTTCAGGCAATCCTAACAACCG 14896 37 100.0 37 ..................................... TCTTGGGTGTTTGCATGTGAAGAGCCATTCATGTATT 14822 37 100.0 35 ..................................... AGTACACACCTATATTATATAAAGGTTACTATTTT 14750 37 100.0 38 ..................................... TTTAGAAGTTTGACTTCCAAAAATCTTTTTAACAGTGT 14675 37 100.0 37 ..................................... TCTTGGGTGTTTGCATGTGAAGAGCCATTCATGTATT 14601 37 100.0 38 ..................................... GAACGGTGCATTATATGCAACTACAGCGCTTGAATCAT 14526 37 100.0 40 ..................................... TCTTACTCATTCCAAGATGTTGTTTTAGTTCATCTGTAGT 14449 37 100.0 39 ..................................... TGACGACCCAATGAAGGAAACTGCACCTATTCACTTACT 14373 37 100.0 39 ..................................... AGAAAGCAGTCAGAAAATCATTTGGAAGAACTCATTAAT 14297 37 100.0 38 ..................................... TCTTCAACTCTCATTTCAAGTGCATGCACAACTGGTTC 14222 37 100.0 40 ..................................... TGTCTCATATTTCCAACTCCATAAAAAATAGGATACTCTT 14145 37 100.0 40 ..................................... TTGTGTGTATTATTGCTGTTTTTTCATTGCTCATTTTCAG 14068 37 100.0 37 ..................................... TCTCTGATGCTCTCCTCGATTGCCCGGGCACCTGTTT 13994 37 100.0 38 ..................................... TTTTCAGCATAATCCTGTAAGTATTGCCACAGTTTATC 13919 37 100.0 37 ..................................... ATTCAATTGCTTTTCTTATCCCTGCATCAGTCCAGGC 13845 37 100.0 45 ..................................... CAATGTATTCATAGAGTATGCTGTCTTTCATGTTTCTGCCTCCAA 13763 37 100.0 40 ..................................... TTATTTTTTTCAGTCTTCACCGTTAAACCAATTCGGATTT 13686 37 100.0 38 ..................................... ATCTTCAAGATACATCAACTGCGATCTCATATCTGCAA 13611 36 97.3 0 ......-.............................. | ========== ====== ====== ====== ===================================== ============================================= ================== 19 37 99.9 39 GTTGAAAGTAGCTCCCGAGAAAATAGGGAATGGTAAC # Left flank : TGACGTTTTGATTAGTGGATATATCCACCTGTACAACCGTGGTTATCATGACACTCTAAATAATAAGAAGAGGATTCATATAAACTTATTGTATTTATTCTGTACAGGGAGTTATTTCTACATGAATTAATGCAATAAACGCACCTATATGATTTTAAATCATGAATACGTCATAGATTTAATTCGATTAATGAACTATGTGTAAAGACCTTTATAAGGGGTTGAGCCAAAAGGAGGTCTGTACACACAGATTATCATTTTCAGGCAATTGTGGGTTTAATTTAACCTTAAACAGACATTGAATATTTATCAATCTTTTTATTATGAAGCCTGCAGATAGTGTTTTACTGATGTTAACAGCGTTAATTTTCACGACGCCTCCTGCTATCGATTGTACAGACCTTTTTAAAGGGTACTGGCAAATTGAGGTCTGTACACTACCCCCTCAAAAAGAAGTATTCTAAGGTCTCCAAAAAGGATTTAAAGGAAAAAAACATAGG # Right flank : TCGTCATCGACGAAATGGAGATCTATTCCTTGATTGATCAGTTTCAAATATAAATTCATCTCTTTTGAAACAGGAGATTCCTTCCGTAAGGTAGGAGAGATAAGAACAAATTTTATCGAAGTTCTGGAAGAGTAACGTTAATCTGAATCCTTAATACTACTTTTTCAAATCAAATCACCTCTAAAAAATACAATGAAGTCCTACCTCTCCTAAAAAACTGAAATAACAAAACTTATACAACTTACCATCAATCATTTACTGGAAATATAAAATATGAAAGGGGTACTAAAATTGGGAGATATCGAACTCAATCCTTCACAATCACAGGCAGTTGATTATACAGACGGACCACTTCTAATACTAGCAGGTCCTGGTTCTGGCAAAACCCTGACCATTACGGAAAAGGTCGTAAACCTTGTGGATGAAGGATTTTCTCCTGACCGGATACTTGCCCTTACCTTCTCTGAAAAGGCCGCAGGAGAGATGGAGAAGAGAATTGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAAGTAGCTCCCGAGAAAATAGGGAATGGTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 28052-30353 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJJF01000002.1 Methanohalophilus euhalobius strain DSM 10369 Me10369_scfld_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 28052 37 100.0 34 ..................................... TTTATCCCGCCCCATAGGGACAATTACCTATATG 28123 37 100.0 39 ..................................... TCATTTTTATTATTTGCAGGAAATACCCAATTCTTAAAA 28199 37 100.0 36 ..................................... TTATTTCTCCAGGATTATCGCATACTTCCAGGACAT 28272 37 100.0 38 ..................................... CATGTTAGCCCCGTCGAACCAATCCATAAACCAATATT 28347 37 100.0 38 ..................................... TCAACGTATAATTTCTACTTACTAATGTATTTCTCAGG 28422 37 100.0 39 ..................................... TGTCTACATCTGCGGATACATATAGTTGATGTGTGTCTC 28498 37 100.0 37 ..................................... TTACCATATGAGCGCTGAAACCAGCGTCTGCATTCGA 28572 37 100.0 37 ..................................... AACTTGACAGTACTAAACTGTACTTCATTATTGACAA 28646 37 100.0 40 ..................................... TATGGATCGCTTTTAAAATGGCCTGTTCACATACTGCCGA 28723 37 100.0 39 ..................................... TTCAATTAGTCCCTGCAACATCCAGAACATAAGGTTAGT 28799 37 100.0 38 ..................................... ACTAATAAACAAGTTGATGAAGGTACACTTTCAGAGGA 28874 37 100.0 41 ..................................... ATTTTCGGGAATGGTACCTTTGTTGTTGCGGTTGCTTTTTT 28952 37 100.0 40 ..................................... ATCCTGTTATAGAGACTTTATCAAATAGATATGCTGTAAT 29029 37 100.0 39 ..................................... TATACTGGAGAAAATTTGACAAGAGTTGCAATTACATCC 29105 37 100.0 41 ..................................... TTAAGTGCTTCGACAATTGGAGCAATTCTTGCGCACTTCTG 29183 37 100.0 40 ..................................... AAGGAAGAAAGGTGCTGAGGTGAGTGATGCTGAGATTGAG 29260 37 100.0 39 ..................................... CCTCGCCCAGATTTTTCATGGTCTTGCGGAGTTTTTCGA 29336 37 100.0 41 ..................................... ACACAAAAAACAAGATATTACAATGACCGTGGAGAAGACGT 29414 37 100.0 37 ..................................... GATAATAAAAGGTGTTGCAGGAGAATTCTATCCATGT 29488 37 100.0 39 ..................................... GCTATCTCTTTAGCAGCATCAGTTTTAGACATTCCTAAT 29564 37 100.0 39 ..................................... ACTTAACTTAAAGGATACTGCACCATCTGAACCTGTTGT 29640 37 100.0 42 ..................................... AATAGATTTTCACTTACCCCGCTCATTCCAATCGCCCGATTA 29719 37 100.0 42 ..................................... CCTCGTACCTCATGTAAAGCGTCAAGATACCCTCTCATGAAT 29798 37 100.0 34 ..................................... CCAAAGTATTGATTTTTTTGTCTTGGAATTGTTC 29869 37 100.0 39 ..................................... CGATGACCCCTGCAAGGTGATCAATTATTTTTACATTAG 29945 37 100.0 37 ..................................... ACAACAGCAATGGTAATGTTATTGTTTCTGCAAATTT 30019 37 100.0 37 ..................................... ATATATTTCACACGCTGAGCATTTACAATTTCAAAGA 30093 37 100.0 39 ..................................... AAATCAAAAGACGGCAAGACTTACGGTGTAGATGAACAG 30169 37 94.6 38 ....................A..T............. ATCTTAAAAACATTTTTTAAGGTTTGTGGTCTTCGTGT 30244 37 94.6 36 ....................A..T............. CGATAGCTACAGCTGACCTGTCATCCGGATTCATAT 30317 37 89.2 0 ....................A..T.......AA.... | ========== ====== ====== ====== ===================================== ========================================== ================== 31 37 99.3 39 GTTGACATAAGCACCCGTGATAAAAGGGAATGGTAAC # Left flank : ATGGTTTAATGAGAATTCAATATAGTGTTTTTGCAGGTGAAATTCCTTCGAATAAAATAAATGAATTGTCCTCCCTACTATTTGACAGTAATCTAGCAGAAACAGATAATATCACAGTATTTCCTTTATGCAGGGAATGTCTGAATAATGTCCTTACATTAGAACCATTGCCTCAGGAAATCAAGCATCTGTCATTATGATGTACAGACCTTTATAAGGGGTTGAGCAAAAAGGAGGTCTGTACACACATATTATCATTTTTAGGCATCAATGATAGAAATCTTACCTAAAACGGACATCGACTTTATATTAATATTTTTTTGATGATGGCGTATGGTAGTGTTTTACTGATGTTAACAGCGTTAATTTTCACAACGCCTCTTGCTATCGATTGTACAGACCTTTTTAAAGGGTACTGGCAAATTGAGGTCTGTACACTACCCCCTCAAAAAGAAGTATTCTAAGGTCTCCAAAAAGGATTTAAAGGAAAAAAACATAGG # Right flank : CATTACTTCCTTTTATGCAATTTATTTAGCCTATGTAAAAAATTGCTCAATAAATATAGGTGGATTAACATGGAACTTAATGAAAAAATGTATTATGCTTGCTCATTATGCAGTACAGAAAATAAGGTTGTATGGCACAAACCAAAAACGAAGGTCTGGGAAGAACACAAACGATACATCGATTTAGATCAGACAAATTCATAGACTCCACAATACTTTTGGTGTCTAAAACACAATCGTGCACATTCATTGAAAAGAGAATGCCTGAAACATAAGGCTACAATTACTTTCAATGGTAATGAAGGAAATAGGGATTGTAATACAAAACAATTATCCCATAACGACACACTTGATGAAATCAGAAAAACCGTTACTGAAAAGTCCAATCAATTGGATTGGAAAAAGTTATTGGCAGCAACAGTCTTCCATATCCCTGCACCAGGGAATCAAGGTTGATATTACCCGACATAATATATTGTCAGCGTGATCCAGGTACAAAT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGACATAAGCACCCGTGATAAAAGGGAATGGTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.60,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 184413-191617 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJJF01000012.1 Methanohalophilus euhalobius strain DSM 10369 Me10369_scfld_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================= ================== 184413 30 100.0 35 .............................. GCGTGATAGGAGAAATTGGAACTGCAGAAGTTCGG 184478 30 100.0 35 .............................. TGCTGTTGTGAGATTTGATTCATAGATTTTATCTT 184543 30 100.0 37 .............................. TGAGGTTGGGTAAGGAAGCACTTTTCCGCATTCTTTA 184610 30 100.0 36 .............................. TAGATTAATAGAGCATATATGCCTGCCTCAATCATA 184676 30 100.0 36 .............................. CATAGTAGGTATCGTCAGCAAAGTGATGCTGACAGG 184742 30 100.0 35 .............................. CTTGTGACACGCATCACACCGTTTGGACCTCTCTT 184807 30 100.0 36 .............................. TTAACAACATGTTCCAACGTTGTTGGTCCGGAACTG 184873 30 100.0 37 .............................. TTAATTCATTAGCCGCAAGTTCACGGACTGCGGTTTC 184940 30 100.0 35 .............................. TAAAATAAGAAGGAATGGTTAAAATGTACGACAAA 185005 30 100.0 35 .............................. ATAATAGGAGGCCAATATAAGAAAGAGCAATAAAC 185070 30 100.0 37 .............................. TAGTCATAGTTACATCCTGTGCAATTGCGAGATCAGC 185137 30 100.0 36 .............................. GGACATTACATTATTACCCGTGATAGAGCCACATTC 185203 30 100.0 37 .............................. GTGGTGGAACTGGCACTCTCTGGGTAGGACTTGCAAG 185270 30 100.0 37 .............................. GTTGGTGTAGGGATATTATCTAAGGAATGATATGTAT 185337 30 100.0 37 .............................. GTCACAAGCGGGGCAGCAATCACAAAAGGACAACTCA 185404 30 100.0 36 .............................. TTGTGGCCGCATATATCGACACTACCGGACTGACTG 185470 30 100.0 36 .............................. CATACTAATCGTTGGAGATCCGGGTGTAGCAAAGAG 185536 30 100.0 36 .............................. ACTACAATTGAAGGTAGCCTCGATGCCAAGAACATT 185602 30 100.0 36 .............................. AGAGACAAACTAACGATGTTTCTCAACAATGAAAGT 185668 30 100.0 37 .............................. TCTCAATGATTTTTAGAGCCTTGCCGGCAGGATCTTC 185735 30 100.0 36 .............................. GCCGGATGGTTTGAAGTCTCCAACGAGGACATGATG 185801 30 100.0 36 .............................. TACTTACAGAGCAAAAATCGTGACAAAGCAAAAATC 185867 30 100.0 36 .............................. TGCGATATGGGGTAACATTTGGAGATGTGTAGTAGA 185933 30 100.0 36 .............................. TTCTTCGATAGGTACTTTCATGAATGGGAAAGCATA 185999 30 100.0 36 .............................. CCGGGAAAACACCCGTGACCGGAGGAGTTGCATATC 186065 30 100.0 36 .............................. CCAGCTTTTTTAGTATTATTATTCGCATCAATTACT 186131 30 100.0 36 .............................. TTAAACAATAAGGAGATAGGAAAATATGCAAAACAA 186197 30 100.0 36 .............................. GGATTTTATATTATTGCCCGTGATAGGGCCACATTT 186263 30 100.0 37 .............................. ATAAAATAAAGGAATGACTAAACATGAATGCAGAACA 186330 30 100.0 36 .............................. TGATATAGGCGAACAGAATGTTTTGCTCTCCGGCGG 186396 30 100.0 37 .............................. ATTTTCTCCAGTCCTTCAACTGCGAAATACAGGTATA 186463 30 100.0 36 .............................. AGTGACTGGGTAAGAGAACAATTATATATTTTAATA 186529 30 100.0 35 .............................. GTAAATGTCTCACCTGTATTTGCTACTCTGACAGT 186594 30 100.0 35 .............................. TTTACAAATCCGCCTTTATAATATTCGATCTTCAT 186659 30 100.0 35 .............................. TTAGGCAACTCTACATCATTGGGAAAGGCATCTGC 186724 30 100.0 36 .............................. TTCTCTACTGCTGTTCGGATCTTTTGTTCGTTAAAC 186790 30 100.0 36 .............................. ACAGGTAGACCAGTCTTTTCCCCTATGTACTTAAGC 186856 30 100.0 36 .............................. TTCATAGTCCCTTTTTCAGTATATCTTTCGGTTTTA 186922 30 100.0 35 .............................. TGGTATTGACCCATTTCGTCTATAAAACCATCTTC 186987 30 100.0 36 .............................. ATCTACAAGCAAGAATTTGAAGTTGTTCGTAATGGT 187053 30 100.0 36 .............................. GTTTGAATAATTTTCATACGGATACGTAATGAGATC 187119 30 100.0 38 .............................. CAACTTGTTTCAATTGTTCACCGGGCGACTGCTTGCGG 187187 30 100.0 37 .............................. TTTGCATCATATACACTGACCCCCATCTCCTTGAGAA 187254 30 100.0 36 .............................. ATCTCTCATGATGTAGATTTTGACGAACTCTCACTG 187320 30 100.0 36 .............................. CGATAAAGGCGCTCCACCACCGCCCAGATAAACATA 187386 30 100.0 35 .............................. TCGATTTGTATTTGGGAACAGACTGTTAAAATCTC 187451 30 100.0 38 .............................. GCTTCAATCCACAAATCCCGTAAGCATCCGATGCTATC 187519 30 100.0 35 .............................. GATTCATACATTTTCGTACCGTCAGGCTTAAAAAA 187584 30 100.0 41 .............................. GCCGTTTCTGAACGTGAACTCGAGTCTGCACTCTATGCAGC 187655 30 100.0 37 .............................. TCTATGAAAGAGGGGAGTTATAATGAGTGAAGATATT 187722 30 100.0 34 .............................. TAAACCCGGGTGTGGGGTAGGTATATATTTTAAT 187786 30 100.0 33 .............................. GCTCCTGTGCCTCTTTTGCACTCATTCCAGGGA 187849 30 100.0 38 .............................. AGTTTCAGAACGGCTTTTTCTATATCCGTGGTTTTTTC 187917 30 100.0 42 .............................. GTAGGTAGATTTGAAGCCTGGTTCACAAATTTTGAATTACGG 187989 30 100.0 35 .............................. GATATTGCTTTGCCCTGTGCTGGAATTGATTGCAT 188054 30 100.0 35 .............................. AAAATATCAATGCTACGTATTCTTACGACTACAGA 188119 30 100.0 36 .............................. CTGAGTGAGTGGAGTGATCATACTTCTCTGTTTGTT 188185 30 100.0 37 .............................. AAGTGAAACTAGGTGTAGCATCCATGCCGGTTGGTGG 188252 30 100.0 38 .............................. ATCATAGTCATTGCTTTCCCGCCGCCGATTTGCTGATA 188320 30 100.0 38 .............................. TCTATATATCCTTTTGAGCCTGCAAAATTCACTACAGT 188388 30 100.0 38 .............................. ATCCGGGTGTCTATCCAATGCTCATAGTCCATTTTATC 188456 30 100.0 38 .............................. TGGAATTTTTGCGCTGGCCATGCGTGCGCACAAGGAAA 188524 30 100.0 37 .............................. GAAAGCCTGTCAGACCTCTCAAAATCTGTGATGTAGA 188591 30 100.0 35 .............................. CAGGCCAGCAGTTCGAAGAGTTGAGGAATGTGGCC 188656 30 100.0 36 .............................. CTTCTGGAAAAAATGTCAGAGAAATACGAGACTGCC 188722 30 100.0 34 .............................. GATTTTACGAAGTTTTCTCAATGCCGGGGCGCTT 188786 30 100.0 39 .............................. GACCGAGACAGGGTATAACAAAATCGCCATCGCAATATA 188855 30 100.0 37 .............................. CTCATATAATCTTCATCCCAGGGGCCTACCCTGGATG 188922 30 100.0 36 .............................. TCATTTTTGCACAACCATTTTCATGGCTCCTGCTAG 188988 30 100.0 37 .............................. GCATGAGGTGCGTGGATATGTCCGCAGGGGCATACAG 189055 30 100.0 39 .............................. CTGATAAATTTACCATCCTCAATGACCCCGGATGTACCG 189124 30 100.0 39 .............................. TATGCAATTGCATGTATGCTGTATCCCCCTCTTCTCATA 189193 30 100.0 35 .............................. TTTGCACAACTCAACAGACAACTCCGCAAGTTCCT 189258 30 100.0 40 .............................. AGTTGCTCGAACGCCTCGTACAGCATGTGCCGGGCATATG 189328 30 100.0 36 .............................. CATAGTAGTATATGTAGTATAATAATGCTACAGGAG 189394 30 100.0 36 .............................. ATACATTCAGGAAATTGGATCCAGAAGAACAAAAAC 189460 30 100.0 35 .............................. ACAGGACACTCATTTGTGAAGATCCTCTGTTCCAG 189525 30 100.0 37 .............................. ACGGAATTGACTATCTTCAGCAATTGGCTGGAAAAAT 189592 30 100.0 37 .............................. TTTTTTGGAGGAGTGACTGACATGGTGAGATAATGGC 189659 30 100.0 35 .............................. AAAAAAGAAAGGGCAGCAGTGAAAATGTCTGCCTC 189724 30 100.0 36 .............................. GTACATGAAGCCCGTACATGAAATTATCCCGGAAAT 189790 30 100.0 36 .............................. TAGATCAGCGCAGGGGATTGTTAAAGGGGTTAATGG 189856 30 100.0 45 .............................. AGAGAATCCATACTGCAATGGGACTTTCCTTCTGGAGCATCAATC 189931 30 100.0 38 .............................. CTTTATCCGGATTCACTTCTGTGGTCCTGATCCATACC 189999 30 100.0 38 .............................. TGGACATGTCTGGTCCGGACGAGTACAGGCCACCTTCC 190067 30 100.0 35 .............................. CAAATCTACACAAAATCAAAAGACGGCAAGACTTA 190132 30 100.0 36 .............................. GTTTGTGGGTGTATCGATCGCACCTGAAAGTGATCT 190198 30 100.0 33 .............................. GAAGACAACTATCTTCAAACACTGAAAAAGGCG 190261 30 100.0 37 .............................. TTGCGAGTATCGGGAGCATGGCTTCAGTATTCCTACC 190328 30 100.0 35 .............................. TTGTGATACTACAGTATGGCAAATCGTATAACTGC 190393 30 100.0 34 .............................. AAAAATCAAATCAATGATAGACAACGATTATATT 190457 30 100.0 36 .............................. TTTGCAGCGTCAATAATGTCCTGTCCTTTATACATA 190523 30 100.0 36 .............................. GTTAACGCTTGCGAAAAACAAGGATTGTAATATTCT 190589 30 100.0 37 .............................. AAGATCACGTCATACAAATCTAGGTCGTTGAGATGTA 190656 30 100.0 37 .............................. ACTGGATTTGTGAAAAGAGTTAAGAAGAAGTGGTGGG 190723 30 100.0 35 .............................. GTTGAACATTTCCACTTACATTTCCAGTTGAATAA 190788 30 100.0 36 .............................. CTCAAGGGGCTGAAGAGGCTTTCCACATTTCTTACA 190854 30 100.0 36 .............................. TGGCGCTCGTGAACTTTTCTGTGATTCTTCTTTAAT 190920 30 100.0 37 .............................. CAGGCCAGTTGTGTCTTCAATTGTCTCTTTCAACATG 190987 30 100.0 38 .............................. CACAATCTGCAATAAGGGACGAGGGGATTTTCTCCCCC 191055 30 100.0 39 .............................. ATTGTTGTGGGGGCGTATATCTCCGCCCCGCATCTACTC 191124 30 100.0 35 .............................. AATTTCGTTTAATGCACCGCGTGATTGATAATAAA 191189 30 100.0 37 .............................. TATATCATCCTCGCTGCAAAACCACGCCGATTGCGGG 191256 30 100.0 35 .............................. GTCTTTGCTGTTACTGCATTGAATCTCAATGTATT 191321 30 100.0 36 .............................. GCTTTCTTTGCTTCTTTCGCTTGTCTTCTAATATCT 191387 30 100.0 40 .............................. ATCATGATTTCTCTCATGTCATGACCCCATGTAGTTCAAC 191457 30 100.0 36 .............................. GAAAATATATGTGATGTCAATTTGCTTGACCGTGGT 191523 30 100.0 36 .............................. TGATAAGTAAGCATGGCTAATCCAACACCTAAGTAT 191589 29 86.7 0 .................-......A...TT | ========== ====== ====== ====== ============================== ============================================= ================== 109 30 99.9 36 GTTATAATCAGACCTTAGAGGGATTGAAAG # Left flank : ACCACTTGTTATGTGGTGGTAATATGTATGTGATTGCTGTATATGATGTGGGGATTGATCGTCTGAATAAGGTTCGTATATTCCTTAAACAGTATCTCAATTGGGTTCAAAACAGTGTCTTTGAAGGAGAACTTACAAAAGCTGAATACATGAAGGTAAGATCGGAAGTAAAAGAACTCATTGACGAAGATTTTGATTGCGTCTTTTTTTATCATGTCAAGGATAAGAAGTATCTTGGTTTTGATGAAATGGGTGCCAGAAAAACAAATATTGATACGATAATCTGATGTTTCCATGACATTTTCGTGGATGTTTATAAAGCTACTTCCAAATTAAAGATCCACGAAAATGAGCAATTTGTATTTTGGATTTTTGCTATATTTGCAGACTATTCATAGAATTGCTATTTTCAAACAAACGCTGTCATAGAAGCAATTGCACACTTTTTTGTTGAATTATCTTCGTCTCAATAAGCCTAAAATAAGATAAAGTCTATCTTG # Right flank : TTTTCATTTAGACGCTATTTTAAATGAATCAAGTAATATAAAGTAAAATTAAACTTTCTGATGTAATATCCGAACTGTATATACAGTTTTGAAGTATATTTTATAACGATAAAAACATTTATTAATATGGCCAGAGTTCTAAATATGAGGTTATTAGAAAATGGACGGGTTTGTGGGAGATCCCTTTATAACTTCCGGGTTACTTGCGATTAAATTGAATACCGGTTTCAATATTGGCGAATGCCCTGAAGATAAACTGAAACAGGCAAGTGAACAACTTGTAGAATTATATCTAACTCCTGCTTGGTCAAAGGAGTTACAATCTATATTTCCCAATAGTACTTACATACAAAGTGCAAAAAATTATGATAAGAAAGGCAAATCAATAGAATTCTTGCATGATCTTATAGAGGGCTTAAATTCTGAAAACAATAATGATGGGTATTGCGTATTTTGTGGCAGCCCTGCACATCAAAGAAATGATGGCAAACCATTTGTAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAATCAGACCTTAGAGGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //