Array 1 353-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_VWFB01000025.1 Bacteroides intestinalis strain BIOML-A2 scaffold25_size41673, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 352 47 89.4 30 ......G.C...........A...................A.....T GCTGATGTGTTTGAGATAGAATACACCAAG 275 47 100.0 30 ............................................... ACGAAAGACATCGTAGATAAACCCTTTCTC 198 47 100.0 30 ............................................... GACATCATAACCAATCCGACACCGGAAGAT 121 47 100.0 30 ............................................... TTCAATTCAAAGTTAAGTTCTTTGGTACAA 44 44 93.6 0 ............................................--- | ========== ====== ====== ====== =============================================== ============================== ================== 5 47 96.6 30 GTTGTGATTTGCTTTCATTTTAGTATCTTTGAACCATAGGGAACAGC # Left flank : CAAGAAGCACATGGCTATTGCCAAGGGTTTGCTGAGTGAGGATGATTATTTGCTTCAGGAAATTCTCTTTAATCCGCGCACTCCCTCGCAAGTGGAAAATATTCGTCTGGAGCTGAAGAATTTGCTGGAAATTATCAGTACGAAGGATGCGGAAGGGATGAAGCAGTATCTGACGAAGATTAGGGAAAAGATAAAATAGATAGGTGAGATTAAGGGATTGAAGAGAGGAGGGGGACGAAAAAGGAAATGGGGCTTCTCTCTTCAATTTGTTAATAAAGAGAGGTGATGATATTTAGGATTAGGTAGGGGCATACTTATTTCTAAAATTATTGAAAATAGTCAAATATTGGCAGGAATGATATGAAATTCTCGTATACTACTTTATTTGAATTATTGTAAATGACTCTGTGTTTGTTTTGCTAGAACCATATTGTAACTGACTTCTATTTAAGTAGAACCATTGGAAACAGTGCATAGTATTCCGTGAGAAGTGCCCCGTC # Right flank : C # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCATTTTAGTATCTTTGAACCATAGGGAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.83%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.00,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 30232-29954 **** Predicted by CRISPRDetect 2.4 *** >NZ_VWFB01000044.1 Bacteroides intestinalis strain BIOML-A2 scaffold44_size30273, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 30231 47 100.0 30 ............................................... CTAACACACTCTGGTGATTTGCTACCAAGT 30154 47 100.0 30 ............................................... CCTGGCTGTCAGCCTTAGACATCTTCAATG 30077 47 100.0 30 ............................................... AATTTGACAAATTCTTGTTGTTTGATACAA 30000 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 4 47 100.0 30 GTTGTGATTTGCTTTCATTTTAGTATCTTTGAACCATAGGGAACAGC # Left flank : ATAGGGAACAGCCCGCAATAGCATCACGATGGCGTTCAATC # Right flank : ACGACCTACGTTACATACTGATATCCAATTGGTTACAAACCATTTTTGAATTACAAAAACAATACTGTTTTTAATTAAAAAATCCCGCATTTAAGCGGGATTTCTTTTTCTAGAAAAGCTCTAATTGCTGGCCGGGAGTATTTATGTCCAAAGATCTTTTCCCATAAAACAACTCTATATTTCCAAATTGCTTATCTGTAATACACATAATTCCAACCTGTCCATGCTCCGGCAAGAAAGATTTAACTCTTTTTATATGAGCTTCTGCATTCTCACTACTAGCACAATGACGAACATAAATAGAAAACTGAAACATAGTAAAGCCATCTTTCTGCAGATTCTTTTTAAAATCTACATATGCCTTCTTATCCTTCTTTGTTTCAGTAGGTAAATCAAATAATACAAGTACCCACATAATACGATATTCACTAAATCGGTTCATCTCACATTTCCGGATATATTATTCTACGTAGTTCACCACTAAAGCATTTATACAGAGA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCATTTTAGTATCTTTGAACCATAGGGAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.83%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.00,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //