Array 1 18089-16997 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_FZZJ01000032.1 Neisseria meningitidis strain Neisseria meningitidis isolate R266, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
     18088	    36	  97.2	    30	........G...........................	GGACGGCGGTTCTAAAATATGAAAACTCAA	
     18022	    36	 100.0	    30	....................................	AAACTCAACGCATCTAACATAGTTCACACT	
     17956	    36	 100.0	    30	....................................	GGTCAGATTATAATAACGTTGAGCGCGTGT	
     17890	    36	  97.2	    30	...............T....................	TATCATGATGAGCATATTTATGAAGAGGTA	
     17824	    36	 100.0	    30	....................................	CGATTTACCACCCATAAAACCACCTCAAAA	
     17758	    36	 100.0	    30	....................................	TAATTTGCGTTTCGTGTCGCTCATAAACCC	
     17692	    36	 100.0	    30	....................................	ATAAATCAATACCGTGAAAACCTCATGTGT	
     17626	    36	 100.0	    30	....................................	AAAAACTTTTTAGGGGGGTCGGAAAAATAC	
     17560	    36	 100.0	    30	....................................	ATTTATATTATTTTTGATTTTGATTTTTTT	
     17494	    36	 100.0	    30	....................................	ATAAAAAATAAAAAAAACCAAAAATAATAG	
     17428	    36	 100.0	    30	....................................	ACAAATCAATACCATGAAAACCCCATGCGT	
     17362	    36	 100.0	    30	....................................	AGACTTAGCACGTTTAACTTGCTTAACAAG	
     17296	    36	 100.0	    30	....................................	CAAAAACTTTTTAGGGGGGTCGAAAAATAC	
     17230	    36	 100.0	    30	....................................	CAAAGCTATAAACACGTTTATCTGTTGTTA	
     17164	    36	 100.0	    30	....................................	ATGGGGTATGCAATTACATCGCTTGGGTTT	
     17098	    36	 100.0	    30	....................................	AAACCGCGTTCAAAGAAGGCGACTGCCTCA	
     17032	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        17	    36	  99.7	    30	GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT	                              	       

# Left flank :   GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG
# Right flank :  ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG

# Questionable array : NO	 Score: 6.25
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:55.56%AT]
# 	Reference repeat match prediction:         R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.90,-0.40] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [0-2] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.68,4.5   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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