Array 1 27028-27208 **** Predicted by CRISPRDetect 2.4 *** >NZ_CCRF01000073.1 Caldibacillus thermoamylovorans strain 1A1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ============================================ ================== 27028 32 100.0 41 ................................ AGATCGTGATGGTTATACGCATGGATTAGTTGATGTATTTC 27101 32 100.0 44 ................................ GAAGGGTGATTTTGCTTCAGGTAATATCTTGAGAGTTGAATTTC 27177 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ============================================ ================== 3 32 100.0 48 AATCCCCTAAATCGGGTCATTATCATTGTTAC # Left flank : ATTGTTCCAACACCGTTCAGACACAGAAGAATGGGGACTTCCAGGCGGGGCAATGGAACTAGGCGAAAGTTTGGAGGAAACTGCCAAACGGGAATTACTTGAAGAAACAGGGTTAAAAGCAAGAAAATTTAAATTCATTGATGTATTATCGGGAAAAGAGCTTTACTTTAAGTATCCTAATGGTGATGAAGTGTATAACGTTATATGCGTTTACCTAGCCAAAGAAGTTTATGGTGAATTGTCGATGACTGATGGAGAAAGTATTGATTTAAAATACTTCTCACCAAATCACTTACCTTCTAATCTTGATGATAGAGCGAAATTAATTATTGAAAAACACTTTAGATAATATCTGTTTCGAACATAACAACGCTTGGAAAATTGCCCAAGCGTTGTTTTTTCTGCTAGTTTTATTGCTAATTCGTGTTCGATAGCTATTATTTTTTACATGAGTATTTTTCACATTGATTGAACTGCTTAACTTCTGGACAGTCTTTTCT # Right flank : TATTTCCAAAACGTTTTAACGGTTGCTAAAAAGTTT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCTAAATCGGGTCATTATCATTGTTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 9112-7822 **** Predicted by CRISPRDetect 2.4 *** >NZ_CCRF01000075.1 Caldibacillus thermoamylovorans strain 1A1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 9111 37 100.0 38 ..................................... ACGAAACTTGATTATTGGTGGTATTTAGAGTTAGCGAA 9036 37 100.0 37 ..................................... GGTGTAGGCGGAAAGGGAATTAACATACCAACAATTC 8962 37 100.0 37 ..................................... AAAATCTCAAGTATTTGCCCATAGATTGATAGCTTAT 8888 37 100.0 35 ..................................... TTAATCAACGACCATTTATATGATGTATATGACGT 8816 37 100.0 36 ..................................... TGACATACCTATGAAGATTATTGGGGTCATCAATTC 8743 37 100.0 36 ..................................... TTAAGAAGTATTCAAGATGGGGTTATTATGAAGTTT 8670 37 100.0 38 ..................................... TCAAAGGATTCATAAAAATCAATAACATCTTTTTCTAA 8595 37 100.0 37 ..................................... TTGTTATTCGGCGCTTCACAGCGTCAACATAATCATT 8521 37 100.0 36 ..................................... ACAATAAAACCACACCAACCGAAAGCGCCAACCCTG 8448 37 100.0 37 ..................................... TGTTCAGCGTTCCAATGGCTGACATCGATAAAGTCCA 8374 37 100.0 38 ..................................... TTCCGTTGTATAAAATCTCTTGCGTTCTGTTTGTTATT 8299 37 100.0 39 ..................................... CAATCCACGTACAGGCTTTGAACACTATGGAGTATCATC 8223 37 100.0 36 ..................................... ATTGATGAACGTATTCTGCACTATTTTGGAAGGTAC 8150 37 100.0 37 ..................................... AGTGAATAGTATATATAAGAATCATTATATAGTCAAT 8076 37 100.0 36 ..................................... ATGAACGATTATCGGCAAGGAGTGACGGCGAGTATT 8003 37 100.0 33 ..................................... GAGTATTTCAATGAATGATTGACGCCTTGGCAA 7933 37 75.7 37 A..GT....A....AC....G....A......A.... GTACAAACTTTTGTAACGGTATTTAGCAGCGTTATCG T [7929] 7858 37 89.2 0 ....T..............A............A...T | ========== ====== ====== ====== ===================================== ======================================= ================== 18 37 98.1 37 GTTACATTGCTAATGACCCGATTTAGGGGATTGAAAC # Left flank : AGTACATCGCAAAAAGCTCCCTTTAAATATATATTGATGAAATGTTCTTAATAGGGTAAAATAATTAGTAAGCTTATTCATTTTATTTCGTTCTGCCAGATTTTCTAATAGAACAAATGGTTTTCGAGGCAGATGTAGGGTTTTTTACAGAAAATGCATCTTCGAAAAAAAGCTTCTTTTTAGGCGAATCGGATATCCCAAACTATTAGATTTTTCAATGGTTTAAGCCTTAATGATATTTGC # Right flank : TAGTCTGTAGTATGCTTTTATAACAAAATGAAAAAGAACTTCTAGACATTTCAAGAGAAATATTTTAAGGGTTATCATCAATATTTCATGGTTAAGTAAGGGCATTCAATATTCAAGAGAAAACCAAAAGGCTAGAAAACATTGTTGGTTTTGTCTCAGCTGAGAATGTTTTTCTGTTAAATCTATCCCTAGAACCAGAATATAGGCTTATCAAACAATAATTACAAAAGAGATTTCTGACCAATATTGGTAAAGGGTTTCTCAACAAAAATCCTTACGTTGGGGGTTATTTATTTGTATTGAACTTTCTTTGTTAATTAATCACCTAATTAAAAATATTATTTATTGTTCAGTATGATGTATAAATATGTAATAAAAGGGTAATAATAGAATTAAGGTGGTGAGTTAAACAATGCATTATTTACAAACGATTGAAATGATTATTAAAACATAATATTATGAAGTACGACTGCTGGGAGTACCGGGAAGAAATTATGGGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACATTGCTAATGACCCGATTTAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.60,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 53104-51030 **** Predicted by CRISPRDetect 2.4 *** >NZ_CCRF01000083.1 Caldibacillus thermoamylovorans strain 1A1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 53103 32 100.0 33 ................................ TTTTACTTGCGCGGCTTCTGTTTTAACCATTTT 53038 32 100.0 34 ................................ AGCTAATTAGTCGCTATAACCGAGAAAACTGTCT 52972 32 100.0 34 ................................ ATCGTTGAACAAGACGGGGGGAGATTACACCACG 52906 32 100.0 33 ................................ TTTTTTGGTTATTTGGTGCATACATGTATTTCA 52841 32 100.0 34 ................................ TTTGCCATCTGTATTCAAAATTAAATTCCTTATT 52775 32 100.0 34 ................................ AAAAATTAAATTTTGTTTCCAGTCACAAATCATA 52709 32 100.0 34 ................................ AGTGCGGTAATTATCCTTTGAAACATTGCATCAC 52643 32 100.0 33 ................................ TTCTTTTTATTCGATGATTGATCCATACTCTCA 52578 32 100.0 34 ................................ CGTCTTGGTAATGAGGATATAAATCATCGCTACC 52512 32 100.0 34 ................................ ACAATTAACTCAGCATGTGATTGTATCAGGTCAT 52446 32 100.0 34 ................................ CAACCATATATAGCACCAACAAAAAACATCAATA 52380 32 100.0 34 ................................ TAAAGCATGTGGATGAATCAGTTTAGCAGGCACA 52314 32 100.0 34 ................................ GATTTTTTTAGGCCAAGCATAAACCATAGCTAAC 52248 32 100.0 34 ................................ TTTCTACATCCGTTTGGGTTGTAGCAATATCATC 52182 32 100.0 36 ................................ AGGTGGGAATCCTGCTTTTAAAAGAGAATTAGTTAA 52114 32 100.0 33 ................................ GATTGGGTCTCCTACCGGCTCATTTGTCATTTC 52049 32 100.0 33 ................................ AAAAATTCATTCGTCTTATTTAAGCGGTGTCGC 51984 32 100.0 34 ................................ ATAACGATGGGACGATTGCGGAGTTAGAGGCGCA 51918 32 100.0 34 ................................ GCATATGTTTTAAAAATAGTGGATATTTGCATAG 51852 32 100.0 33 ................................ CTGCTACACTCCCATTTTGTACCCAACTTTGCC 51787 32 100.0 34 ................................ AATATCTAAATCTTGTGGCATAGTGTTTAATCTA 51721 32 100.0 33 ................................ TTTAATAACCTTGATTTCTTTTGCGTAGTTAAA 51656 32 100.0 34 ................................ TTCGAGATTCCTTAAAAAGTCAACAATATGCTTT 51590 32 100.0 34 ................................ ATGGTAAAAGCTCCTGACCTGGTGAGCAAACGTT 51524 32 100.0 34 ................................ TAGTTGTGCATAGGCAAACTCTATATATGTTCCA 51458 32 100.0 33 ................................ GTTGGCAAGTTGCACTTCCAAGTTTGCTATTTT 51393 32 100.0 33 ................................ CCATCTTTGAACTGAACAGGTAGTCTAACTTTA 51328 32 96.9 34 ....................T........... TAAACTAATATAGAATTGCGTTTCACCGGGATCC 51262 32 96.9 36 ..............A................. TATACGAAACCTTTTGTTTTGCCATGTTCGACCCAA 51194 32 96.9 36 ..............A................. AATAGATGAAGGTATAACCCTTGAACCATATTTAAC 51126 32 100.0 33 ................................ AATTTGACGTAATAAAAAGTTCGAAAATCTATC 51061 32 96.9 0 ...................T............ | ========== ====== ====== ====== ================================ ==================================== ================== 32 32 99.6 34 GTCGCACTCTTCATGGGTGCGTGGATTGAAAT # Left flank : ACGTTCTGATTTAGATGAATATCCGCCATTTTTCTGGAAGTAGGTGAGAGATTGCTCGTATTAATAACATATGATGTTAATACGGTTAGTACTTCAGGACAAAAGAGATTACGGAGAGTTTCAAAAATATGTCAAAATTATGGACAACGTGTACAAAATTCAGTTTTCGAATGTGTAGTTGACGCTACTCAATATACTACATTAAAATTTGAACTTGAGAGTGTTATAGATAAAGAAAAAGATAGTCTTCGATTTTATAAATTGGGAAATAATTATAAAAATAAGGTTGAGCATATCGGAATAAAACCTTCAATTGATATGGAGGGAACATTAATTGTTTAGTGCGAATGTAAAGTACACATAATTTTCCTAAGGGTTTCGCACCAAATTTTTTACCATTTTTTTCCATTTATTTGCTCATTTACTTAAATGTTCTTTAGTTAACTAAAGAAAATAGCGGTTTTTCTGTATATTTTGGGTCAATTTGGCACAAAATCGCT # Right flank : CGTGACGGTCTACCTAAAGACGAAATGGAAATGACTGTCGAACCCTACATAAATTTCACACCAAAGGAACTATAAAATAACACAGGAGATGACAATGATTGTAGCGAAGATAGTAATATAATAAAATATGACTTTTCTGGTGGTGTGGATTGTGAAAAAAATTTTGACATCAAAGAAGGCTGTGTTTGGAGGCTTGTTGTTCTTGCTTATTGGTACATGGGTATTCAGCGAAATGAGCAATCGTTTTTCCATGAAGGGGCAAGAGCCAACTGATGAAGGCTATATTGTTTTTCACAATGGTACGAAATATTTCGTTAAAGGAGAAAATATTACAGCTTCTGACTTGGAAAATTTTTCTGATGAAGATGTTACGATGTTTTCAAAAAAGTTTGAGGAAATAGCGATATTACTAGATGATGGAATGAAACTTTTAGGGACAGGAATTAAAAGTGGTGATCAGGTCGCTATTTGGTATGAAGAAGTCCTTGAATCGTACCCGG # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTCATGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 62420-61717 **** Predicted by CRISPRDetect 2.4 *** >NZ_CCRF01000083.1 Caldibacillus thermoamylovorans strain 1A1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 62419 33 100.0 33 ................................. AGATGTCAAGATAAGGATTTACAACAAGGCTAA 62353 33 100.0 34 ................................. GTATAAATAAATGTTGACAAGGTGTTATATTGAT 62286 33 100.0 33 ................................. CTATTATATTCCCAGTGGCAATTTCACCCTTTT 62220 33 100.0 33 ................................. TGCTAAAGTCTTTAATACTTTTAAAACCGCTAT 62154 33 100.0 34 ................................. TATAATACTTAAAAAAACAAGTCTCGTAATGTGG 62087 33 100.0 35 ................................. TCCTTTTTAATAAATTGATAACGAAAGCATTTTAC 62019 33 100.0 35 ................................. GTTGCGGATAAAGTATTCGGCGGACAGTTTACACG 61951 33 100.0 35 ................................. CTTCGAACATTTCACGTAACGGCTCCGGTCCTGAC 61883 33 100.0 33 ................................. AAACGGAAAGACATATGCGGTATTATTAGATGG 61817 33 100.0 35 ................................. GTAAAACTGTGGGAACCGATTTACGAACGGTTGGC 61749 33 93.9 0 ..........AT..................... | ========== ====== ====== ====== ================================= =================================== ================== 11 33 99.4 34 GTCGCACTCTTCACGGGGTGCGTGGATTGAAAT # Left flank : CAGTCGTCATTTCCGGTCTCGTCCTATACTCAGTGATCATGCTGCCGCTATTTATTCCGGTCGTCGTCAAAATCTTCGGCAAAGCCAACTGGTGGCCGTTTGTGGGTAAGAAAGATTAGTACTTGGAAAAGAGCTTTAGATCAACCTAGAAGGAAAGTATATATAGTCATCTCCTTAAGTTTAAATATAACCAATTAAAACCACCTCAGAAAGGTAATTGAGCTGGTTTTTTAATAAATGGTGAAAAATCAATGCAGATTCGTTAATATATATTTAAGGAGAAAATAAGTTAATTTGGTTATAGTCCTTGGAGGGAAAAGAAAAAATGTAGGTGCGAATAGTAAGTGAACATGATTTCATTAGGGGATTCGCACAAAAAATTACTATTAAATTATCCAGTATTTCCCATTAATGTTAATATTTTTTGTTTTGTTCTTTAGTTACCTAAAGGAAATAGTGTATTTCTGTAATTATTTAATAAAAAAATTACAGAAATCGCT # Right flank : AAATTAAGTAAAAATTGCTAGAGTTCGAATCATATGATTAGTACAAAACTCAAAAAAGTTTTTCGAACAACTTTATGTTAAATATAGCATGAACTCTATTTAATGCTGCACAAAGCTTAATATTTTGGAAAAATGGACTCTTTGGATAGTAACCATATAAATATTTTGAAAAAATAATGAAAACGCTTAAATAAATAGGAAAAAAGTAGTATAATAATAGTGATTATTTTTAAACTAGGGGTTGATAAATTGGACTCTATTGCACATATACGAGAAAGTGATAAAAAGATTCAAACAGTTGAACAACACCTTCTAGAAGCAAAAGAATTTGCCGAAGCTTATGGAGCAAAAATTGGAATTACACATATTACTGGTTTAGCAGGAATGCTTCATGATTTAGGGAAATATTCAGATGAATTTCAAGAATATATTTTGGAAGCGGTAAATAATCCTTTCTCCCCTCCGAAACGTGGGAGTGTTGACCATTCAACAGCAGGAGG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTCACGGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.20,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA // Array 1 44738-43305 **** Predicted by CRISPRDetect 2.4 *** >NZ_CCRF01000096.1 Caldibacillus thermoamylovorans strain 1A1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 44737 30 100.0 35 .............................. TCGTTTTCTTCTTCCGAGATACCTGATTCAGCTAC 44672 30 100.0 38 .............................. ATATTAATAATATTAGGAGATTAGAAAAAAAAAAATAG 44604 30 100.0 36 .............................. AGACTGACTCGCCATTTTCAAACTCCTCCAATAACC 44538 30 100.0 36 .............................. GCGGCAAATGTATCCCAAGCCATCGCAAACGCAAGC 44472 30 100.0 36 .............................. ATTGTTCGCTCGCTGCGCCGTTGTAACCGCTTGGTG 44406 30 100.0 36 .............................. CGTTTATTCTATAAAAGCCCCGGAGCTCCGCCGCGC 44340 30 100.0 37 .............................. AGAAAATGCGGTTGTAGTGCTGTAAATTCTTAATCTT 44273 30 100.0 39 .............................. TGCTTCTAATCGAGCAATTCGCTCAAATTCCTTCTGCTC 44204 30 100.0 36 .............................. CTTAACTATTCTTAATTCATTTTTCTCATCCTTTTT 44138 30 100.0 38 .............................. TTTTCCAAATCTTCTAATCTTTCAATAATAAATCCAAC 44070 30 100.0 38 .............................. TACGCCAGCCCTAAGTACCTTTTCCCGTTCGGGCTGTC 44002 30 100.0 37 .............................. AGAACATCCTGTACAAGATGGCGAGGACAGGTTAGCA 43935 30 100.0 37 .............................. AATAGTCATCTTCCCTTTCAATCGCAACTTTAAAAAC 43868 30 100.0 35 .............................. GACATTGGCGAATATACTCGTCAATTTGATGCTGA 43803 30 100.0 36 .............................. AGGCAAACAAAGCTAATATCGCAGGGACGTTGAGAC 43737 30 100.0 39 .............................. ATTTGCTTATATGGTATTTCAAACATTTGTTTTTCCTCC 43668 30 100.0 35 .............................. GAAAGAGAAATAAAAAAAGCAAAATCAAATAATCC 43603 30 100.0 36 .............................. CGGATTTTTGGAATGTTGACTTTCCACCAGGTGTCA 43537 30 100.0 37 .............................. CTCTCCATAAGCATAACGTTTTAAATGTGCATACAAA 43470 30 100.0 37 .............................. GGTTGTATTTTTTTGCTAGTTCATTCGAATGTATTCC 43403 30 100.0 38 .............................. TTACGAAGAGTCCGCCAAAGACCGTCGTTGACCATTTC 43335 30 80.0 0 ...............T...AT....C.TT. | T [43314] ========== ====== ====== ====== ============================== ======================================= ================== 22 30 99.1 37 GTTTATATCTTACCTATGAGGAATTGAAAC # Left flank : GCATAATTTGAGTTTTATAGGAATTGGCTCTTTTGGTCCTATTGATATTAATAAAAATTCAAAGAAATATGGTTTTATAACAACTACACCTAAAAAGGGGTGGAATAATTTTAATTTTTTAGGTGTAATGAAAGAACGATACAGTGTACCTATCGCATGGACGACTGATGTAAATGCTGCGACATATGGAGAATATAAAAAAGGAAATGGAAAAGTTAGAACGAGTGTTTTGGTATCGGAATCGGGGGTGGGGCAATTATTAATAACAGGATATTAGAAGGATTTGGTCACCCAGAGACAATACATATTTTTGTCGTCGACCTCCAATAGCGTAAAAACCCCGGGGGATCGACGACAAGTTATTTTGTAAAAAAATCAATAGAAAATGCTTAAATTACGTGTATTTATGAAAAATATAATTGCTAGAAAACCAAATTTTTATTATAATTAACACAAGACCACCAATACAAAAAACCTTATTAAATCAAGGATTGTTTGGG # Right flank : TCTGTCATTTTCAAACTACCACCTTGTCAATTTTATTGGTCGTATCATTGTTGATCGTTTTTTCCCATTTTAAACTGAGATGAATCATTAGAATTTGATAGCGTTTATTTGTATCGTTTTATATAAAGCAAGGAGATGTTTTAATATGACAACAATCGCATTTGATCTTGATGATACATTGTATGACAGAACGCAACCTTTAAGACAAGCCCTTTTAGAAATTGATGAAGCGAAATCTCTCCCTTTTCATAAATTTCTTAACGTTTTTCAACAAAATAGTGATATTGCCTTTGAAAAAGTGAAAGATCATATTTGGACACTAGAAGAATCACACATTTTCAGAATTAGAAATACGCTTCATCAATTGGGAATTGATATAAGCTTAAGTAAGGCACAAAATTTCCAAGACCAATATAAAAAAAATCAACAACAAATTGAGCCCTTTCCATGTATCTTAGAAATTTTAGACTTTCTTCAGACAAAAAATATACAAACGATAA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //