Array 1 35-1378 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALYC02000018.1 Pasteurella multocida subsp. multocida VTCCBAA264 contig00018, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 35 28 100.0 32 ............................ TATTAGGGGTTTAACGTTATCGAATGATTAAT 95 28 100.0 32 ............................ AAGATGCTCAGCGCTACCTTTAAACGAAATAT 155 28 100.0 31 ............................ AAAATATAAACGTTTAAGAGGTCTCTCTTAA 214 28 100.0 32 ............................ TTAGGCAACATAAAGATAACTTAATGGTCTAA 274 28 100.0 32 ............................ CATGGGGATTGACGATAGGTGGAACTTTGAGG 334 28 100.0 32 ............................ GAAAGCCATACGTTTAATCAATGACTCAATCA 394 28 100.0 32 ............................ ACAATTTACAACAACACAGTTAACAACAACCA 454 28 100.0 32 ............................ GACAACAAGAGATTGCGTTGTTTAAGAGCTTT 514 28 100.0 32 ............................ AGTTAACATAAAGATAACTTAAAGAGGCCTAA 574 28 100.0 31 ............................ ACTTAGACGTTTTACCCCAGTGTATAAACAT 633 28 100.0 33 ............................ TCTTAGGTTGTTGTAAATTGTGGTTGTTAAGTG 694 28 100.0 31 ............................ TAATGACCACTAAAAGGTAATTACCCATCAT 753 28 100.0 32 ............................ TTTCCACCGACTTCTAAAAGTAAGCGAACTGT 813 28 100.0 32 ............................ AGACGTGTATTAAACAGATAAAGACTAAGAAA 873 28 100.0 29 ............................ ATTAATAGGAAATAAACATGAAGCAGCAC 930 28 100.0 32 ............................ TAGCTACTTTCTATTAGTTGTCTTATAGCCAC 990 28 100.0 32 ............................ ATAATGACCACTAAAAGACAACTATTTATCGA 1050 28 100.0 32 ............................ TTTCCCGCTAATAGGTTTACCGTAAACTAAAT 1110 28 100.0 32 ............................ TTTTATTTTACTACCTTGCACCAAGGTGTCAG 1170 28 100.0 33 ............................ AGTGTAGTGGCCACAACATCTAAACGGCTCATG 1231 28 100.0 32 ............................ ACTACAGGGCACCTGTTAAAAGCTGGAAACAG 1291 28 100.0 32 ............................ TGTTTGGTGGTTAATCATATTGTTTTGGTGTT 1351 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 23 28 99.8 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : AAATTTCGACGTCTTACCCCCGGTATATAGACACG # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGAGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGTTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 91659-93006 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALYC02000001.1 Pasteurella multocida subsp. multocida VTCCBAA264 contig00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 91659 28 100.0 32 ............................ TGAGGTCTACCGTGCGGTTAATATCGCACAGA 91719 28 100.0 32 ............................ GCAAGGTGATGATATTATGAAAGGTTTATTAA 91779 28 100.0 32 ............................ CGTATTTGCTGAGATTAAATACGGTGAAATTC 91839 28 100.0 32 ............................ TCAGCAGCCTGCTTATAAAAAGCCTGCTCCAG 91899 28 100.0 32 ............................ AGTTAGGTTTGCTTAGGTTTGCTTAGGTTTGC 91959 28 100.0 32 ............................ TATTGGTGAGACAGGTTTTAAATGGTTGAAGG 92019 28 100.0 32 ............................ TACAACCTGGTCAGTCATTAGACGATAAACGT 92079 28 100.0 32 ............................ TTCTTGTTGTTCAATACTTGTATAAATTTCGA 92139 28 100.0 32 ............................ TCTACACTGATAGATTCTAATAAATTGTTGAT 92199 28 100.0 32 ............................ AAGTTGCGTTGGAATTAGAGAGCGCAGCCATG 92259 28 100.0 32 ............................ ATGGAGCGTTATAGAGATGTGGAAATGCCGGG 92319 28 100.0 32 ............................ AGCTGGAGACCGCACCTTTTACACAACACCTG 92379 28 100.0 32 ............................ AGACGCGATTGTTCGAACAATATGTCGAGAAG 92439 28 100.0 32 ............................ ACGCAGAAGAAGCGGCTACCTTAATCTCTAAA 92499 28 100.0 32 ............................ AACAGAAAGACAACAACGTAGGAGAACATCAA 92559 28 100.0 32 ............................ AGGGACAACCTACCATATCACGCTGGGTCCCC 92619 28 100.0 32 ............................ AAAAGTGGAAGAAAGCAAAATCACAGCGACAC 92679 28 100.0 32 ............................ AAAAGTGGAAGAAAGCAAAATCACAGCGACAC 92739 28 100.0 32 ............................ TAGCTGTTTTGGTTGAGTTTTTTATCGGCTAC 92799 28 100.0 32 ............................ ATAGGGACGCTTGCGGTTTATGGATTTTTTAT 92859 28 100.0 32 ............................ AAGTTGTTATATTAAGCATGAAGAAATGAAAC 92919 28 96.4 32 ............G............... AGTCTGTTATTGATTTTCTCAAGCGTTATTTC C [92927] 92980 27 85.7 0 ....................-..TC..T | ========== ====== ====== ====== ============================ ================================ ================== 23 28 99.2 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : ATACAGCGCAGATACCTATTTACACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTCCGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACTTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGCTCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGGTTTAG # Right flank : TTGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCGTCAATCTTATCCATACTCTCAGCAACGAGATAATACTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGAGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAGGGCATCGTTTG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 15998-16324 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALYC02000036.1 Pasteurella multocida subsp. multocida VTCCBAA264 contig00036, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 15998 28 100.0 32 ............................ CCATCAAACTATTGAAACTTTGAGTTTTCAAA 16058 28 100.0 32 ............................ AAGCACATCTTCCCACAATCTGGTGGTAACGT 16118 28 100.0 32 ............................ ATGTTCATCGAAAGGTAGTGACATGAAGTGGT 16178 28 100.0 31 ............................ ACATTAAACCTCTAATAGGAAAATAAAACAT 16237 28 100.0 32 ............................ TCTGGATATCAACATCAATGAGGCATCATTAA 16297 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 6 28 100.0 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : AATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACTCCGTTGCCTACCGAGTACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGTCGCAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTTCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTAG # Right flank : ATTTCGACGTCTTACCCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 5455-6083 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALYC02000046.1 Pasteurella multocida subsp. multocida VTCCBAA264 contig00046, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 5455 36 80.6 30 ...A.TT..GTGG....................... ATACATGCTAATCAATTTGATAAGGCTGGA 5521 36 100.0 30 .................................... GGTAGATAAAAGTTAAATTCATTGAGTTTA 5587 36 100.0 30 .................................... TTTGCTTTCTTCGCAAATAACGCTTTGACT 5653 36 100.0 30 .................................... ACCAAGAGTTAACTTATAGATGACCAAGAG 5719 36 100.0 30 .................................... TCAAGTTGCCAATTACAGGGACCAAAACGG 5785 36 100.0 30 .................................... AATGGCTGTAGTACTTTATACCACCTCAGC 5851 36 100.0 30 .................................... AGGAAGGTAGGCACTTCGATGACCTCAGAG 5917 36 100.0 29 .................................... CAAGATATTGGCGTACGCGAGATTCGGCA 5982 36 100.0 30 .................................... CATTTCGTGAATAAATCTTTAGGTGCAATT 6048 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 98.1 30 GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Left flank : GATGACCTTAAAAGGTTTACCCCTTGCCTATAATAAAGATATGCAAGAAGACAAAGAAGGGATTTTTGATGCCCTAGATACTTGGCAAGACTGTATCGACATGGCGGCTCTTGTGTTAGACGGCATTCAAGTCAATGTGGAACGTACCAAAGAAGCCGCTTTAAAAGGTTATTCCAATGCCACTGAACTGGCCGACTATTTGGTCGCCAAAGGCGTGCCATTCCGTGACTCTCACCATATTGTGGGCGAAACCGTTGTTTATGCTATCCAACAGCACAAAGCGCTTGAAGCACTCAGCGTTGCTGAATTTAAACAATTTAGTGATGTTGTCGAAGAAGATGTGTATCAGATCCTATCTCTGCAATCTTGTTTAGATAAACGCTGTGCCAAAGGTGGCGTATCACCACTTCGTGTTGCAGAAGCCATCGCTGAAGCGAAAGCAAGGTTGAGTTAATTCTCAAATGAAACGATTTTAATCAGCCACAAAGCGCAATAATACT # Right flank : TCTCGTGTCCCTTATCCCTTATGGCACAAGGGATAAGGGCATTTTTAATGCTCAAAAATTACTTGAATTCTCGATATTAAGCATTCTATTTTTAGAAAATTTTTCTTAAAAAGTCATTGATTTTGTCTGACTGGGATAACATCTGTTGTATGTTACTCCTGGTTCTGAGATGCGCTAGGCTAAAATAGAGAATAGTCTTTTTGTCTATTTTTATAGAATAGGTAAATAGTTTACTTAGAACAGCAACATTTGATTTGCGTTTACTTTTTTCTCTTGAAGTCTCAATCTCCCCAAGAGTATTTTCATTCCTGCAAATTGCTTTTCTGTCACTTCTAAACAGCGTATTGAACCTTCTTCTGGGAGATGATCACTGAGTCGTTTATTATGCTTTTGCATGGAGTCTCGACCTCGAATAATTCTAGCATATACAGAAAGTTGTAACATTTGATAACCATCTTTTAATAAAAATTGACGGAATTGATTTGCTGCTTTACGTTTTG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //