Array 1 99895-104220 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHBFS010000007.1 Leuconostoc gelidum subsp. gelidum strain JPBL22 NODE_5_length_559241_cov_98.135651, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 99895 36 100.0 30 .................................... AAAAGACCGGTAAAGCAAATACACTATATT 99961 36 100.0 30 .................................... GATTGACTAAATTAATTGAAGCTTTTCTAC 100027 36 100.0 30 .................................... TCACCCTCTAAGTTAGGGGCTTGGAAAATT 100093 36 100.0 30 .................................... AACTAATTCTTTTTACAGTGTTTATGATAA 100159 36 100.0 30 .................................... TGTTATCTCCTTTTCTGACATGACAATTGT 100225 36 100.0 30 .................................... GCAACATCTTCTCCTTGACCAAATGATGGA 100291 36 100.0 30 .................................... TTTGAAAAGGAATGGAGCAAGTGATGACTG 100357 36 100.0 30 .................................... AATACACAATACGCAAGGGCGGTTATTAAG 100423 36 100.0 30 .................................... TTAAGGATATTGGTTTAGTTTAAATGTTAA 100489 36 100.0 30 .................................... ACCACAATACCCCAGTTACGACCACGTTTA 100555 36 100.0 30 .................................... CCAAGAAGGCCGTTCAATTAAATCATTAGT 100621 36 100.0 30 .................................... CATAAGGATATAAAGAATTAACATCAAGAG 100687 36 100.0 30 .................................... TCATAATCTTGATTATGATGTGTCTTACAT 100753 36 100.0 30 .................................... GACTAAAAATACTAAAGTAAAAATACGAGG 100819 36 100.0 30 .................................... AATATATCCATTTTTTACGTTCAAAGCGGA 100885 36 100.0 30 .................................... TCCGCTGAGTATTTACTACCTTTAGTTTCC 100951 36 100.0 30 .................................... TACTCTCTGTATTTTGGTACAATAAAAGCA 101017 36 100.0 31 .................................... TGACACAACTTGCAAACCGTCATCACGTTTC 101084 36 100.0 30 .................................... CAAAACCCATTTTGCCATCCAATTTGTATA 101150 36 100.0 30 .................................... CCCAAAAGAAAAACAAACGGAGTTATTGGC 101216 36 100.0 30 .................................... ACGTTTCTCGGTACTCGTTACGTTTATTTT 101282 36 100.0 30 .................................... CTCTCTATTACGATATATGATTCACCTTTA 101348 36 100.0 30 .................................... ATGAACATGTGACATTCAGAATAGAAGAGG 101414 36 100.0 30 .................................... TATAGGCTTCAATACGTTGGTAGGCACGGT 101480 36 100.0 30 .................................... AACAAATAAACATTGCAGGGTTAGGCATGC 101546 36 100.0 30 .................................... TAAGATTGTCAACACTACCGCCAACACATA 101612 36 100.0 30 .................................... CATATTTTATCGTGTCAGAATACATCCCCT 101678 36 100.0 30 .................................... TTATATACAAGGCTATACGACATAGATGAT 101744 36 100.0 30 .................................... CTTGAACTGAATCCCAACCATACTTCTTGA 101810 36 100.0 30 .................................... TAAAGTAGAAATGCATGATGTGTTTATTGA 101876 36 100.0 30 .................................... GAGCTTTTCATGACATCGCCAGACAATACG 101942 36 100.0 30 .................................... GGTAGATGCAGGTGTTTATCAATCCGTGGG 102008 36 100.0 30 .................................... CACCAAACGTTGGTATCAGTCAAAATTGTT 102074 36 100.0 30 .................................... ACTTAGTCCTTTTATCGTTTTCGTCCACCT 102140 36 100.0 30 .................................... TAATCTTTCTTGCGCTAATTCATATACGTT 102206 36 100.0 30 .................................... ACGAGAGGAACAGCTAATAGCAGTAATGGG 102272 36 100.0 30 .................................... GAGAAATATAAGGTCAATGATTACGACTAT 102338 36 100.0 30 .................................... AGCTCCGAATAATATATTTAACTCTTGCGA 102404 36 100.0 30 .................................... ATCTTGCAGGAACAAGTGGTGCTTGGGTTA 102470 36 100.0 30 .................................... AAAAAAATCATGTAGTTTATCTCTAATTGT 102536 36 100.0 30 .................................... TTTCGCTGATAGCTTGTTAATGAACACACT 102602 36 100.0 30 .................................... GGTATGGTCGGCTACTTGGAATGTCGTTAA 102668 36 100.0 30 .................................... GACGATGCACAAGATTGGATAGATGAGTTG 102734 36 100.0 30 .................................... ACCCAACTATCTTAAGTAGTCAGGTCATAA 102800 36 100.0 30 .................................... ATTAAGTCCATTATTTCAATAGCTCCTTTC 102866 36 100.0 30 .................................... CTTGTTATAGCCCGCGCCTGCTTCATAATC 102932 36 100.0 30 .................................... TGTTTGGTCTTGCAAGTCGCGCAATAATCC 102998 36 100.0 30 .................................... ATATAAATGCGGCGCGCACAAGAAGAGTAA 103064 36 100.0 30 .................................... ACTAGACGATGACTTTGTTCCAGCTGAATT 103130 36 100.0 30 .................................... GTTAGGATACATTTTAACCAAGTATCCTGT 103196 36 100.0 30 .................................... GCGATTTGAAAGATGTTGCCGTCAATCCGT 103262 36 100.0 30 .................................... CAGATAGGCGGCATTGCTAAACTATTTGTA 103328 36 100.0 30 .................................... ATTGAGGAGAAAAATAATGAACAAGAAATT 103394 36 100.0 30 .................................... GATAAGGTAGCTGCTAAGCAAGCAGAAGTC 103460 36 100.0 30 .................................... ACCGTCCATGTACGCCTTACTGTTAACAAA 103526 36 100.0 30 .................................... AATAATACTGAACACTATCGCCTGACTTAA 103592 36 100.0 30 .................................... GACCAATTGGTTTAACCGGTGCTACAGGAC 103658 36 100.0 30 .................................... GCGTTGTCTGAATGCCCTTGTCAACCCATT 103724 36 100.0 30 .................................... GGTCGATAAAACGATCGAAGAAGCGCTTGA 103790 36 100.0 30 .................................... AATAATTTTTTTAGTAATCCTGTCTGCTTG 103856 36 100.0 30 .................................... TGTTCCGCGTTGGAATTACATTGGCGACGC 103922 36 100.0 30 .................................... GTTCATCTTGTTTAATACGTACTATTATTT 103988 36 100.0 30 .................................... ATCAGACTCAGGTAACAGATTATATACAGG 104054 36 100.0 30 .................................... TACACAATTTAATGCAAAGCCATTGCTCAG 104120 36 94.4 30 ...........................A.......T GTATCGGGAACAGGATATCAGATCTTGAAG 104186 35 77.8 0 .............AC..T..T...-.A.A.....G. | ========== ====== ====== ====== ==================================== =============================== ================== 66 36 99.6 30 GCTTCAGATGTGTGTCAGATCAATGAGGTTTAAACC # Left flank : GGTGCGCAACTTGATGTGAATAAGTTGTATCAAAAAAATATCGTTAATACAATGAAAAATTATGCAGATGATCAAGCGTTAGAAGTGTTTTATAAAATAAATTCTGAATTAAATCATGTCTTAGAAAACATTATATTAGAGAATAATTTGCCCTTTTATTTTCAAACAGAATTCAATATTGTCGAATTAATAAATGAGAAAAAAATTAAGATAGAAACACTGACAAACAGCTCTGGATTTGGTAAAATAGAAGATGTAGTAAGCGTTGCTGGTGAGTTTTCAGAGCAACGTTTAATCGTTTTTACGAATTTGTATTTGTTGTTATCGGTTGATCAGATTGACTATCTGAATAATCTAGCGAAGACAATGAATTTATGTTTAATTTCTCTTAATTTGACACAAAACCCTGTTATGACTAAACAGGGTCTACCTCCAGAAATCTTTATTGATGAGGATTTCGTTCAATTTGGTGCTGACTAGCTGATGCGAACAGGCGGTCT # Right flank : CGCTTAGGCGCTTTTTATATGCCATGTATGTCAAAAAAAGGTTTACGCGAATAACGATTATGGTATGATATATTATGTTATAAATAATCACGTCAAACGTGAGATGGAGAAAGGGAGATTTTCCTGTTTTGGTAAATAAAAAATTGCGAGTGAAAGAACTACTAGTTTCAACAATAATTATTGGTGGCGTTATGGGCACCATGTCTACGGTTAATGCTGCTGAAAATACAGCGCATGTATCGACACAAGTGCCAAGTACAATAACATCAGGTTCGAGTGGTACATCACAAGCGCCAAGCACTAAGACATCAAGTTCAACCATAAATGAGTCGAGACAAAATGATAATTATAATGTGACGCCGTCAACAAGGTCTATTCAAGTACATCAAGCGAAATTTAAAACCGGTTCTGTAATTGTATTGACCACTTCAGCAAAAACATCCAGTGGTACACAACTTCAAAAGTATGGTAATCAATCAGGTGTTGTGACGAATGTCATA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAGATGTGTGTCAGATCAATGAGGTTTAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.40,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //