Array 1 8431-7305 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCIN01000009.1 Salmonella enterica subsp. enterica serovar Heidelberg strain SE111 HEIDELBERG_S7_trimmed_contig_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8430 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 8369 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 8308 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 8247 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 8186 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 8125 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 8064 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 8003 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 7942 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 7881 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 7820 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 7759 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 7698 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 7637 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 7576 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 7515 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 7454 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 7393 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 7332 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 29502-27899 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCIN01000128.1 Salmonella enterica subsp. enterica serovar Heidelberg strain SE111 HEIDELBERG_S7_trimmed_contig_141, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 29501 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 29440 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 29379 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 29312 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 29251 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 29190 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 29129 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 29068 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 29007 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 28946 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 28885 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 28824 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 28763 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 28702 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 28641 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 28580 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 28519 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 28458 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 28355 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 28294 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 28233 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 28172 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 28111 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 28050 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 27989 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 27928 29 96.6 0 A............................ | A [27901] ========== ====== ====== ====== ============================= ========================================================================== ================== 26 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCCAGCGGGGATAAACCGGGGAAAAATCAATAAAATCAATGATAAGCAG # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //