Array 1 2366936-2364072 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072380.1 Atopobium sp. oral taxon 416 strain W9116 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2366935 36 100.0 29 .................................... ATAACCTGTAACATTTGCAAAATATTCGT 2366870 36 100.0 30 .................................... TAGCCTGAAGGCCAAGGGGCTCCTGTCTGA 2366804 36 100.0 30 .................................... ACCAGATTGCCGATGGAGTAATCGACTTGT 2366738 36 100.0 29 .................................... ATAACCTGTAACATTTGCAAAATATTCGT 2366673 36 100.0 29 .................................... ATAACCTGTAACATTTGCAAAATATTCGT 2366608 36 100.0 29 .................................... AAATGGATTCCCATTTTTGTCAACGACTT 2366543 36 100.0 30 .................................... ACCATGTTATAGCCCTCGTTCTCAAGTTTT 2366477 36 100.0 30 .................................... CATCTCCCCATATTGCATTTCCTTTCACAG 2366411 36 100.0 30 .................................... TCTTTACCATCAGGGACGCCGACTGCAAGT 2366345 36 100.0 30 .................................... TAATCCTTTGATGCCACATTGCCATTTTCA 2366279 36 100.0 30 .................................... GCATAAGAGACCTCGTCCTCAAGCGGGTTA 2366213 36 100.0 30 .................................... TTTTATGCTTGCATCTCGCGGGTTTGTTTA 2366147 36 100.0 30 .................................... ACACTAGCAGGTGGACCAATTCCGCTCATT 2366081 36 100.0 30 .................................... CGAATTAGAGCAGTATGATTCGACATGGTT 2366015 36 100.0 30 .................................... TGGTAGTTGCGGCAGAAACAAAAAATATAG 2365949 36 100.0 30 .................................... TCATAGCGTTAAGTCGTGCTTGTTTAAGTC 2365883 36 100.0 30 .................................... CTAACAATTGGTGCCAAAGAGGTAAATTCT 2365817 36 100.0 29 .................................... TTAGACAGTACTTAGATCTAGTCTATACA 2365752 36 100.0 29 .................................... TCACGCTTAAGCTGCCAGGCGTAAGTGCT 2365687 36 100.0 30 .................................... CGCCCAGCACTTCCTAGACTATTATCAGGC 2365621 36 100.0 30 .................................... AGCTACAAGGCTAGTAACGACCAGGCCGTG 2365555 36 100.0 30 .................................... AGGGCGAAACGCTAGCTGCAGATGGTGGAA 2365489 36 100.0 30 .................................... TTATTTGTCTGATCGAGAGCGGACTTAGTG 2365423 36 100.0 30 .................................... CTGTAGTGAAAGATATTTAGAGGAAAGAGA 2365357 36 100.0 30 .................................... ATGACAGCACGGCCTATACACATGGTGCTT 2365291 36 100.0 30 .................................... ACCGACTCAAGCATCTGTTGCGTCGCGGTA 2365225 36 100.0 30 .................................... AGGAACTTATAGAGGCAGGTAACCTTAATA 2365159 36 100.0 30 .................................... TCTGCGCGCGTCATCAAATGTCTCACCATT 2365093 36 100.0 29 .................................... ACAATATTTTTGGACTTCTTCGAGTTTTG 2365028 36 100.0 30 .................................... TCTGCGCGCGTCATCAAATGTCTCACCATT 2364962 36 100.0 29 .................................... ACAATATTTTTGGACTTCTTCGAGTTTTG 2364897 36 100.0 30 .................................... TATTTTCTCTGTGGTAAATCTACGATATCC 2364831 36 100.0 30 .................................... ATACGACAAAACTCTGTGGTATGCATTTAC 2364765 36 100.0 29 .................................... TCGTTCGTCTGCTTGAGTGCGGACTTAGT 2364700 36 100.0 30 .................................... CGTTATTTGCCGCCACAGGCGGAGTCGGTT 2364634 36 100.0 30 .................................... AAAAGATTCTGAGGTCAAGCAGTCAGAACA 2364568 36 100.0 30 .................................... TCTCACTTGATGGTTTCCAAAAGTTGAGCG 2364502 36 100.0 30 .................................... AATGCGATGAGCTGGTGCCAGTATCGCGTG 2364436 36 100.0 29 .................................... ACGCTAACAGGTGGACCAATCCCGCTCAT 2364371 36 100.0 30 .................................... CTAACATCCATTTTTTTCCTTAATCTATGA 2364305 36 100.0 30 .................................... TAACAAGCTTGCATCGTGGCCAGCGCTACG 2364239 36 100.0 30 .................................... GATGTCCCGCCCAAATTTAGCGAATTGTTC 2364173 36 100.0 30 .................................... ACAACAACGGCTCTACGGATGGCAAGTACT 2364107 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 44 36 100.0 30 GTGTCATTACCAGTCAGAACGTCACTGCACCAAAAC # Left flank : TACGTGCCGGCAAGGTCGTCTTAAGGGGAAGCGCCCTCTTCGGAAAGCAGGAGGCTACCCAGAAGGGCGGAAGCCGCCAGAGGTACAAGGACCTCATAGCCCAAAACGAGCTGCTGGCTGCCTGCGACATCGCGGGTGAGATGCTCTCCAGGGCCTACGGCTTACAGGCAGCAGAAGCGCATGCGCGATGCGACGGAGCAGATAGTGGAGGTCTGCCGGGGAACGAAAGACAGGCACTTCGCTAAGGTTCGCCAGGCTCGTGGAGTCGCACATGGACGGCATCGTGGCGCACGCCAGGCACCGGATCACCTCAGGCAAGAAGGCACGAACCAGATGATCAAGACGCTCAGGAGGGCAGGCTAGGGATACCCTAACGACGAGTACTTCTTCCTCAAGATATTCGATACCAGCAGGCGCTACTCGGAGCCTTCCGGAGCTGTGTCGTGATGGGGGTGCCCACAGGAATTAGGACTGAACCAGTTTTTTTGACGCACCGCATA # Right flank : CGTTGGTGCAAATTCCCTCCTGCAAAGGGACGCCATTCTGACTGGTTTCATTCTTAATATCCTCAACAAAGTCCTCGTCAATGGCTATATTTCCACCAAATCCCTTTGGTGGAATATAACTAGCTCCTTCAAGTAGCAGCACATTCAAATTAAGAAAAATTATGGTGTCAAGGAACGTTTTGAGCTCGGATTTTGTCAAAAAAAGTCCGAGATTCATGAAAATAATAACCCCTTTAAACCCCATATCAGCGATATATTCCGTAAAGCGGATACAGCTATCAATGTAAGGTTCGCCGGGGTCTTGTTCAGGCTCCAGACCAAAGAGTTTTATAAATTTTGTGAGGTCCCAATCTTTGGTAAATGAATACTCGCTATTAAAACTGAAAGCTATTCTCTCAATAGCTTTCATGATCTCCTGGCTTTGAGAATCAATTGTTTGCCTTGTCTCTTCGTCTTCCTGTAGACATGCGATAAATCGTTCAGCCAGATGCTGAGCCAGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTCATTACCAGTCAGAACGTCACTGCACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: R [matched GTTGGATTACCAGTCAGAACGACACTGCTCCAAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.90,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //