Array 1 8154-5407 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXOU01000003.1 Listeria monocytogenes strain P17 NODE_3_length_518569_cov_143.956936, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 8153 36 100.0 30 .................................... ATCTTCAAAGATTTCATCAACAACTGTTTG 8087 36 100.0 30 .................................... GATTAAAGTGCTATGTAACTTAGATTTGAT 8021 36 100.0 30 .................................... GCAATAGACCAGTTAGGTGTCACAGGTGCG 7955 36 100.0 30 .................................... GATAGTAGTATAATAACTGTGCTAATATGG 7889 36 100.0 30 .................................... TTCGTACCATAGTATACACATGCAGGGGCG 7823 36 100.0 30 .................................... CATATAGATGTTTCCTTTCTACTCGTATAT 7757 36 100.0 30 .................................... AAATATTATTCAATGCTGTAACTGTAAAAG 7691 36 100.0 30 .................................... TACTTTTATTGTCTGCTAAGAATACTACTA 7625 36 100.0 30 .................................... ATTGTACAAATTCCAAGTAACTCATCATTA 7559 36 100.0 30 .................................... TAACTTTAGATACTGCTAAAGAATTAGCAA 7493 36 100.0 30 .................................... TGTCTGAATGTAGTTAATATCTTCAACTTG 7427 36 100.0 30 .................................... CTTCAGTTTCACCTGTGAATACGCCGTTTA 7361 36 100.0 30 .................................... GCGCTTCAGTTTCAGCATTGGTCTTCTTAG 7295 36 100.0 31 .................................... TCTCTTGCATTTGGTTCTGAATAATCTCGTA 7228 36 100.0 30 .................................... AGAGCAATGTAGTCATTCAGCCAATGCCCT 7162 36 100.0 30 .................................... ATATGGGGGCTTATTGTATGGCTAATATAC 7096 36 100.0 30 .................................... ACGGGGCATTTAATGTTGGCAAGCGCAATT 7030 36 100.0 30 .................................... TCCTCAGATAAGGTTTAGTACGCAAGACTC 6964 36 100.0 30 .................................... TCCACTTCGACGCTGGACGGGCTCTCCTCA 6898 36 100.0 30 .................................... CAATGCTTGGGGCTATGATGGCATGGATAA 6832 36 100.0 30 .................................... CTCTTTTCGATATTCCGGAAGAGGTACTCC 6766 36 100.0 30 .................................... CTTTTGTGTCTTCGGTAGCTTTGTCCATTA 6700 36 100.0 30 .................................... CCAGAGTCGCTTTTTCTTCCGGCCAGTCTG 6634 36 100.0 30 .................................... GTGTGTTATCTATTTGTAGCGTGGGTGTAT 6568 36 100.0 30 .................................... ATATACAATGTCTAAGCTTAATCTTTCGGT 6502 36 100.0 30 .................................... GAAATAATATTGATAATATCGCTCTTGCTA 6436 36 100.0 30 .................................... AGTATTTATTATCTCTATTACTTTTGTATA 6370 36 100.0 30 .................................... CGTATTCAAAAGTATATCCGCTAGCCTCAA 6304 36 100.0 30 .................................... TAGGTTTAGGGAGTAAATTAGCTCCTTTGG 6238 36 100.0 30 .................................... GGTAAAACAAGCATCGGCGAAGCAGTAACA 6172 36 100.0 30 .................................... TCCTAAATCTGAAAACAAAAACTACGAGTT 6106 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 6040 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 5974 36 100.0 30 .................................... AAAGCAATAAATCAGATCATAAAGGAGCCT 5908 36 100.0 30 .................................... CGACGGAAAAATTAGACGACGCTAATGTGC 5842 36 100.0 30 .................................... GGGCAACGATATTTGTAGATAACAGGGAGT 5776 36 100.0 30 .................................... TACGATGTTAAGCGGTGGAGTAGATCAGTA 5710 36 100.0 31 .................................... TATAGTCTGTTTTTTCGTAAGTGAGCAGCGC 5643 36 100.0 30 .................................... TTGGGCAAAATGACCGTAATAAATCCATTC 5577 36 100.0 30 .................................... TTAGCACTTATATAGAAGCCCCGCCCCTAC 5511 36 100.0 30 .................................... AGTGATGGGGAAGAGATTGAACTTATGTTT 5445 36 86.1 0 .............A.....C.....A.A.......G | C,A,T [5410,5413,5418] ========== ====== ====== ====== ==================================== =============================== ================== 42 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACAGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 695609-694280 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXOU01000001.1 Listeria monocytogenes strain P17 NODE_1_length_881668_cov_109.076013, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 695608 29 100.0 37 ............................. CAATGCTTAAACCGAGAGCATCAAATTGTTCCCATGC 695542 29 100.0 36 ............................. ATTACAGTACAAGCAAGGGTTATTGAGTTAAATATT 695477 29 100.0 35 ............................. ATTAATGATAAGAGCGGAAAGAAAACTTTCAAGGG 695413 29 100.0 37 ............................. TCCCCCTTAAGATACAAACTCGATTTGACAGGTGCAG 695347 29 100.0 36 ............................. TCGTTTATGACCTTATGAAAGAGTTAACACCTCGAC ATC [695338] 695279 29 100.0 36 ............................. CTTCCTACTTTTTGACATAAAAAATAAGCCGAGTTG 695214 29 100.0 36 ............................. AAGTTCAAAACCTCCCACACCCGCTATGAATAAATT 695149 29 100.0 37 ............................. TTCGTAATTTTACGATTATACTTTTTAGTCAAATTAC 695083 29 100.0 35 ............................. GTAACAAGTAGTGTTATACCTGCAACAATACCAGT 695019 29 100.0 36 ............................. TGGAAATGGGAAGAAAGAAATGCACTGATTGTAGAG 694954 29 100.0 36 ............................. GTCCACATCGACAATAAAAAACACATTGTATCACTT 694889 29 100.0 36 ............................. CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT 694824 29 100.0 34 ............................. TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG 694761 29 100.0 34 ............................. AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC 694698 29 100.0 37 ............................. ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC 694632 29 100.0 34 ............................. AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA 694569 29 100.0 36 ............................. TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA 694504 29 100.0 37 ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 694438 29 100.0 36 ............................. GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 694373 29 100.0 35 ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT 694309 29 93.1 0 .......................C....C | A [694284] ========== ====== ====== ====== ============================= ===================================== ================== 21 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : GTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACTCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCCATTCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCTTTCTCCACACCAAACGTCTTGGCTGCAAGGTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //