Array 1 62954-61248 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWAH01000001.1 Moraxella catarrhalis strain CCUG 353 contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================================================= ================== 62953 28 100.0 89 ............................ TTATTGGTAGGGTAAGCGAATGTACCAAGCGTCTTCACGACCGCACAGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 62836 28 64.3 32 NNNNNNNNNN.................. TACTTTAAATAATTGATTGTTCATAGTTTTAA 62776 28 100.0 32 ............................ ATATTAGATGAAAAGCGATTGGCGGAGTTGGT 62716 28 100.0 32 ............................ AGTTCCTTGCCGACCAACCCCATAAAATGGGT 62656 28 100.0 32 ............................ ATATCCAGCGCCATTACCAGCCACCCACTGCA 62596 28 100.0 32 ............................ ATGATTGAAAATGGGGCTTTATTTTAGGAGAT 62536 28 100.0 32 ............................ AGTATAAGTATTCTATGCTGTACCCAGTGCCA 62476 28 100.0 32 ............................ TAGCAAATCAGCTTAATCTTTTTATTAAAGAC 62416 28 100.0 32 ............................ TGCACGCAAAGAATTTCATGAAGATGCTTTGC 62356 28 100.0 32 ............................ AGAGCGTTTTGATAAGTCTTTTGATGAAATTC 62296 28 100.0 32 ............................ TTCGTAGGTGTAACTATCACAAAGGTGAACTT 62236 28 100.0 32 ............................ TCATATTCAGCATTATAATTGACATGGCTGTT 62176 28 100.0 32 ............................ CTTGATAATTTCTAATTGCGCGGCGCGTATAT 62116 28 100.0 33 ............................ CATGTTCTCAGTGATAACACGCCCAACCACAAT 62055 28 100.0 32 ............................ AATATCAATATCATGTACAGTTTTCATTAAAT 61995 28 100.0 32 ............................ TAGGCAATGAGCCTGAAGTCAAAACATTCACC 61935 28 100.0 32 ............................ CACACACGCACATCATTTCAATAGATTTTATT 61875 28 100.0 32 ............................ AATCATACTTGAGCAATACGAAAACAAGAAAA 61815 28 100.0 32 ............................ TAATAGAACCATCGGTGAGCGGATTAATCAAC 61755 28 100.0 32 ............................ ACTTGATTTAGTAGCTAAGCTTGATGTGTCAA 61695 28 100.0 32 ............................ GCCTTGGTGTTGTCAGTTTTTGAGCAGAACGA 61635 28 100.0 32 ............................ AAAAAACCGTTGTGGATAAAATCGCTCCTCTA 61575 28 100.0 32 ............................ TGATGAGTTTGAGTTATACGCCATAAAGCCTG 61515 28 100.0 32 ............................ TTACACGCTACTGACCTACATTTGGGTAGGAC 61455 28 100.0 32 ............................ AGTTTCAAAATATCAACTTCCCCTAGTAGCTT 61395 28 100.0 32 ............................ ATAATTAACAGTTGCACAACCAATCTTAAAGA 61335 28 100.0 32 ............................ ATTGACTGAATTTACCGCAGTTTCAATCGTTG 61275 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ========================================================================================= ================== 28 28 98.7 34 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : ACCGCACAGGTCGCTTAGAAAATGGTGATAACCTCACTTTTTTCAATGAGTTCCTTCACGACCGCACAGGTCGCTTAGAAATTGATGTACTAAAGTCGTGTTAATAACATAATCTTCACGACCGCACAGGTCGCTTAGAAATTACCTGATGATACCATTTCCAATTTAACTTCCTTCACGACCGCACAGGTCGCTTAGAAACTGCCACCTCACACAGTGGCAGAGTTTACCCACTTCACGACCGCACAGGTCGCTTAGAAATTTAACTCAAGATACGGCAAACAATTAATACCCTTCACGACCGCACAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGGTCGCTTAGAAAAGCTTTTTAAAATACTGCTTGATGGATTCATC # Right flank : TTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGTAATTTATGACCGAACAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCCGCGCGTGCCAATGCCGAAAGCTATAATGCCCAACGCCGCATGGAACAAGAAACCGATAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAATCTAGAGCGCGCCATTAAAGATACTGAAGAGACAGGTACAGATGACGCATCACTTAAAGGCATTCGCCTAACACATAAAGTACTGCTTAGCATCCTTGAGAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACA # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.15, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 63919-63193 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWAH01000001.1 Moraxella catarrhalis strain CCUG 353 contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 63918 28 100.0 32 ............................ AATCACTGCGTACGCCGATTGGCAAGATTGGC 63858 28 100.0 32 ............................ AGTAATTTGGGTAATCTTTGATAACCCAAGTT 63798 28 100.0 32 ............................ ATCCGCCATCAATGAGCCAAAGAAAATCAACA 63738 28 100.0 32 ............................ GTAAAAAGTCGGTCAATGCAACGCCTGCCCCT 63678 28 100.0 32 ............................ GATAAGATATCAAGCACTTTATCAGCGTCTGC 63618 28 100.0 32 ............................ ACAGGGGATTTGTCCCAAAAATACAACCAAAT 63558 28 100.0 10 ............................ CTGGCGTTTT Deletion [63521] 63520 28 100.0 32 ............................ AGTGATGCTATCCCATGCGACAGATATAGGCA 63460 28 100.0 32 ............................ ATGGTGATAACCTCACTTTTTTCAATGAGTTC 63400 28 100.0 32 ............................ TTGATGTACTAAAGTCGTGTTAATAACATAAT 63340 28 100.0 32 ............................ TTACCTGATGATACCATTTCCAATTTAACTTC 63280 28 100.0 32 ............................ CTGCCACCTCACACAGTGGCAGAGTTTACCCA 63220 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 13 28 100.0 30 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : TTTAACTCAAGATACGGCAAACAATTAATACCCTTCACGACCGCACAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGGTCGCTTAGAAAAGCTTTTTAAAATACTGCTTGATGGATTCATCCTTCACGACCGCACAGGTCGCTTAGAAATTATTGGTAGGGTAAGCGAATGTACCAAGCGTCTTCACGACCGCACAGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCACAGGTCGCTTAGAAATACTTTAAATAATTGATTGTTCATAGTTTTAACTTCACGACCGCACAGGTCGCTTAGAAAATATTAGATGAAAAGCGATTGGCGGAGTTGGTCTTCACGACCGCACAGGTCGCTTA # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.15, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //