Array 1 4032-190 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXGP01000209.1 Xanthomonas oryzae pv. oryzae strain IXO620 contig_209, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 4031 31 100.0 36 ............................... GCATCAGAACCGGCCGCGCCCTTCGAATAGTCACCC 3964 31 100.0 36 ............................... TTTAAGACAAAACCCGAGTTTGCCGGCGACTGCTGG 3897 31 100.0 36 ............................... TTACCGAGCCGCTTAGCGATCTCGCCCTTCTTGAAA 3830 31 100.0 34 ............................... AGCGGCCGGACGGCATAGTACTTGACGACGACGC 3765 31 100.0 34 ............................... TCTTCACCATGACCGGCGTCGCCATGCCTTGCAG 3700 31 100.0 34 ............................... CCCGACGCCTGCGGATAGGTGGAGCTATCCCCGC 3635 31 100.0 35 ............................... GCATACCGGCGACCGACTTCGAACGCTTCAAACTC 3569 31 100.0 36 ............................... TCGAGCGCCGCCATCCGGCGCTTCGTTATGAGCTCG 3502 31 100.0 37 ............................... GCCTCGTGATTAGGCGCATGCGTGGACGCCCGTACAC 3434 31 100.0 35 ............................... GAGCGCGGCCGGCACTCAGGCATCGCAACCGACAG 3368 31 100.0 35 ............................... AAGGTCCGTCCGTATTACAGCTGACCAACCCAGCA 3302 31 100.0 34 ............................... CTCCCTTGCGGCTGAACTCGGGATCGAGTGTCAC 3237 31 100.0 34 ............................... CTCCCTTGCGGCTGAACTCGGGATCGAGTGTCAC 3172 31 100.0 38 ............................... CTCCTCGAGGCGAACGATTGCCTCGGCGAACACAGCCG 3103 31 100.0 34 ............................... CCGTCCCGATACCCACAGTAATTGCATTGCACCG 3038 31 100.0 33 ............................... GGATTACTTTACGAGCACCCAAAGAGTTGGCTT 2974 31 100.0 33 ............................... CTGCGTCAGATCGGCGAGCGGATCGGGCGGCGG 2910 31 100.0 34 ............................... CTGCACCGCCACCAATACCGCCAAGCACAGTGCT 2845 31 100.0 34 ............................... ATGGCCAGAAAAACACATTGACCATGTGAATGCA 2780 31 100.0 34 ............................... AACCAGTGGAGAGGCAAGAATGAATGCAGTATTT 2715 31 100.0 36 ............................... CAATACACCCCAGTCGCGCCAGAGGTGTTGTTAGAC 2648 31 100.0 35 ............................... CAGCGCAACATGGTGACGGTGCTGGCGGAAGAGCG 2582 31 100.0 36 ............................... AACGACAGTGCCAGCGTGGCTGAGAATGCCCCTATG 2515 31 100.0 35 ............................... CACGGGTACAAAGTCTCCATCATCCGTCTCGCGCT 2449 31 100.0 35 ............................... CCAGACCAAAGGAAGTCGTTCCTTTGGTTGAACAA 2383 31 100.0 35 ............................... AACTGGGCATCACCCAAGCAACGCTCAGCGCTACT 2317 31 100.0 35 ............................... GTCCGCCTGGACCGGTCCGGCTGTTGGTACACTGC 2251 31 100.0 35 ............................... GTTCGATGCAAATGGAATTGCAACAGTAGACGCAC 2185 31 100.0 34 ............................... GTCATCGTCGTTCCCGTCCCGATACCCACAGTAA 2120 31 100.0 34 ............................... TTCGCCGGCTTGGGCCTGGAACTTGACGAAAAGG 2055 31 100.0 35 ............................... AATGTATACAGGTGAAAATTCAGTGGCGCATCGAC 1989 31 100.0 35 ............................... AGCTGCAAGGGCGCGCACTTGTTTGGCCAACTCCG 1923 31 100.0 34 ............................... CTGCACGCGGTTGAACGTCGTCCACAGGTCCGGC 1858 31 100.0 33 ............................... CTGTCAATGACTCTTAGCCCATGGTTGCGGCGC 1794 31 100.0 35 ............................... TAGTTGTGACGATGGATGCTTCTACAATTTCACCA 1728 31 100.0 34 ............................... AGGTGTTGCGCGCTGTCAAAGCGTCTGCACGCGT 1663 31 100.0 36 ............................... ACCAAAGATCGCGCCGACCCCAATAAGCCGGTGGCC 1596 31 100.0 35 ............................... ATTTCATGAGCGCGCATGCGCAGATCAGCAAGCAA 1530 31 100.0 36 ............................... GTGATGGTGCTGGAACAGGCGTTGTCGGCTGTGCTG 1463 31 100.0 35 ............................... TTGAGATAAGCGGCGATCTGGTCGGCCGTGTAACC 1397 31 100.0 35 ............................... TAGATCGCCCACAAAGGACCGTGGATATGTGGACA 1331 31 100.0 34 ............................... TTTCGCGGCGTGATCACCTGGTCGGCGATTAACG 1266 31 100.0 33 ............................... TATACGGAGCGTGGAGGGTGATCTTAAGGTTGC 1202 31 100.0 34 ............................... GTTCTATACGCGGAACGGCGCGGGCACGCTGCTG 1137 31 100.0 34 ............................... GTGGCCCACGTCGAGTCGCAGGCGAAACGACCGC 1072 31 100.0 35 ............................... AAGCTGACTAGCTCGAAGAGCCAAGCGGCGATGAC 1006 31 100.0 35 ............................... ACGTTCAAGCCGCTCGCCCTGGGCGACCGGTGGGA 940 31 100.0 35 ............................... CCGACCTCAAGGCGCGTTCCTCCGGTTCGATCCAA 874 31 100.0 33 ............................... ATGGGTAGTAACGTATCCACGGCCCGTGAAGCG 810 31 100.0 36 ............................... ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC 743 31 100.0 34 ............................... CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA 678 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 613 31 100.0 35 ............................... GCCTATGACCCGGATGCAAGCTACTTTGATGCAGC 547 31 100.0 34 ............................... AGCCATCAACTGTTTGGCGATCTCCGCAACGTCG 482 31 100.0 34 ............................... CAACACCGGGATGCCGGTGCTTGCCAGCTCCCGT 417 31 100.0 35 ............................... TGCGCATCACCCAGTAGATCGACCGTGCTTCGATT 351 31 100.0 35 ............................... TCCACGTCCAGCGACCGCATGCCGCTAACTGCCTT 285 31 100.0 34 ............................... ATAATCGTAGGTCCTAGGTTCAGAGGTTGGGTAC 220 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ====================================== ================== 59 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATCACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGG # Right flank : CATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGGGCATGATGCATTA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //