Array 1 699-998 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWWY01000022.1 Bifidobacterium hapali strain DSM 100202 Contig_22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 699 33 100.0 34 ................................. TCTCTCGCCGATTTGTGCGAACGAACCCGGATCG 766 33 100.0 33 ................................. GCGATCTAACTGACGCTCTGCGCGAGTACGCGC 832 33 97.0 33 ....A............................ ACGTACGCCTACGCGGACCGCGACATTGCACAC 898 33 100.0 35 ................................. AATACGATAGTCCACTAAAATCAATACGATAGTCC 966 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 5 33 99.4 34 GCCGCTCTCCTCACGGAGAGCGTGGATTGAAAT # Left flank : GGCCTCGCGCTTGAGCTCCTCAGGTATGGGCCCGTGGCGAAGCCGGCGTTCGCCGGGCGCGAGCTCGTCAATCCACGAGGCCAGCAGCGTCTTGCTCGGATACCCCATTTGGCGGATCGTGCGGCTCGCTCGCCGCCCGTGCGTCAGGTAATGGTCCACCGCGTCCCGCCTCTGCTCCAACGTGTAACGCGAATACCGCTCGCCACGCGTCGAGGGTATTCCCGTCTTCTATTCCTCGAGCCAGTCCCGATGCCACATACGCAACGCCTCACGACTGGGATACCCCAACTCCCGGATCGCGTCCGCCGCGCAGCACTCATACCTCACATACAACTCCACCGCACGCCGACGCTGCTCCCTCGTATACCTCGCCATGATGGCTCCTCCCGGATCACAGTCCAAGAAAACGGCACCACCTCACACTGCGGAAAAACACTGCCAAACCTGTCGAACAAACATTGAAACAAAACATTGTTGTGTCAGGTCGATGCTCATTGCTC # Right flank : TACCTGTTGGAACACGAAAGCAGATGGCACGGGTACCGTCGCTTTCCTTGCGATGTGTTCAATTGGAAGTGGGCCGTGTGAGAGCGGATTGAGATGCATTCGCGCTTGCATGCACCGCCAACGAGGTGATCTCCATAGAGAGTGATCAGCTAACGCTACGCAGAAGCACACACACAGACGTAATTTCAATCTGCGCCTTCGGTAAGGGCGTAACCAAGACCATCTTAAACTCGACGTACGCTCCAAATGATCTCAATCTACGTTAAAGAGAACGACAACCTTTCACTGGGGCAACCACGAACAAGCATATCCTCTCATCCCAAGCGTTCTTCTCATAGAGAGCGAACTCAGTAAAAGCAAACGTTAATGACGGCAAAGCTATTTCAATCCGTGTGCATCGACGTTACTGAGAGCAAGGTTGATGCACGTAGCAGATTTCTCTCGCTTGGATAGTGCTCAGTGAGCATGAACCGTCACGCACCTGTAGCAGTGCAGCAGTG # Questionable array : NO Score: 9.03 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCTCTCCTCACGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.60,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 2292-907 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWWY01000044.1 Bifidobacterium hapali strain DSM 100202 Contig_44, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 2291 33 100.0 33 ................................. ACGTAGGCGAAATACCGTTTGCCGTCCTTGTAG 2225 33 100.0 38 ................................. GTGTATGGTCATCATGGCGGCGATGAAGTCCTGTCCGA 2154 33 100.0 34 ................................. GTGCTCCTCACCAAGTAAGGACGGTGGAACATGG 2087 33 100.0 36 ................................. ACAGATTTTGCTGCTTTACGGAGCACCCGCCCGGCG 2018 33 100.0 36 ................................. TCCGAATCGAAAAAGAACAGGGGCGACTCTCCGTTG 1949 33 100.0 33 ................................. GACTCGAGGATGATCCGAGAACCATATAGTCCG 1883 33 100.0 35 ................................. ACGTCGCAATCATGGGATCAACGTCGTGCGGGCCA 1815 33 100.0 35 ................................. CAGAATACTGGTGCGATCCAATCGTTTGCGGACGT 1747 33 100.0 34 ................................. TCGGTCGTGAGCTTGCCGGCGCCGGCGGTCTGGG 1680 33 100.0 35 ................................. CGTTCCACAGGCCGTTGATGATGTTCGACCCAGCG 1612 33 100.0 34 ................................. ATCAGCCGCCATTGCGCCGGATCGGTGGTAGTCG 1545 33 100.0 33 ................................. CAGTGCTGAAGCTGCTGGCGGTGACATGAACAA 1479 33 100.0 34 ................................. CATGCGGTCGGGGATGATGGGGACGCCTCGTATA 1412 33 100.0 34 ................................. CATGCGGTCGGGGATGATGGGGACGCCTCGTATA 1345 33 100.0 34 ................................. TCCTACCTGTGGTGGAAACCAATGGACAATTACG 1278 33 100.0 36 ................................. GATGGTGGTAGACGCTTCACGGCTGGTTGTGCCTAG 1209 33 100.0 35 ................................. GGGCATGCTGTCGTGAATGATGCGCAGCTGTTCGA 1141 33 97.0 33 .C............................... ACGGCCTCCTTGTCGCCGCAGAACGGTTCGAAC 1075 33 97.0 35 .C............................... CCTTTTGGGATATTTAATTCTCCCCTTTGGGATAC 1007 33 97.0 35 .C............................... TTGTTATTGCAGGTGATGCCCATATGGCAATCCCC 939 33 97.0 0 .C............................... | ========== ====== ====== ====== ================================= ====================================== ================== 21 33 99.4 35 GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT # Left flank : GATTGAGTATGTTGGTCAACAACGACATCTGCCGGTTGATGATGTCATGATGATATAGACCAATGCGATGGTGCCCGGTTGATGGGAATTGGCTACCCATTTTTGTTGATTGACTGGGATGCGTAGTGTGTTTGTGCGTTATGCGTATTGGTGCCGCTTGTGATTGGCGCTTTGATTACTTGTGGGCACTGCCGAGCGTTGAGCGTGGTTGCGCAGTGCGACAGTCAAGCTATCATGAATATGCGGGCTGTTCGCACCATCGTTGTGCTCGCTGTTGTGCACGTTGAGTCAATGTGGAGCATGCGCGTGCATAGCGATGTTGAAGCAAGTTTTCTTGTTTTTGATTGCAGTTTGATAATTCAACAGGGTTGAATTGGTATTGAGGCGAATTGGGTAGCTGAGGATGCGAGTATTAATGATTGTTAGGCAGCATGAGCGGTAAAATATGATTGTGGGTGAATGTTCTGTCCACAATGCGGTCAGGGCATCTCACGGTCGCA # Right flank : AATGCTTGTTGTGTGTGTTTTGTCAAGTTGGTATCCGCGTTTGGGGGTGGTGACGTTTTGTTGGACTTCGTTGTCTGAATGGTCGTTCAGAACGATATCACATGTGTTCAGGCGACGAGCCCGAGCTGGATGCGCTTGTCCATGATGCTCATCCCGTATTCGAGTTTGATGCGCTTGTCCCGGTACCAGACCATGTACTCGTCCAGCATCGCAATGAACTCGTCGATCGTGACGCCCTGGAAGCTCCTCTTGTGGAAGAACTCTTGCTTGAGCCGGCCGAAGAACCCCTCGGCGGCGGCGTTGTCCGGACTGCAGCCCTTCGCGCTCATCGACCTCGTCAATCCATGATCCGTGCAGATGCGAATCCATTCAGGCCACCGGTAGTGGCATCCGGTAGTGCCCGGATTCTTGCGCACTTTGGTCTTCGCCCGGCTCTGCGACGATGATCAGTTCGCTACTGGTACGCTCTCACCGAGCCGGGACATGTCGAGGTAACGGCG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.10,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //