Array 1 72567-70643 **** Predicted by CRISPRDetect 2.4 *** >NZ_VBSX01000011.1 Lentilactobacillus parafarraginis strain FAM 1079 FAM1079_scf0011, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 72566 29 100.0 32 ............................. ACCATACTTAGTAATTGCATTAAAAATATTTG 72505 29 100.0 32 ............................. CAAATGATTAAATCACAAGTTTCTCAAGGTAA 72444 29 100.0 32 ............................. GAATCATCAGCCACGTTATAAGTATGATGTAG 72383 29 100.0 32 ............................. AAATTTTCCCTATAAAACTACCTTATCAGTAG 72322 29 100.0 32 ............................. TAACATACTTGTGTGCGAAGTTGGAAAGTCAA 72261 29 96.6 32 ............................C TTCTTAGTTTTTCAACTAAGCTCAGCATATCT 72200 29 100.0 32 ............................. GATTATTCACAATCAGCTCCAGATGTTGATCC 72139 29 100.0 32 ............................. TAGTTGAAGATCAAGACTACTGTTTAATTGGA 72078 29 96.6 32 ............................C TACGTTCGCTAATCTGCATATTTTAAATCATC 72017 29 100.0 32 ............................. AACTGAGCTTTTACCTACCCCATTATTATCCA 71956 29 96.6 32 ............................C CTTAGTCATTGCCTTAATTGTTGGCACATATC 71895 29 96.6 33 ............................C CTGTAATCGATTGCTTCATCTTGCTTAAGTCGA 71833 29 100.0 32 ............................. CAGGGCAGTTTTTTTATGCTTAAATGTCTAGA 71772 29 100.0 32 ............................. TACACGGCTTAACGTCAGAATTTAAAGACCGG 71711 29 100.0 32 ............................. AAACTAGCATGTGTTGGTAGACAAATGTGGTA 71650 29 96.6 33 ............................C AACTTACTTGGCTAATGGAGGACATATTAATGA 71588 29 100.0 32 ............................. AGGTAATCATTGAATTGTTACTGGCGCTGTCG 71527 29 96.6 32 ............................C GATTGAGTCAACAATTTCTGGTGTCACCCAAG 71466 29 96.6 32 ............................C CATCTGTGGCTTCCATATCAATGTGTGGATTA 71405 29 100.0 32 ............................. CAAAGGATGGGTTAAAATGTTAAAAAAGAATT 71344 29 96.6 33 ............................C ATTTCAGCATTATTAGGGAAAACTGCTTCCATA 71282 29 100.0 32 ............................. GAGAGTATAAAAATCAGTCCCGGTAGCAAGAT 71221 29 100.0 32 ............................. ACAGGAGCCGCAGACGGCGTTAAGGGATCATC 71160 29 96.6 33 ............................C TATTATGCGGACTTACGACCCAGAAGTGGCATG 71098 29 96.6 32 ............................C AATTACTTTGATACCATTGCAAAGCAAGACAG 71037 29 96.6 32 ............................C GTCCAATAACCACGTTAAGCCGTTCTACCTTG 70976 29 96.6 32 ............................C CTCGATCACGTACGTGGACTACCAAACCTTTA 70915 29 100.0 32 ............................. ATTAACGGCGGTAAGAACTTCGACAAGACGGA 70854 29 100.0 32 ............................. TTTCAATCCGTTCTTTAATTGGGAGAGCGGCT 70793 29 100.0 32 ............................. AAATTATGAGTGAAAAAGTGAAGGTGCCACAG 70732 29 100.0 32 ............................. TGTACGACGGTTCAGAAGTGCGCTTGTACAAT 70671 29 79.3 0 .............C.........C.AAAA | ========== ====== ====== ====== ============================= ================================= ================== 32 29 98.1 32 GTATTCCCCACGCATGTGGGGGTGATCCT # Left flank : GCTAAAAATCAGATTATTGCCATCGGTGCCGTTAAGCGACAAAAGAATGGTGAAGATGTTTCATTTCATAAATTAATTCGAATTGATGGCCAAGTTCGCAAGAAGATTACTGAGTTAACCGGAATCACATCTGAACGGTTAAGTGCAGAAGGCGTTGAGCTGGTCTCCGCGCTCCAAAAGCTGGAAGCCTTCGTTAAGGATGCGGTGATTGTTGGGTATAACCTCCGATTTGATGAGGCCTTCTTATCCTATAATATTCAAAATAACGGACTTCCGGAGCTGACTAACCAGATGATTGATTTGATGCCGGTTGTTAAGAAAGCTAATCAGTTTCTGGAAAATTATCGATTAGCAACTGTGCTGAAAGATTACGATATTGAGAATTTAACACCCCATCACGCATTAGCGGATGCGGAAGCGACTTTGTTACTGGCGATGAAGTTAATGAAAAATGGCAGTTTTCACATTTAAGAATGCTGTTATATCGGCTTTTGTTTAGT # Right flank : CAACATCCCGATCAAGTGTAACCAATCCCCATCCCGCAATTTTCTTCCCATCTCACATTCTTATCCCTGTTCAAATTCCCCGCCGTGAACTAAAATAAAATTAAATTAACGTTATCCATTACAAACCACGCAACGCGGTGACCACTCCCGCTCATCAGTCGAGGTGACGCACATGACCCAGCGATTTGTCCAAACTGAACTTTTAGGTGACTGGCTTCTTCAAACTGACATTCGCCAATCGTTTTTAAAACCGTAGCGAAGGCCGGCAAAGAAGTGGCGGCTCTGTGCCGTCGGGAAATATCGCAGATCATCTACGACCTTCGCGGAAAGTTCATTCTCACTGACATTTTAAAGGCCCTTCGATTTCCGAAGGCAACCTATATGTATTGGCAGAAACGGTTTCACCGGCCTGACGCTGATAAAGCCCTTGAGGACCGGATTCTTGCCGTTCATCGTCAGAATCCGGACTATGGCTACCGGCGGGTGACGATTGCCCTGCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCATGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 84164-83525 **** Predicted by CRISPRDetect 2.4 *** >NZ_VBSX01000011.1 Lentilactobacillus parafarraginis strain FAM 1079 FAM1079_scf0011, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 84163 29 100.0 32 ............................. ACAGGAAGAATCTGCATGTAAACGCGTTGAAA 84102 29 100.0 32 ............................. AGAATTTTTGATTGCTTTACCAGGATTTTTTG 84041 29 100.0 32 ............................. CACCTTCCTATCCCAAATCCTGTGCCATCTGC 83980 29 100.0 32 ............................. CGGTGTCATACATGGGATTGACATTGATTTCC 83919 29 96.6 32 ............................C ACTGGTGAGCCACTAAGAAAATTTGCTACCGA 83858 29 100.0 32 ............................. AAATACAACGCGAAGGAGTAATTGACGATGCA 83797 29 96.6 33 ............................C CCAGCCAATGGTCCCGCCAAGTTCTCAAAGTTG 83735 29 96.6 32 ............................C TGACCGCTTGCGCTTCTTCCAGGAGGTTCTGT 83674 29 100.0 32 ............................. GATTGCTGCTGTAATTCATCCATTTGTTTCTG 83613 28 96.6 32 ........-.................... ATTGGATAGCAACTGAAAAAGGAAGTGATTCC 83553 29 69.0 0 ..................T..AAATATTG | ========== ====== ====== ====== ============================= ================================= ================== 11 29 95.9 32 GTATTCCCCACGCATGTGGGGGTGATCCT # Left flank : TTCATTTAGTTGGTTGGGAAATTATCACCGTTTATGGCGTAACTGTGAGCGTAAGCTCAACACTAGTCTCATGATGGTTTCGTTAGCTTTTATCAGGCTACTTCTTAAAAGATACTAAACAGCTTCTTAGCGGT # Right flank : TCGGATGCCTGGATCATGAGGAATATTGTTATGGATGCAGATGAATTGATAAGGGTGAAACAAATTACAAAGCAGGCTTCACCCTTTAAAGAAAAGGACAGTGTCCCTGTTTGGGAATAGGAGGACGAGATGGATCTTCGGGAGAAAATAAAAGCAATTTTAGATAGTGATATTAGCGCTTATCGAATCGCTAAAGAAACAGGGGTTCCGCAGCCAAATATCTCGAATCTTCGCAATGGGAAACGTGAGATCGGTAATTTAACGTTAGATATTGCAGAAAAATTAGGTAAGTATTACGATTCTTTAAAATAAATTGTATTTTTGCTTGCATATCTATATCATATGATATACATTCTAATTGTAGTATTCCCACGCATGTCAGGGTCTTAATGTACAATATTCAAATTACTTTAATAAATAGTTGAAAATTTAGTCACATATCTTTGAATCTGTTCTACTGGATTGCAATTAAGAAGATATGTAGATACCACATGTATATT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCATGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 973-153 **** Predicted by CRISPRDetect 2.4 *** >NZ_VBSX01000055.1 Lentilactobacillus parafarraginis strain FAM 1079 FAM1079_scf0055, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 972 29 100.0 32 ............................. AACGTTTTCTTCATTAACTGCTGGAATTAAAA 911 29 100.0 32 ............................. TAGATGGTTATTTAGCAGACACCTATAATTCT 850 29 100.0 32 ............................. AAAAGTTGCTGATGACAGTAAAGTTGTTCATA 789 29 96.6 30 ............................A CAGAGATTTTTGGGGCTGCCTCTAGTGGTA 730 29 100.0 32 ............................. TGATCTGATCCCTTTAAAGCATCAAATGAAGC 669 29 96.6 32 ............................C TTATAGTCTTCGCCAACTTTAATTACCTTACA 608 29 100.0 32 ............................. TGTAGAGGTTATTTTGGGGTTGATTTTAGGCT 547 29 100.0 32 ............................. TGAATAATCAGCTGAAACAAGATCAGTAATTC 486 29 96.6 32 ............................C ATGGCGGATGGTTATTCACGGTCGGCCAAAGT 425 29 96.6 32 ............................C AATATTTAAAGCAACAATCGATAGAGCAACAA 364 29 96.6 32 ............................C TCGTGCTTTAGGCGGTGTTTCATTGAACATGG 303 29 96.6 32 ............................C TTATATCTGGATATTCAGCATTAACTTTAGCT 242 29 100.0 32 ............................. ACAGTGCTTGTGATGAGAGTGGCATATCTAAA 181 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.3 32 GTATTCCCCACGCATGTGGGGGTGATCCT # Left flank : TGTTTAATAGAAACATTTTGTGCCATAGTGAGTTTGCTTCCTTTCTAGAAACTGGCGCGATCATCCGTGAAGGATAACGGCGACAGAAAACAGACATTAAATTGAACGACCAACTTCTATCCAAAAGTAATGGGGAAGGTAAACACTTACATAAACGCGATTTTGGTTTTGCCAAATTAAATTATCCACCATACTTTTGGTAACGCTTACATTTTATTCGGTTTTGGAAAATACACAAGTAATTAGACTTGGGATTGAGGGAGCTGAATTGTATTGCTGGTAGATGAGATTGACTAGTGTGTGAGCAGCAATAGCCATTTTGACCGCGGAAGTTTTTATGTAAGGGAGTCGTTTTGAGGTGAGAATTGTCCATTTTGCAGTGGTGAAATTGGTATAATGAGATTGATTAGATCGTGAACGGCGTTTTTGTCTGAATACAAGTTAATGAAATTTTGGTTATTTCTGAATTTGGAATCGCGGTATGACGGGATTGGTTTAGT # Right flank : GTATCTTTGTCGCAACCCCACGCTTTAGAAGCTGTTTAGTATCTTTGATTTTGACCCAATAATTTGATAAACTACTGTCAAAAAAGTTGGTGATCATATGCAACATTTTAGTCATCATTACCAAAGCGATATTTCTCGGCAACAATTCGATTT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCATGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 6344-4420 **** Predicted by CRISPRDetect 2.4 *** >NZ_VBSX01000055.1 Lentilactobacillus parafarraginis strain FAM 1079 FAM1079_scf0055, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 6343 29 96.6 32 ............................C TAAACGGGGGCTGTCAACCTCCCGATGATGTA 6282 29 96.6 32 ............................C CGCTTGTATGCTTGGTGGAAAAAGGTGGCGGC 6221 29 96.6 33 ............................C AGTGAGGAAAAATTTTGTCTGAAACAAAAAATA 6159 29 100.0 32 ............................. CAGTTAGCTATTCAAACACTCAATCTTCCTCA 6098 29 100.0 32 ............................. AACCATGCTGACAATAAGCGCTACGGTTATGG 6037 29 100.0 32 ............................. TGTTGGCACATATCTACCCCGATACTCCTCAA 5976 29 100.0 32 ............................. ATGCTTTAATACTGCTATTAGCATGCCTAATA 5915 29 100.0 32 ............................. GGTAACATCGGTTTAGTTATGGGGAATAACTA 5854 29 100.0 32 ............................. GGGTTGAGGAATACAAAGAAAAGCAAAAGTTG 5793 29 96.6 32 ............................C ATTAGGGATACTGAAAACTTTGAATTAGCCTA 5732 29 100.0 32 ............................. CTTACCTTGCAGGCAAAAAAACGGCCTCAACC 5671 29 100.0 32 ............................. ACAATGCCGGTGCAATTGCCGGAACGCAACAA 5610 29 100.0 32 ............................. GACGATTATTCAGTTCTTGGTTTAAAACTTGC 5549 29 100.0 32 ............................. CCTGTTTGTCATGAACCACCGGCCACCAGAGC 5488 29 96.6 32 ............................C GGAACTTGACTATGATAAGAGCGATTCTGAAA 5427 29 96.6 32 ............................C AATAATGATTTAAACAACGCTTTAAGTGCTAA 5366 29 100.0 32 ............................. TATGAACAACTTTTGAATCGTCAGCAGGTGTG 5305 29 100.0 32 ............................. TATTGGCAAAGCTAGTAAAAGACTTGCTTTCT 5244 29 96.6 32 ............................C AACTGCTATCGGTTTGTTGATTAAAGCTGGGA 5183 29 100.0 32 ............................. GTCCCTTGATCAGGCTTAGGAGTAGGAATCGT 5122 29 100.0 32 ............................. CTATCGATAAACGAGTGTCATCAATTGGATCA 5061 29 100.0 32 ............................. GCTACTAAGTTTTATCGTGTGGGTGTCCAGTA 5000 29 96.6 32 ............................C TTAATTTATCATATCGATGCCAAAAAATATTA 4939 29 100.0 32 ............................. GCTTGGTTGGATGAATAGCCTCGCTTAACAAG 4878 29 100.0 32 ............................. AACGTGATGCGAGAAAAAGATAAGTTTGACCG 4817 29 100.0 32 ............................. TGATCGTTTCCAAAGACGAAAAATTAACCGCA 4756 29 100.0 32 ............................. GCCAAAGCGTGGCGCCGTTGCTTGTCATGTAA 4695 29 93.1 32 ...C........................C GACGTCATGGAAACTGAACAGTACAACGTCGT 4634 29 93.1 32 ...C...................A..... GAGTTAAGCAAGCACGGGATCGATTTCACAGT 4573 29 96.6 32 ..................A.......... CATGAACCGAGATTTTCCAGATAACCGTAAAG 4512 29 89.7 32 ...........AC...............G AACTACAAGTTGAGCTGGACGGACATCGCCAA 4451 29 89.7 0 ..A..T.....................T. | GT,A [4423,4431] ========== ====== ====== ====== ============================= ================================= ================== 32 29 98.0 32 GTGTTCCCCACGTATGTGGGGGTGATCCT # Left flank : GAAGGTATTAAGATCAACTATAACGATGGCTCTAGCAATGCGAAGCCGATTGCTGCTCATCATGCCGCAACCCATCACCGGCAATCAACGGCAAGTCGATCTCAGGGCGGCAGCGCAACGCAAGCCGCTCACTCGACAACTAAGCAGGGCAAGTGGACGGTGGCGGCGTCGGGGATGGTGTTTGTCTCCGATAGCAACAAGTTCTATACGGAAGTCACTACCCCTGGGAATTATCAGTATATGAGCAGGTCACAGGCAGCCGCGAGTGGGGCAACCCAAGCGGCGCGGGGGAACCAGTATGCCCGGCCGTGATAATTTGATTATTAAAATTGTCGTTGATGAAGCAGGCAATCTTCTTTGGGGAGGATTGCCTGCTTTGCAGTTGTGAAATTGGTATAATGAGGTTGATTTGATGGTGAGAGGTTTAGGAATGAATGCAAGTTAAAGAAATTTGGGCCATTTCTGAATTTGAAATCGCGGTATGACGGGATTTGTTTAGT # Right flank : GTGACGATAGATTTGTCAGATCAAACTATTAAAGAGCTGGCGGATCGGATGACCACCAAAGGATTTGGCTTTTTGAAACCTGAATCTGAGAATCAGTCTTGAAATATTAAGGACTAATTGAAAAAACTATTGGTTACTGGAAAGTTATTGAGATGTTGAGTTGCCCTGGCTACAGGATGACACCTCGTTATTAATTAACTCGGCCATAATGTTGATAAAAAAACTATACGTCGTTGTAAACGCAGCGCAATTTGTGAGATATTAGTAGTGTAATTTGAGGTTGATGAAATCAACGGCATGTCCAATGATGTCCAAAATGCGCTCCCATTATCCTTTTATTCTCATGGAATTGTAGTATAGAAAAAAATTTAATATTTTTCCTCTCTTAAAATGATAGCGGCTTTGAACTTCGACTTCGTGTATCCGTTTTGTTAGAAAAAAGCACTTACTTTCTAGGATACATAAAAACCTCAATCAATTGACTGGGGTTTGTGTTGGAT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGTATGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3454-1717 **** Predicted by CRISPRDetect 2.4 *** >NZ_VBSX01000061.1 Lentilactobacillus parafarraginis strain FAM 1079 FAM1079_scf0061, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3453 29 100.0 32 ............................. TTGGGTGCTCAATAACTGCTTTTGTTGGTTGG 3392 29 100.0 32 ............................. GTAATCTAATACAATCATTAATTTAATTTTGA 3331 29 96.6 32 ............................C GAATTGCGCAATGCGTTTAGATAAAATAAAAG 3270 29 100.0 32 ............................. GAAATGTTTTATGGCAACCCTAAACGAATCCA 3209 29 100.0 32 ............................. AATCAAAAGCTACAAAGCTTATTAGATCAGCA 3148 29 100.0 32 ............................. GTCCCAATCCTCTTTACCTTGGTATGAAACTA 3087 29 100.0 32 ............................. AAAGGTAAATCAATAATATCAGTAGCATCTAA 3026 29 96.6 32 ............................C GCTGCAGATTGGCATATTGGTAATCAATTTTC 2965 29 100.0 32 ............................. TAGGAAGAAGTGACTAAGAGTGGCTAAACAAG 2904 29 100.0 32 ............................. AAATATCGGGAAACCGAGGGTATAAATTAACA 2843 29 100.0 32 ............................. GGTAAACGTGGATTAGCCCACTTCCCTTTAGA 2782 29 100.0 32 ............................. GGTTACCGTAACTAATTTGCCTTTTAGGTTTT 2721 29 96.6 32 ............................C ATTAGGGATACTGAAAACTTTGAATTAGCCTA 2660 29 100.0 32 ............................. GAGGTAGTTCAACCCTCTGAACCACATGTTTC 2599 29 96.6 32 ............................C GGAAGTGGTTAACGGCATTGAGGACTTTGTGA 2538 29 96.6 32 .........C................... CGTGGTGGTTTTAGCCGTTAGTGGTTTTGCTA 2477 29 96.6 32 ............................C AAACAGTAAGCCATTAAGTGCAAAAGAAGTCA 2416 29 100.0 32 ............................. CTTTTGGACCGGTTCCACCCATCAAATAAGGT 2355 29 100.0 32 ............................. ATTGACTTGTCTAATAAAATGTCTGAATTATC 2294 29 96.6 32 ............................C AAGATGACAAGCTCTATGCTGAATATGATTGA 2233 29 100.0 32 ............................. CCGGGTCGATTGAGCAGGATAGCAACGTCGTG 2172 29 100.0 32 ............................. CACCAGAATTAAACCGTTTCGGAATACTGCTA 2111 29 100.0 32 ............................. AAAGAGCGATGAGCAAAAGAAACGGGAACGGG G [2089] 2049 29 96.6 32 ...........A................. ATCAATAACGCGTTTTGAGGCTTTATTCTTGG 1988 29 93.1 32 ...........A................C TGCCATGCGTTCGCATTCGCCACGCCGGGTTG 1927 29 96.6 32 ............................C TTGGTACCTTTCGGGAAACTGTCAACTTTCTG 1866 29 89.7 32 ......T...........A.........G TATGTACGCACACAAATCGACAAACTCTTTGA 1805 27 86.2 32 ..GC........--............... GCTTGCATGGGGCCCGGCTTCCCTGGGCCTCT T [1784] 1745 29 86.2 0 ..G.........G..........A..T.. | ========== ====== ====== ====== ============================= ================================ ================== 29 29 97.4 32 GTATTCCCCACGCATGTGGGGGTGATCCT # Left flank : TCGTCACAATTTGACAACCCGTTACCTGCTAAGTAACGGTGACTACATCACCGGAAATCGTAAATTGGTGAAGATGGGCCGCCACCAGCAGCCAAAACGGTTGGTTGTGAAGAAGACGATTAATCGTTATGGGGATGCAAACTTTACCAAGCGCAACGGCCACTTCAAGAAGGGCACCAAGCTGACCATTAAGAAGGTCACGTTCAGCCACGAATTTTCAAGAACGCGGACTGGGGTTCAGCGGTATGTTGTGAATGGTGGCTATGTAACGGCTAGCCCGAAATTTGTGACAGTTCAGTATTAAATTTTGATTTGAGAACCTGGGGGACCGGGTTCTTTTTTGTTCGATGAAATGTGTGCGAATCTGATTTGGATTTTGTGGATTAGGCGAGATTTGTTTGCTATGATTAGGTTGGTTGCCAAATGGAGTTCGAATGCAAGTTAGGGTAATTTAGCTAATTCGTAATTTCACAATGCCGGTATGACGGGATTTGTTTAGA # Right flank : CAAATTATTGATTACGCAGCCAAATTGGACAGAAAGATTGAAAACATCATCGCCTCCATTTGATCTTTTCCCGGACTAAAAAATTGCACAGATTGGAGCAAGTTATTTGAACGCTGTCACCAAAATCAAAATAGCCATATGGTTGTCACGCTTGGCATACATCCTGTTCTTCTTCTGGCTAATTGTTGATTTCTTTGTACTAGACCGCAACGCCGGACTACCCGGATTACTATTCCTTTTAATCGGTTTTCCCTTAGTTTACTTAGAAAATCAATTAGAAAAATTAGATCCGAAGTACCGGAAATCGCTAGCAGGCACGGTCTGGCGATACCTTTTACTTCCGTGGTTTATTGTGATGTAGCATTTTTCGCACTCACTTTAGACGCATACTATCACTAATCTTTGTCGGCACGGGCGACGTCACGCTTGGTTACATTATTTATCGTATTTTTCTTAACCGAGACGCTTTTATAGTGCCGACGCTGGGAAAGGGTATTGGG # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCATGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //