Array 1 148304-147848 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZGN010000004.1 Pectobacterium versatile strain A095-S3-F16 A95_(paired)_trimmed_(paired)_contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 148303 29 100.0 32 ............................. ACCCTACCATCTGGATATTCGTGGTTATAAGT 148242 29 100.0 32 ............................. TTAAACCCTGGACTCTGGTACACGATGACCGA 148181 29 100.0 32 ............................. CGATCGTCGTGACCAGCTATCACGACCAACAT 148120 29 100.0 32 ............................. AAAACGTGTTTATGGGTTGGTAATGGCTTTAT 148059 29 100.0 32 ............................. TAAAAACGGGTGATGCTCAGGCGCAGCGTGAT 147998 29 100.0 32 ............................. TTACCACTGGTATTTCATACGGGGCGTCCGGT 147937 29 100.0 32 ............................. AATAGGCAAACGCAGTACCCCAAGGGGCAAAT 147876 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTTCCTGCTAATTATTTACTGCGTTACTTCAAGACGATGGATATGCATTGATTGCTTCCAATTTATGTCAATATACTTGTAATCATTAGATATAGTGGATGAAAAATATTGGCATTTACAGGTTATATCGATATTCGGTTGAGAAAGAATATTTTTAGCATGGAAATTTTTACCGAGAAATAGAAATAAAAGCGCAGTGGTATAGCTCTTGCCGCAGTGTGCAGCGTTTAATTCAGCAACTGAACGTTTTCCAGATGTATGAAATCAAACTGGCAGATCAGGGAAACGTGGTGATAGCGTGGGCGAAAAACACGGAATCTGGCTTTGAATTCCAAACCTGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGCCTGCGGTTAGTCTCTTTTTCATCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGGAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAACTCTCTAATTTTAGA # Right flank : GGCTTATACCCCTTGTTGCATGTTGGTCTAAATATTCTCCGCACGGAACCAAATCCCGCTTCTGGCTGGCGTGATGGGGGATTGCGTGTCAGTATTAAAGCACGCCATTTTTTGTGCTCACCGTCATGGTGAGGCGCTATGCCAATGATTTTTGTCTTCCATACGTTACCGTAAGGAGGTGATATGAAAGTTGAAGCCGCAGAGTCGTCCGTTTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCTACCGAGCATGCAGAGAAAGCGGCGCTGTCCGAACAGCTTCAGTCTTATCAGGCGGGCAGCGGTGCCGTTCCTGCTGGTCAGACGACACGGTATGATTTCACCCGCATTAGCCCTGCTGAACTGTATGAAACGGTTGAAGGCCTTGTCAGCAGTGGTCGGCTGGGGCGTGAAGAAGGCTCCGCGCTGCTGGGTTTTGTCTCGTCGCCGAGAGCCGAAGGAGGAAGCATTCCGCCTTCCAATGTGTTCCAGCCGAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 152926-151062 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZGN010000004.1 Pectobacterium versatile strain A095-S3-F16 A95_(paired)_trimmed_(paired)_contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 152925 29 96.6 32 ............................A CTTCAATCCAGATGACGATGCGCTATGCACAC 152864 29 96.6 32 ............................A CCAGCACTGACCGAAAGCGAAATCACCCGCCG 152803 29 100.0 32 ............................. GAGCGGACTCTGTCGAATAGTAAAACTGTCTA 152742 29 100.0 32 ............................. TACTACAGTACACAGCTATGCGCACTAAAGAA 152681 29 100.0 32 ............................. TCGGCAAATTTGCCATTGTCATCGGGGTACAG 152620 29 100.0 32 ............................. TCTCAGCTACTGTTTTCATTTGAGAGCTACAG 152559 29 100.0 32 ............................. AGTTATCAACGGAACTACAACGCGTTAAGAAA 152498 29 100.0 32 ............................. GCATGGCGCGTAGTGTTTGGAGGATTTAAATC 152437 29 100.0 32 ............................. CTCGTGTTCCCATCAGGTCTGCGCTACTCATA 152376 29 100.0 32 ............................. TTTCCGCTCTGGCTATTTACAGTGGCGATGGA 152315 29 100.0 33 ............................. CGACTGACATTCACCCGCCTGTGCTGTGAAGTC 152253 29 100.0 32 ............................. GGCGCTTTTAATAACTACTTATCTGCAATGGC 152192 29 100.0 32 ............................. CTATTTCTCGTTTGTATGAGCTAGGGATTTTA 152131 29 100.0 32 ............................. TCTTTGTATGCCTAGGTTTTTTGAGCATAACG 152070 29 100.0 32 ............................. TTTGGCTATACTCAGCAGGTATATCACCGCCA 152009 29 100.0 32 ............................. CATCACCAGATAGCTGCCCTAACTCATGCCGA 151948 29 100.0 32 ............................. CGTTGTAGGTGGTGTTAAATGCCATAAGAAAT 151887 29 100.0 32 ............................. TAGTTGACGATTATAAAAAATTCCTTCTTGCA 151826 29 100.0 32 ............................. GGTCTATCTATAACTCTGCATCCCACTCATTT 151765 29 100.0 32 ............................. ACGAACGCCGGATATTGCTGAACTTGCTGACC 151704 29 100.0 32 ............................. GCGGCGCTCAAACAATTACATTCTTGCCAGTA 151643 29 100.0 33 ............................. AGGAGCGTGATTAATGAATAAGAAGAAAATACC 151581 29 100.0 33 ............................. TTATGCATGCAATGGGGAACAAGCAAGAAGCAA 151519 29 100.0 32 ............................. AGTAATTTACATAATGTCGCTTTGGTCGGGAT 151458 29 100.0 33 ............................. GAAATGACTACAGGCTAATTGTTGCCATTGCAT 151396 29 100.0 32 ............................. GAATATCACATCCTCAAATAATTGACAGAGAT 151335 29 100.0 33 ............................. GGGGTATGTCCGGTATCTCATCGTTGTTTTCAC 151273 29 100.0 32 ............................. GCCATGCTGCCGATGAGGAAACGAATGAAACT 151212 29 100.0 32 ............................. CTATAGACTGTCGGTGCCGGAACTTCCCACCA 151151 29 93.1 32 .C...........G............... CGTGCGCCGGAGCTGGTCTGCTGAACGATCTG 151090 29 93.1 0 .............T..............C | ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAGGAAGTCTTGTCTGCGGGTGGCATTACGCCGCCGCTACCGCCGGACGATGCACAGCCTCCGGCGATCCCAGAACCGAAACCATTTGGTGACAGCGGTCACCGAGGACAAGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTCCCGCCGCGTTTGCGCGGCAGGCTGGCAGTGTGGTTGCTGGAAGTCCGCGCAGGCGTGTATGTCGGTGATACGTCACAGCGGGTAAGGGAGATGGTCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTGGTGATGGCGTGGGCGACGAATACGGAATCCGGCTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGTTTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : TAATCCGTTCGCTAAAGAATTAGCTGTTCTGGCTCACAGTTGTACAGCTTAGCTAGCTTTTTTCGGGTGCGTTTCTGCGGTCTTGAATCTGGGGATTCAAGCTGAGAGACGGCGGCTTGGGTAATGCCAAGTGCGGTTGCAACCTCTTGCTGTGAGAGGCCCCTAAAAATTCGCCAGGCTGCCTGTAAGCTGATGTCTTGATCAATGTGAATACTCACTACTTCATGAGGAATGGAGACATCATCCTCTTCGCTATGAGCGTAGGGAATGCTCTCATAAAGGGCGGGTTCATCAGCGTTTGCGATAAGTTTCTGGTATAACTCATACGGAACAACAGCATATTCAGGTTTACCGCTTTTATCCCGAATGACTTGTATGCTCATAGTGTATTGCTCCAACATTTTCTTGCGATGGGTAAAAATCAGTTGTGGTGTAAAGAGGGATACGCTTCCCTCCTCAATATGTCGTTGTGGTCCTTCGCTTGACTTCAAGTATCTCGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 233514-233965 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZGN010000002.1 Pectobacterium versatile strain A095-S3-F16 A95_(paired)_trimmed_(paired)_contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 233514 27 89.3 32 T.........-...C............. AGGCACAATTCTGTTGTTGTTTTTCAGAGATA TA,G,G [233517,233520,233530] 233577 28 100.0 33 ............................ CATCTATGCTTTCACCTTCATTTATCTCCGTAT 233638 28 96.4 32 ............G............... ATACCGCAACGCCCAGCAGGATGAGCAACGCA 233698 28 100.0 32 ............................ TTGAACAGATTGCATGGCGCACAGGCTGGGAA 233758 28 100.0 32 ............................ AGGATTGGCGCTCACTATTCATGCCATTATCC 233818 28 96.4 32 .............C.............. CCTAAATCGGGATAGCGCATTGAGTACGCCGT 233878 28 92.9 32 ........T....C.............. TTTGTTCGTTCAGCGTCTAATGCCGCTATTTG 233938 28 78.6 0 ...........C.C......T...TCC. | ========== ====== ====== ====== ============================ ================================= ================== 8 28 94.2 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CAATGGTCGGTTCTACATCGCATTTCTAAGCTGCCTATGCGGCAGTGAACAGAGAGAAAGAACATAAGCGATCACTGGATGCTTTCTAAGCTGCCTATACGGCAGTGAACATGGTAATGCGTATTTTGATGAGTGCTGTGTTTTTCTAAGCTGCCTATACGGCAGTGAACATACAAGGGTGTTGCGGCGGTATTACCACAACTTTCTAAGCTGCCTATACGGCAGTGAACTTCCGCATCTTTTCGACAACGTTTTATTTTTATTTCTAAGCTACCTATACGGTAGGAACAGGTGATTAATGGGTTCCCTGCCCTTTACTCTTTCTAAGCTGCCTATGCGGCAGTGAACTTGGTCGGCGAACCGGCGTACTAACCCGCTTATTTCTAAGCTGCCTATGCGGCAGTGAACTTGCTCAGCAGGCGGCACTGGCTGGGCTGCTGTTTCTAAGCTGCCTATGCGGCAGTGAACTATTACCCGACATGCGGGGAGAGTTTATGCGT # Right flank : ACGACCTTAAGCGCTGTTGTCTGGCTATTATCGAGGTAGTACTGCGCCAGCGCTCACCCCCTTAAATAACGCATATTGATGACCTTATTTCGTAACGTTTTTAAGTAATAAGTTTCTTTTTAAGGGAATGCAAATTGTGTATTGGGTATTATTAATATTTAAAAATCATCATTTTTCCGTTAAAGTGCCCTTACAGGGAAATAGTTCGTTGACTTAAGTCAAATTCAAGGGAGTGAGTGACTATGAAATACGATCCCGTTTTAAAAACGCTTGTGGATGATGACTATCGGCTAGAGGATCATCTTGATTTTAAAAAGCAGCATGCAGATATTAATTATCAGAAATTACATGCTCAACTAAATGAAATAAATAACGATAACATTCACGCCATATTGACTGTGCAGGAAGCGACGTATTTTTTAAAGACGTTATGCACACCAAATCCTAATGATTCTTGGAAAACGGCAGTATTTGGCTGTACCGATCCCATCTCGTCGTTT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //