Array 1 1181612-1180309 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061007.1 Saccharopolyspora spinosa strain CCTCC M206084 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 1181611 30 100.0 38 .............................. TTGCTCTCGTGCTCGGCGGGGACCGGCGTCGTGACCGG 1181543 30 100.0 36 .............................. GGTCGTAGCCGGCGGCTCGCAGCGCCTCGCGCGGAT 1181477 30 100.0 37 .............................. AGCCCGCGTAGCGCGTTCGCCCACGCCAGGGAAATGA 1181410 30 100.0 37 .............................. TCAATCAGCAGCAGCTCAAACGGCTCATCGGCGGAGT 1181343 30 100.0 35 .............................. ATCATCGACGACCTCAGCCCGTTGTAAGCGGCCAC 1181278 30 100.0 35 .............................. GCAATCTGATGAGACACATACAGCGCGATGAACAC 1181213 30 100.0 42 .............................. ATCTACGGGGCCTGCTGGACCAGCAGCGGCTCCGTCGTCGCC 1181141 30 100.0 35 .............................. CCGCCGGTCGCGCGAACCAAGCCGGGAAGGCGAAG 1181076 30 100.0 37 .............................. GTGATCACCACGCTGTAGCGGCCGAGAAGCTCATCCC 1181009 30 100.0 40 .............................. CGTTGGTCGCCGCCGGGATCGTCCCGCTCACCACCGCCCC 1180939 30 100.0 36 .............................. CCCCGACTGGCCTGGAATTGTCCGAAAAGATCGCCG 1180873 30 100.0 38 .............................. CGTACGAGGGACCTCGCGACATTGCCGGGCGACGCACT 1180805 30 96.7 38 T............................. ACGTTTCAAGGGCATGCCAAGCACGGGACTGGCGGGAC 1180737 30 100.0 38 .............................. TTCTCAGCGCCAACGGCTGTACCGATGTTCCCCGAGGC 1180669 30 100.0 37 .............................. ACGTTCCAGCGCGTTTAGTTTGGCCGGGCTGTACCCG 1180602 30 100.0 38 .............................. GGAAACCGAACGCATCGACCCGTCCCGCCGGCGTCCGC 1180534 30 100.0 36 .............................. ACGGCTTTGCCGTTGACTTCGACCTGGTTGTGCCCA 1180468 30 96.7 37 .......C...................... GTAATCACGATGTCGCGGAACAGTCGGGGAATGGAGG 1180401 30 100.0 34 .............................. ACTGGTGCCCCACCCGCTACGCCGCGATGGTCAG 1180337 29 96.7 0 ..................-........... | ========== ====== ====== ====== ============================== ========================================== ================== 20 30 99.5 37 GTCCGCATCGCCCCTACGAGGGGTAGCAAC # Left flank : CCACCGTGAAACACCGCGAACTCGGCCGGAACGTCACCTACGACGAACTCATCTACCTCGACGCACTCGCCCTCACCCGACACTGCCTGGAAGACCAGCCCTACAAGCCCTTCCGCGTCTGGTGGTGACAGATGTACACGATCCTCGTATACGACACCGCCGTCGAACGCAACGCCGCAGTCCTACGCACCTGCCGAAAGTATTTGCATCACATGCAAAACAGCGTCTTCGAAGGAGAACTCAGCCAAGCCCAGATCGTCTACCTCGAATCAGAACTCCGCCACCACATCGACCCCGACTACGACCACATCCTCGTCTACACCTTCCCACCCGGCACCACACCCCACCGCCAAGCCTGGGGCAAACCCGACGACCGACCCCACAACATCCTTTAACCACAACAGAAACTCACCCACGCCAACCGTCAAACCCCACGAACGCTGCACCCACCCGCACATTGACAACATCAACAGCGCTGCGACCAGCAGATTTACCCTCGG # Right flank : TCCCGTTACTCGCCCCCCGTAGCCGCTGGCCCGGAGGGTGCGAGGGTACGAACGGAGACCCGTGTGCCGGGGTGTGGAGCGTGGTCGGTGAAGTAATCGAAGCCACGGTACACCTTCATTTGCAATGGCTGCTGACTTCTCGTGCTCGGTTGGTGTCGTTCCGCTGGCAGCTGATCTGCGTCGTGTCCGTTCAAGCTGCCTCAACCGCAGGGAGGGCGTTTAGTCCTATTTCCACGGTGGTCGCGGCTGCGTCGTGGCTGCTCCGCTGGTCTAGCAACGTGGTGAGTGCTGTGGTCCAGCGTTGTTGGAGGGCTTGGAGGAGCCGGGTTTCGATTTCGGGGGCGACGTGGGAGTAGATGTGTTCGATCTTGTCGGGGATGACGTGGCCGAGTCGGCGGGCTTGGGCGACTTGGGGGATGCCGTCGGCGATGAGCCAGGTTTTGTGGCTGTGCCGGAAGCCGTGGAAGACCAGTCCGGGCACGATCGGTTGGAGGTGGTGC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCATCGCCCCTACGAGGGGTAGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 2 1191584-1190493 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061007.1 Saccharopolyspora spinosa strain CCTCC M206084 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1191583 30 100.0 35 .............................. ATGCAGTCGACCGTCCACAGCGGAAGGCCGGTGTC 1191518 30 100.0 34 .............................. AACAGCAGCAGGACGTGCGCGTGGAGGTGCCAGC 1191454 30 100.0 38 .............................. TGACACCCTGCACGCCACCGTCGCCGCCGCGCTCACGC 1191386 30 100.0 36 .............................. GCGCTCACCTCGTCCGGCGAACGTAGCGGCGCTGGC 1191320 30 100.0 37 .............................. CCTACGAGAAGGAGTGGGCTGCGAACGACCCGGCCCG 1191253 30 100.0 37 .............................. GAGAAGCCCGCCGACACGGTGGCCAGCGACATCCCCA 1191186 30 100.0 37 .............................. GCCGACGCGGGCGGGCTAGAAACATAAGTGCGGCCCC 1191119 30 100.0 37 .............................. GAGAAGCCCGCCGACACGGTGGCCAGCGACATCCCCA 1191052 30 100.0 37 .............................. GCCGACGCGGGCGGGCTAGAAACATAAGTGCGGCCCC 1190985 30 100.0 38 .............................. TTTCCTTGCGCAAACAGGAGTCCGGCGGTTTCGAGATC 1190917 30 100.0 35 .............................. CCGAAACAGCCAATGGCCGTCGCCCGGCAGCTCCA 1190852 30 96.7 35 ..................C........... ATCTCCCACAGATTGATGGTGCCGCCACCTAGCGC 1190787 30 96.7 38 ............................G. GAGGACCACTACAACACCGCCAACATGATCGTTGACGT 1190719 30 100.0 36 .............................. AGTACCGCCAGGTATCCCTCCACCAACGGCTCATCC 1190653 30 96.7 34 .....................C........ TCGTTGGCGATCGGCTCGGGGGTGCGCTGTTCGG 1190589 30 100.0 37 .............................. GTGCTGGTCACCGAGTCCAACGCCCAGGCCGCGGACG 1190522 30 86.7 0 ...........TA..G............C. | ========== ====== ====== ====== ============================== ====================================== ================== 17 30 98.6 36 GTCCGCATCGCCCCTACGAGGGGTAGCAAC # Left flank : TGCAAATGGGGTCACATTTCACGATCACGCTGTGTAGTAGTTGGTTAAGTTTCGGCAACAGATCCGAACTGCGGTGATGGGCGTTGAACGGCGGTGCGCTGGTTGGCGGCGGTTGTCGCGAGCCTGAACGCGGGTGCGAGTGGGTGTGTTCCGTTCGCGGTGGTGATGTGCGGAAGGGGGCAGTCGAGGGCTGTTGAGATTTGCAGCTGCACCTGCAAGCTCCCACAAGCGATCGGGTACCGGGTCCCGAAGGCGTGGATAGTTTTTGTGGTGGTCAAGTGTGGTTGGCAGGCGAACGATCACGGAGCGGTCGTTAGCAGGGGGACAGGAGAATCCGGATCTCATGGCCGTTGGCGTAGCCTCGGTGCGGTTGCGAAGACTCGAACCTAGCTAGCCTGGTCCAGAAGCCCACGCCGAACACCTGAAGAAGCCGAGAATTGCTGCAAATGCTCGAACCTTGACAAGATCACCATGCTTGCGACCAGCAGCTTTACCGTCGG # Right flank : AGGATCTTGAATCGGGTGCCGGAGTTGATCACGCGTATTTACGGACGGCCGGTTGTTTTCATCGTGTTGGGCGGTGAGTTGCGCGAGTGTCTGATCAACAAGTGGTGTCACTTCACATCGGCAAAGTCATCTGCTGCACACGGTGAAGTAGGACCCATCGGCGTCCACTGGTCCGTTGAGTCGTCGCCGTTGGGGACTGCGGTCGCACGTGAAGATCAAGTCGGGGTCAAACCGACAGTGTGGTCGTGGCGAGCTTTTGTCGCTGTGGTCGGGTTCGTGACTGTAGTGCGAGTTTCAGCGGTCGGCCGGTTGTGTTGTGTGCTGGGCAGGTTCTCTGAAAACTGGTTGCAGAGCCCGGTGGGCCCTGTTCGTGTGCGTTGGGCTGAATGGGTGAAGTTGGTTTAGGGTGGTGTCGGCTGCGGGCCGCTGTGCGAGTGAGCGTGCGTCAGTTGCGCAGTGGTCTGGTATCGGCTGGTTCCCTGGTGAGGGGTTGCAACGTA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCATCGCCCCTACGAGGGGTAGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA //