Array 1 32-487 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRNK01000011.1 Cronobacter malonaticus strain cro2834C2 contig11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 32 29 100.0 31 ............................. CAATGCCGAGTTTATCGCTGCCGCAAACCCC 92 29 100.0 33 ............................. TTGGGGATTGCTCCACGTAAACCTGTAATGCTC 154 29 100.0 32 ............................. GTCTGGCTCGCTATTCAGGACGTAAGAGCGGA 215 29 100.0 32 ............................. GCACGCCTGCTGCGTTACTGACGTACTCCTGA 276 29 96.6 32 ............................A TAAGCAGGAGCCGCCAGCGGAGATGCAGGCGG 337 29 100.0 32 ............................. TTGACCTGAGCGGTGAGCGTGGTAAACGTGCC 398 29 100.0 32 ............................. AAAACGATACGAGCCAAAATCCTCGCCAGCAT 459 29 89.7 0 ............T............G..A | ========== ====== ====== ====== ============================= ================================= ================== 8 29 98.3 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : TGGCGTTCAGCGCTTGTAACCGCTGGGCTGAG # Right flank : ATGGTTGAGTAGAATCGCCAGGCCTGGTGGGTGCGCTTTGCTTACCCACCCTACATATGTTGTTAGGCCCGGCGGGTGCGCTTCGCTTACCCACCCTACATATAAACTGGCGGGCCTGCCCTTAACCGACCCACAAAAACTTCCCGTGCGTGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCAGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGAGCCCCCACCCATTTCTGCCTCTCCCCGCCGCGATAACCTGCTTCGACTGTGCTTCTTTTAAGCATCCGCTCCTGTGTTTTCCCGTTCTTCCCACAGCTATTTATTTCCGCGTTGCCAGCCGCTTTATTTTATTCTGTCGTTTAA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 361-26 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRNK01000008.1 Cronobacter malonaticus strain cro2834C2 contig8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 360 29 100.0 32 ............................. TTGTAGAGGCTGTTTATATGATGTACGGAAAT 299 29 100.0 32 ............................. AAAAATCAGTCGTATTCATTGATGAAGCCGGG 238 29 100.0 32 ............................. CAATGGGCGAACGTCGATTTTGAAAACAGGGT 177 29 100.0 32 ............................. GTCTTATAGTTCATCTCATTTTTTATTGAGAA 116 29 96.6 32 ..G.......................... CATTTCTTTATCCTTCTGGCGCTGCTGAGCTG 55 29 96.6 0 ..G.......................... | A [29] ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.9 32 CTATTCCCCGCGCGAGCGGGGATAAACCG # Left flank : GACGAAAGCTTCAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGGCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACCAGCCAGGTCAAACAGCTTAACGGAAAAAGCGGAGTGTTAAGCCAGGTCATTACGCTAGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTTATCACTTTTGTGTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAAGGCGAACTGCGCGAAAAGCTGGAACAAATCACAGGGTAAATTCTGCAAAAGTGGCGCTTGTGCCGACAATCATGGACTTATCACCGCTCAGGGTGAACAATCCGGTAGATGTTAACGGCCCACAAGCGTTGAAAAAAACGCCTTCAAAATCAACAGGCCAGCCGTTCTTTAACAAGATGGGATGTTGTAAAAATGTTGGTAGGATGTGGGTGGCGATAAAAGTTAATTAATTTCAGTAGGTTATATTTAGT # Right flank : GCCGCAGCACGCATGAACTGGTCTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 255-43 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRNK01000015.1 Cronobacter malonaticus strain cro2834C2 contig15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 254 29 100.0 32 ............................. CTGGCTTACAGGTTCGGCCGCAACCGGCGCGG 193 29 100.0 32 ............................. CTCGACGTTATCAACACTGACGGTTACTACTG 132 29 100.0 32 ............................. CGGCGGGCAACGTCCTCGCCGTTGGTTTCAGC 71 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAGCCCGCAACCGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGTATGCTGGTCGTCGTGACGGAAAGCGTCCCACCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGCCGCGTGCGTGAAATGATCTGGCATCAGATAAATAAGTTAGCGGAGGAGGGCAATGTGGTGATGGCGTGGGCTACGAATCATGAATCCGGCTTCGATTTCCAGACGTACGGCGTTAACCGTCGTATCCCGGTGGATTTGGATGGCCTGAGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTAAGCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGAATGTTGTTGCCCAAAAAAGCGTAATAAATACAGTTATATAGTTTTAGA # Right flank : GCTGGCGTTCAGCGCTTGTAACCGCTGGGCTGAGTGTTCCCCG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 27258-26741 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRNK01000015.1 Cronobacter malonaticus strain cro2834C2 contig15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 27257 29 100.0 30 ............................. GCTTTTCTTGAGTGGGTCGCCCTTCGCCTT 27198 29 100.0 32 ............................. GCTGGATTCTGAGTAGCGTACAGACTCGTAAT 27137 29 100.0 32 ............................. ATTTGGCCGGAACACTACTCTGCTGTTTGTGC 27076 29 100.0 32 ............................. GACGAAAAATGAGCGTCATTGAAGTTGCAAAA 27015 29 100.0 32 ............................. TTCGGTACGCCAGTGCCGATAATTCGGTCATT 26954 29 100.0 32 ............................. GCAGAAAACGCCTGGAGGCGCTGAAATGCGAA 26893 29 100.0 32 ............................. GTTTTTCCGTTGCCAACCTAACGCTATGGGGG 26832 29 100.0 33 ............................. TCGTCTGTATCCGTTTATCCGTGGCCACCTCAC 26770 29 82.8 0 ................TA.A......AA. | T [26747] ========== ====== ====== ====== ============================= ================================= ================== 9 29 98.1 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : AGCGGGGATAAACCGAATGCATGCCACTCTTCAACTCCTACGGCCA # Right flank : CCCGGGATTTCGCGCCTGGCACTCGCCGCTCCATTTCCCGCCACATTCTTCAGCAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGTTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGTGCGCTGTACGATGGCTTCAGTAAAGGGCTGCACGCGCATCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCACCCTGGCCGCCGTTTACCGCTCTTTTTCCGGGCGCTGAACAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATCAAGGCGCTCGGCTTTACGCCGGAGGATGTACGGCACATTGTACTGACGCATCTGGATTTCGATCACGCGGGCGGGCTGAGCGATTTCCCGCAGGCGCAGGTGCATCTGATGCAGCGGGAAATGACCGCCGCA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //