Array 1 205546-206959 **** Predicted by CRISPRDetect 2.4 *** >NC_020134.1 Thermoclostridium stercorarium subsp. stercorarium DSM 8532, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 205546 29 100.0 36 ............................. GCAGAAGAAGTCAGAAAACAGCTTCACGGGAACAGG 205611 29 100.0 39 ............................. GTATAACTGTATAGAAAATCAGGAATACGATTGCCGTTA 205679 29 100.0 37 ............................. GGGAAGCAGCCTTTATGCGGGTAACGCTGGAGGAAAC 205745 29 100.0 37 ............................. GGTTTTCATTTATTTTCAAATGATTCCTCGGCAAACC 205811 29 100.0 39 ............................. GTTAATTGAACACTTACATAAACGGTTACCCAAACCAGG 205879 29 100.0 35 ............................. GATAAATGTTGCCTGACGGAAGGGTTTTAGCGGGC 205943 29 100.0 37 ............................. GAGAAACTCCCCAAATATGAGAAAGTTGCATTGATAA 206009 29 100.0 38 ............................. GTAAAAATTCCCTCATAGAACTGACGTATTTCGTTTGA 206076 29 100.0 36 ............................. GCCGACAGATTGCGGCAGCGTTTGGCGTGAAGATGC 206141 29 100.0 36 ............................. GTGGCACAAAATGTTAATTACAGCAGGGCAATCTCA 206206 29 100.0 36 ............................. GGGCTTAAAAGGTGGTGAATAGGTTTGAATGGCAGG 206271 29 100.0 39 ............................. GGAATTTCGCAACTATCCTTGACGATATACCTGCATTGG 206339 29 100.0 38 ............................. GTTTGAATCGCGGTACAGAACAGTTTCTTTTCTGTCAT 206406 29 100.0 37 ............................. GATGATAGCATCGTCATAGTACCTTTCTGCTGTTGCG 206472 29 100.0 36 ............................. GTCTCGAATTCCTTATCCCTCGCCAGAGTTCCGGGA 206537 29 100.0 36 ............................. CTTGGTTAAATCCCTGATAATTTTACCAACTTTTGA 206602 29 100.0 35 ............................. CGGCATTGCCCGGCAACCTCGGGACTTACTTTTGC 206666 29 100.0 38 ............................. CACAGCCAAACCGGGAAACAACTTGCTCTCGGCAGGAA 206733 29 100.0 37 ............................. CGGTATCACCCCAGAAAATGAGAACGCTTCCCGGTGT 206799 29 100.0 37 ............................. CTCATTAGGCTCCATAGTCTCAAGTTCTTTCTGCATG 206865 29 100.0 37 ............................. CAGTCTTATGTAATAATATGGCTTTTCATTCTTATTT 206931 29 79.3 0 ....C....C...A......AG......G | ========== ====== ====== ====== ============================= ======================================= ================== 22 29 99.1 37 GTTTGAAGTTTACCTATAAGGAATTGAAA # Left flank : AGTTCAGAGTGGAAGGTAAGATGTGGCATCTGAGGACTTTGTGAAATTTTACTTGGTGGAAGAAATATTAATATGATATAGAAAATTATAGAATCTAAAGAGACAGCAGAAAATGAGGCAATAGATGGGGTTGATATCAAACTGCACAAAACAGTTTTTTAACTAATAAAAAGGTAGTTTTTAAGTTAAAACGTTATTGATAGTTATCACCTCCCTTTTTAGATACAAACAATTTAGGAAAAATATTACAGAAAATATTGTGAATAAACAAAATAAAATACAGCAATATATGTATTACTGCCTAAAAGGCAGCCGTTGCAATTTGATAGAATATATGGTAATATTTATCCTAAATAAATCTGTCGATGTCCAGTAGCTTAAAAACCACCGGGGATCGACAGATCTAAAAATCGGGCAATATCAACTATTTGCGGATTTTAATACTCAAAAATTTAAAAATTGTGATTTTATAAAAACGGCTTTTTATGCGGGTTTTACGG # Right flank : GCATACTTTCTTCGTTGGCACAGTATTTTGCATGGCTGTTTTAAGTCTACATATGAAGTGGGCCCTCGCAAAGAGTTCTCTATGCACACAGCTTTGACATATCTTTAGCTACCTAATTTGCTTCTACAAATCCCTTCAGGCCTATTCCGGATGAATATATTGTTCAGGGAATTTTCAACAGCGAAGTGTTGAGGTACCTGTTAAGGGAACGGGGTTATACCGGGAGCATCACACTTATTGAGGGCTGTGTGAAGTCACACCGGCCGGTGTTGACGGATCAAGCAACTTTGTGCTATTTTTTTGAAATGGAGGTAATTTTATATGAAAAAGATAGAAAAAATACTCATTGCGTTAGCCGTCATTTTTCTATTTTCTGCCTGTGAGGGAAGAAATGCAGATAATTTTATTGGTCTGTCGGAAATTGATGACTTAAGACAGGAAACGTCAACAAAAAAAGAAGCGGAAAGTAACAGTGAAGCATGCCCTTCCAATACTCCCAT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAAGTTTACCTATAAGGAATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 2 784774-786278 **** Predicted by CRISPRDetect 2.4 *** >NC_020134.1 Thermoclostridium stercorarium subsp. stercorarium DSM 8532, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================================================================================================================ ================== 784774 30 100.0 34 .............................. TCACCATCGCCTTTACTATACAAGTGTGTTCCTC 784838 30 100.0 36 .............................. ATTTCGGTGATGCACCCCACGAGCATAAAATGCTCG 784904 30 100.0 35 .............................. GTTAGGTTTCTTTTTAGATTCTATGATACCTTTTA 784969 30 100.0 36 .............................. TCAAAAATCTATATCACTTTTTACTATATCCCTTGT 785035 30 100.0 36 .............................. ATCGATAATGTCAATTCTACCTAAAGGGTAATAATC 785101 30 100.0 36 .............................. GTGTTTTTTAATATATTAAGTAATGTTTTATCATTT 785167 30 100.0 36 .............................. CGTTAATTAATTTTTCATTCTTCATGGTTTTAACCT 785233 30 100.0 35 .............................. TCCCCAACGCTCAGCAAGTTTAACCTCCGATGTGA 785298 30 100.0 36 .............................. TGAGCGCATCAGCGAACTCATGGAAGAAGAGCGCAG 785364 30 100.0 35 .............................. GCAGTAGTCCGTATGCTGGTAACATCCGGCCTCTC 785429 30 100.0 35 .............................. CATAAATAATTATTTAGAGGCGCCTCCTGAAAGGC 785494 30 100.0 36 .............................. TTACATGTTGCTCATACAGTGGAACAGGTACCGTAA 785560 30 100.0 33 .............................. CTTTAGCGTCAAACATTACATATATCCCTCTAC 785623 30 100.0 35 .............................. CGAACACCAGGACCACAGCAAAGCGGTGCGTGATG 785688 30 100.0 34 .............................. CCTCGACATTGGATATAGGCCCAAATTCACAAGA 785752 30 100.0 34 .............................. CCTTCTGAAAGGATAATAAAAATAGCCGTCGCAA 785816 30 100.0 35 .............................. ATGATCGTTGTGGAAAACGAATACTTCGTTTCCAC 785881 30 100.0 34 .............................. TTATTAAAAGCGTTTAATGCACCGTCTATTGTTA 785945 30 100.0 144 .............................. TATTTTCATTGTGGGAAACCTTCACATCGAAGGTATTTCATACAATTTATATTGAAAAGGATAAAACTAATGGTATAATTTAAATAAACGTTTTGTCTGTCGATGTCTAATGAGTGTTAAATTGACTTTATGAGGATTTTACGG 786119 30 83.3 35 A...GG...A.......G............ TATAGCTCTTTTAACTTTTTGACGCCCTTATTATC 786184 30 93.3 35 A...T......................... GAATATGTATAGCCCTTGTTGTTACCACACTCTTC 786249 30 76.7 0 .A......CC.T...G.G.......A.... | ========== ====== ====== ====== ============================== ================================================================================================================================================ ================== 22 30 97.9 40 GTTTAAAGTTTACCTATAAGGAATTGAAAC # Left flank : TTTTTGCAATAATCCTTTCTATAGCTTCAGGTGAAAATACGTTCTTCTCAGGATGTTCAATAACGAGGTTCTCTATATATCTTTATTGATAATCTTCATGACGCATTCTTTTGTTCTTTTTCTATTAGAGCATTCATACGTCACGTAAAAGTTTTATTTCTACCAGTGGACAAGCTGCAGTTTCCTCGCGCCAGTATAAACCCACAAAGCCGGCATTATGACAGGAACGGCAAGGGAAAAAAGTAACTGACAGCTCTAAAATTAAATCCTTCCTGTAGCGCTACCCCGGCTTCGTTCTGGGTTATTAATTTAATTTGCAAATTGGTAAAATATATGGTAATATTTATCAATAAATAATTCTGTCGATCTCCGGTAGCTTAAAAACCCCCGGGGATCGACAGATGTAAAAATCGAGCAATATCAGCTATTTGCGGATTTTAATACTTAAAAACATGAAAGTTATGATTTTATAAAAGCGGCTTTTTACGAGGGTTTTACGG # Right flank : CCCGTCAAGCCGTATGTTTCCACCTGTTGTGGCGCTTTTGTCTACCTATAAGGATTTTTCTCGTCTATAACCGAACGGATGTTTGTTATAATATCTATGGGTGAATTCTATGAAAGCTCTCATGCAACCCGTAGACATGATAAGCTGCACTTTAACGAAGTGGAGAGCTCCGCAGACTGTCAGGTTCATGGCAAAAGGTAAAGACGGTAAAAAGAACGAGAGTTTGAAGTCACGTTGAGTTGAATTCATGCAAAGGAGAAATGGCTGAAAATCATCGAGCATACGGTAACGGCTGTATGCAAACGGTATATTTGATTTTTAATTTTAAGAGACGGGATTTATGTGACATGAAAACATTTTACAGTATGAGTTTGGAGACATCTGAAAAATAAAAAAATTAAAGAATAAAAGATGATTTTATCTTTTTTTGTAGAAATAAAACACTAATTGTAGAAATAAAACATTAATAATATGTGCCAAAGGGGGATACTATGGATTTA # Questionable array : NO Score: 8.68 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:-0.47, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAAGTTTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 3 789140-789623 **** Predicted by CRISPRDetect 2.4 *** >NC_020134.1 Thermoclostridium stercorarium subsp. stercorarium DSM 8532, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 789140 30 100.0 33 .............................. GATAAAACAAGCTACCCCTGAAGTACTCCATCG 789203 30 100.0 35 .............................. CAAATATTCTAAATCCAATCGCAAAAATTGATATT 789268 30 100.0 35 .............................. CGGGGAAACATTAACGTTATTAAATCAAACACAAA 789333 30 100.0 35 .............................. TAGTGAAAGCAGAAAACGCAACTTAGGCAAAACGA 789398 30 100.0 36 .............................. GAAGCCGGCACTAAATATGTTTCCCATGTGTCAAAA 789464 30 100.0 35 .............................. CGTTTTTTGACGTAGATAGGTTGCTTCGGTCGCCC 789529 30 100.0 35 .............................. GTGTTGGTATAACCCCCTCCACACAACCACATCGC 789594 30 70.0 0 .................A.A.GG..CTTTT | ========== ====== ====== ====== ============================== ==================================== ================== 8 30 96.2 35 GTTTGAAGTTTACCTATGAGGAATTGAAAC # Left flank : AATGGTCCTTGGATTGAAAAAAGAAAAATGGGAGTGAAAGAGGAGTTGAAAGGGATGAGTAATCTCAAGCAAAAACTTACAAGCAGAAAGTTCTGGATAACCATTGCAACGGTTGTCTTTATTATCCTTTCTGAGGGATTAGGCTGAAATATTGACAATGATTTGTACTGGAAAATTGTAACAATGACGCTCGGCTATATTTTTGGTGAAGCAGCCGCCAACATTGCAAGAGCGAAGAGTACTGACAGCGCAAATGCATAAACATTATCTGTTACCTGCTTACCCCGGCTTCGGCCGGGGGTTTTTTATTTAATTTGCAAATTGGTAAAATATATGGTAATATTTATCAGTAAATAATTCTGTCGATGTCCGGTAACTTAAAAAACCCCGGGGATCGACAGATCTTAAAACTGAGCAATATTAGCTATTTGAGGATTTTAATGCTTAAAAACTTGAAAGTTATGATTTTATAAAAGTGGCTTTTTATCCGGTTTTTACGG # Right flank : TTACTACCTCCAAAGCATTGAGCCAATGGAGAGCTTCAGCACTTTTCAGGATAAATGAAAAAAAGTACAATGCAGTGAGAAACATGTGTAGGGTTCTATGGCCGGTTTCAGCTCTTTTTTTATAATTTAGTTAAATGCTGATGTATTTTTTTGGAACAGGAATTTTTTGTTATATTGAATTATTTCGCAGAAAGAGCTTGAACAAGCGATGAAAGACAAATGGCGGTTTGGCAATGAATAATACTGTTTTTTTAAAGAACAGAAAGATTTTTAAAACTTAAAAGAATTTGTATATTGAATTGAATATATGATATATAATGTAATTATGTATATTTAAAAGTTAAAAAGGGTGATAAAATGGCATCTGAAATATATTTAGCAGGCGGATGTTTTTGGGGAATGGAGAAATACCTCTCACTGATTAAGGGTGTTGAAGCGACGCAGGTGGGATACGCGAACGGAAAAACCCTGTTTCCCACTTATGAGGAAGTCTGCCATAA # Questionable array : NO Score: 9.07 # Score Detail : 1:0, 2:3, 3:3, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAAGTTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 4 1503611-1503317 **** Predicted by CRISPRDetect 2.4 *** >NC_020134.1 Thermoclostridium stercorarium subsp. stercorarium DSM 8532, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1503610 30 100.0 37 .............................. TGGTATTGAAAAGGACGGTATAAGTACAGACGCAATT 1503543 30 100.0 35 .............................. ATACCTCTGCTGCCTTCCTCATTTTCGGCGGTTCC 1503478 30 100.0 36 .............................. ACATAAATCTTACAGCCCAATACCACCGGGTGTTTT 1503412 30 100.0 36 .............................. GTTGTAGTCAGCTGTATGGCATTTCGTAATGGTTGG 1503346 30 90.0 0 A.....................G......C | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 98.0 36 CTTTTAATCTAACCATAATGGAATGTAAAT # Left flank : CTTGAATACAACAGAAAAGGTCTTCTGTCTGAGGACAAGACGTATAAAAAACCTGCATTCTATGTAATGAAGGAATTTTATGCTTCTATAAAAGATTAAACGAAAGGAACAGATATACAGCTACATTATTTTAACGTAGGGCAGCATTGAAGCGTGATTTTGTGGCTTGTACCGAATTTAGAGACATGCCGGAAAAAATCAGAATGGAACATATGGCTTTTGAATCCGGGCAGGCGCTGCAGACAGGTGCCTGCCTTTTTAAATTTTACGTTTTGTCTTAAATGAATTTGCAAATTTATTTATTGTTCATTAGAATATAGATTAAGAGGAATATCTACATAAAAACATCCGTATGGCTTAAAAATCGAGTTACTTTATTGTCTGTCGATCCTGAGTAACGGAAAATATACGGGGGATCGACAGATGTATCGGACTTTGAAAAATGAATAATCTATTTAAATTGTATAATACATAAGATGTAATATTTTTTTTAATCTTAA # Right flank : CCAACTTACGGGGAGTGGAAACGAAAGAACCTCTGCCGGAGGTTCTTTTTCATTTGTCATAAAAGCTGTGGTATAAAACATGGTGTAAAGGCAGGCGTGGCAATGTGCTTGCCTTTTTTATTCCTTTTGGTGAACAGGTAATATTTTTTAGGTTTATGAATAATCTTTTTTAACCGGCCATATATAAACAATGGAAAAAACTTTGGAGAAGTTTTATGATAGTTATCCGAAGAAGGACAATAGCAATATTTTTTGTGTCTTTGGTGTTATGCCTTATGATGTTTTTAACGGTAAACGGGAAAATTATAGAAGTCAGCGCCCCGGTAAGAGAAATACCAATTTACAGTGTTGAAAACAGCGAAGGAAAGGTATCGATTACCTTTGATTGTGCATGGGGGGCTCAGGATATTCCTGAAATACTCAGAATTCTAAAGGAGAAAAACGTAAAGGCCACTTTCTTTGTTGTCGGGGAATGGGCAAGGAGAAACCCTGAAGAAACA # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTAATCTAACCATAATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-88.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 5 1789136-1784944 **** Predicted by CRISPRDetect 2.4 *** >NC_020134.1 Thermoclostridium stercorarium subsp. stercorarium DSM 8532, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================================== ================== 1789135 30 100.0 36 .............................. TCAGAAAATTATTGGGAAACGCATTCACGCGAAAAT 1789069 30 100.0 35 .............................. ATTGCGAAAGTGACAGGACAAAAGTATTTTGACCA 1789004 30 100.0 37 .............................. CTTTCTCTAAAAGAGTTTTTGGAAAACGTAATACAAC 1788937 30 100.0 35 .............................. CAGAAGTAGACCATATAATACCGATAAGGGTTAGA 1788872 30 100.0 37 .............................. TCTTCCAGACCTTCTGTGCCTCTTCATCCAGCCATGA 1788805 30 100.0 36 .............................. GTAAATGTTTCCAGTCGGGAATGTTCCACCGGGTGC 1788739 30 100.0 35 .............................. TCAGAAAACACGGCGCATACATGACACCGGAAACA 1788674 30 100.0 37 .............................. TTTTACATAGTCCACCGGTTCCTCAAAAGGTGATAAC 1788607 30 100.0 36 .............................. GGCCCTCGTTTGTCGTATGTATAGCGCTCAGCACTG 1788541 30 100.0 36 .............................. CTATCATGAAACATTACATCTATGTTTGGAGCTATT 1788475 30 100.0 35 .............................. ATGCCGAATATGAGGCACTCGTGGCGAAACTCGGC 1788410 30 100.0 37 .............................. ATGCTTCCTGTTTGGTCATGTCATGCCTTCCTCCTTC 1788343 30 100.0 36 .............................. ATAAAACCGGCAAGGTTGTAATGCATATCAGCTCAC 1788277 30 100.0 35 .............................. TTTCAAAAATTTGACCTCGGATGTGTGTTTGGGTG 1788212 30 100.0 35 .............................. TAAACTCCTTACGCGGTACGGCTAAGGCTTTCCAT 1788147 30 100.0 36 .............................. AAAAGTTGCAAAGAAAAAACAAGAAAAAGTTGAAGC 1788081 30 100.0 37 .............................. TCAGCTTTAGCTATCACAAGCTGCAGTGCAGGGTTGC 1788014 30 100.0 36 .............................. GTAGATTATGTAAGATGGGTAAAGGCAGAAAAAGTA 1787948 30 100.0 35 .............................. TTTTGCAGATAGTAAACCGGGCGAACAAGCGCAGG 1787883 30 100.0 36 .............................. ACAATGTGAGTATTCCAGTCAGCATCGTTCATAATG 1787817 30 100.0 36 .............................. TCACTCAGCCAGTCGATGTCTTGAGCCTCCTGCTCC 1787751 30 100.0 37 .............................. ATGATAGAAACATATTTCGTCATGATACGAACGCTTG 1787684 30 100.0 36 .............................. TTTTTTTGATGAAATGGTTACGAATGCAACCAAATC 1787618 30 100.0 35 .............................. TACAATGCAACTCATTTTATGTTAGAAAGAGCTGC 1787553 30 100.0 35 .............................. TCGATTCTTTTCGATGGCGAGGAAACGGCAAGTGG 1787488 30 100.0 39 .............................. CTTGTTTTTATGCGGGTAAATTGAAAACCGCTGTCATCC 1787419 30 100.0 36 .............................. GATATAAAGTGCTGACGCCGATATGAACCCGACAAG 1787353 30 100.0 35 .............................. TGTTTTGGTACTTTTCGATGCAAGCCTCAAGCACA 1787288 30 100.0 34 .............................. CGCCAAATGGCTGATGAACAAAGCCACCTTCTAC 1787224 30 100.0 36 .............................. CCTGGCGCTCGGCCTCCGCCTGCGCCTCGAAGTAGC 1787158 30 100.0 35 .............................. TGAAGGGGTGTAGGGTACGTAACAAAGCACCAGTC 1787093 30 100.0 36 .............................. ACAGCTGCAACGCCCCATGCAAAGGCGTTTGATTCA 1787027 30 100.0 38 .............................. TCAGGAATAGGATTCAGAACCCGTTCCTCAAAAACAGC 1786959 30 100.0 37 .............................. TTCGCTGGCCTCGTCGTATTCATTGTAGGTTCTTACC 1786892 30 100.0 37 .............................. TGTACTCCAGCAAAAATAAAAAGCAGGGCATAAAAGA 1786825 30 100.0 35 .............................. TAACCGTCTATGTTAAGGCCCATTTCGGCTGGAAC 1786760 30 100.0 35 .............................. GTTTTAATTATGATTATGTGTTTTCTTTACTTATA 1786695 30 100.0 36 .............................. CAAGATTTTTGTTCAGGGTAGAAAAAGACCTGATCA 1786629 30 100.0 36 .............................. TATCTTTGACCCATCTTTCCCATATACCCTTATAAT 1786563 30 100.0 35 .............................. ATGGTAAATCCATAGGGATATTACCTGCATCAGTC 1786498 30 100.0 36 .............................. TACCGAGGTAATTGACGCTGTGTTTGGGAAGATACC 1786432 30 100.0 36 .............................. ATTCTTGTGGCTAATTTAGGGGATAGAATAGCAATA 1786366 30 100.0 36 .............................. TTAGGGTACGTAACGAAACACCATTTTGCGTTCTTC 1786300 30 100.0 34 .............................. CCTGTACCGCCTTTATCTGAGATGCACCCTACAA 1786236 30 100.0 34 .............................. ATATAATAGAGGGTGTCAGCAAGGCTGGAAAAGC 1786172 30 100.0 39 .............................. GAGCTCAACTGGTCAGAATGAATCAAAGGGGCCTGCGTT 1786103 30 100.0 36 .............................. ACTCATTGTCTTCCCGGATCACGGTATAAAGGCATA 1786037 30 100.0 35 .............................. TCCTTCTTTTTTTCTTTTCTTCAACCTCAATTCCT 1785972 30 100.0 35 .............................. CTGGACAGCACGAGGATGGAGATATGGGTTGACGA 1785907 30 100.0 36 .............................. GTAGGTGATAGATTTTATAACATCCAAACAGGTTGG 1785841 30 100.0 35 .............................. TGATTTAAAGTATGAGCATGGAGATGAATACTATA 1785776 30 100.0 37 .............................. TTAGTATCTTTGTAAAAATCGGCCAGAACCGTTCCAC 1785709 30 100.0 36 .............................. TACATCTCCCAGGAGTTTAATTTCAGACTTAAAAAA 1785643 30 100.0 35 .............................. TTAAGTCAGCTCATATTGCAGATGCGGCAATTCAG 1785578 30 100.0 54 .............................. GGTATAGCATACATTCACTACATAATATTAATTATGTAAGGAATAATAGAGTAA 1785494 30 100.0 36 .............................. TTTTTAGTATTTTGAAAGGGGTAGGGGGGGGAAACT 1785428 30 100.0 35 .............................. CGGAAGAAGTGAAAAAACAGCTTCATGGGAATAGG 1785363 30 100.0 36 .............................. AATTGCATTTTAGGGAAGAGTATCGCGCGGTATTTC 1785297 30 100.0 35 .............................. CCTGTACCGCCTTTATCTGAAAAGCTCCCTACGAG 1785232 30 100.0 35 .............................. ATTATCATTCTTTATTTTTTCCTCTTCATCGCCGG 1785167 30 100.0 34 .............................. CTTAATGGGCCTTGGGAGTGGGTCTCGGGCCTTA 1785103 30 100.0 35 .............................. AAGCTGAAGAAGCTATTAAGGCAGCCGGGTTACAT 1785038 30 96.7 35 ......................G....... TCTTTGGTGGGATTAAGCTTAAAAATTCTAATTAA 1784973 29 80.0 0 ..........TC.....G...T.-.....A | G [1784957] ========== ====== ====== ====== ============================== ====================================================== ================== 64 30 99.6 36 CTTTGAATCTAACCATATTGGAATGTAAAT # Left flank : TTCAAAGAATGTAAAAAATACCTTGTACATGTTCAAAATTCAGTATTTGAGGGTGAATTATCGGAATCTCAGCTTTTTAAATTGGAAATGTCTTTAAAAAAACTTTTGAGAAAAGACAAAGATTCATTAATTGTATTCAAAACCAGGAACGAGAAATGGCTGGATAAAGAGTTTTGGGGAAAAGAAGATAATGCAACTTCAAATTTCTTATGACTTTTGTTTTTTCTCGTGAGAAAATGAGAAGTCTTAATGGCATCTACAGCAAAACTCGTGAGGATACCACCGTAGTTCTGAGTTTGACGAAGAAATAATTTCAGACTTGATCTGTCGATCATGAGTAGCATAAAATATATAGGGGATCGACAGACGTATCGGACTTTGAAAAATGAATAATTTTAAAAAATTTATATAGCTGTATGTAATACATATTTTTTTAACCTTATATCATAGACAGAAACTGTACTTAAAAGATATGAAATTCAAGTATTATAATTAATCGC # Right flank : CATTTCGTTTTTAAGCCTCCCAAAGAACCCTTCACAAGCGGAATTATCTGCAGTACACCCTTTTTTGGACATTGACCTGATAAATCCTGCATCTTCCATCCTGGAAATCCAACCAGGCCATCTGTAGTGGCTACCCTCAGAGTGTACGATTGGATGCTCTGTATCTGAAAGACTGCTTATGGCTCCATCCAACATCGTATTGACTATCTCTGCATCCGGGCTGGTTCCTATTGCCCAGCAACGGCAGCTGCAGTCTCGTTTGTACAACTCTACTGCTTTCATTCTGTCCTCATATGAATACACATGGGGGCTCCTGCTCTATTTTAAGTCCAGGTTTTTGTCCGCACCCCCTTTGGGTAAAAATATTCCAGCGTTGACATTTGTTACACATTTTTCTACGTATTTAAGACTATAACGTAAATTCTCTGCAGGGTAGGGTAAATTACTGAACGTACATACTTTGAATTTAACCATAATGGAACTGTTTATGCCAATATTGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTGAATCTAACCATATTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.20,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 6 2320335-2320107 **** Predicted by CRISPRDetect 2.4 *** >NC_020134.1 Thermoclostridium stercorarium subsp. stercorarium DSM 8532, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2320334 30 100.0 35 .............................. CAGATCAACAGCTGTTTTGGCTTCTTCTTTTGATA 2320269 30 100.0 37 .............................. TTCACCGCGTGAAAACACGTATTTTAATTCCGCAACT 2320202 30 96.7 36 ....G......................... ATTACAACTTCATAAATATTCCTGTTATCAACTGAC 2320136 30 96.7 0 ......................G....... | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 98.3 36 GTTTAAAGTTTACCTATAAGGAATTGAAAC # Left flank : TCCTCATCATTTGCTGGAACCGGCTTGTAGTAAAGGCTTGTACGATTTATGCTCAACAGTTCGGCTTGCTTGGTTATACTGAGTTTCTTCTCTTCTCTGTCAATCATCTTCATGCGGTCTTCACGGGACTTAGAGTCGGCCAGATTTTTTTTTAAGCCAGTTAACCTCATATGAGAGTTGACCAATTTGCTTAAGCAGTTCGTCCTTCTCCTTTTCATACGCCTGCTTGACTTTCTCTACTTCATCGGTTTCCTTGCTGAATACCCTGCCTGCATTGCTTATGAATTCTGCCTTCCAGCGGCTTAGCTGATTCGGATGTATTTCATATTCGGCAGCAATCTCATTCAGCGTTTTTTCTTCCCTTAAGACCTCAATCACTATTTTTGCTTTTTCTTCCGGTGTAAAATTTCTTCTCTTTTCCATAGTTCCATACTAACTTATTTTGGCCGTTTTGTCTGTCTTAATTTCTGGTATCATTATATCCCGGCTTCCAATCTGAG # Right flank : ATAAATTACTGTCGATTTTATTTTCAAGCCATTCTGTGTAGTTATGAAGAAGTCGCGTACCGTAAATAATAGCGAATATGATTATTCTTTTGAGGTTTGTCGGAGCCTTTATTTATTCTTGAAAACAATAAAAGTAGTAGTATAATTTACATAAAAGGTTTATAATTAATCTGTCGACGTCCGGCAGTGTAAAAATCCCTGAGGAGCGCCAGATGTAAAAATTGAGAATTATCAGCTCTTTGCGGATTTTAATGAATAGCTGCGGGTTTTTAAAAAGGTTTTTTTGTGCGTATTTCACTGGTTTGAAGTTTAGCTGGGAAGGGATTAGAGAAATTTACCTACAAGGAATTGTAATATCCGTGGCATATTCATTGTTACTACTCCTATACTGTTTAAAGCCTACCTATAAGGAATTGAAACAAGGCAAAATCGCTGCCGCCCTCAAACGTAATATACTGTCTTAAGCTTAACTATAAGGAATTGAAACTTTCGTTTGTACA # Questionable array : NO Score: 8.77 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAAGTTTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 7 2322769-2321817 **** Predicted by CRISPRDetect 2.4 *** >NC_020134.1 Thermoclostridium stercorarium subsp. stercorarium DSM 8532, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2322768 30 100.0 36 .............................. AAATTATATCACAGATGGACAAGCTTGAAAACGAAG 2322702 30 100.0 37 .............................. TATTTTATTGCGCCTTCTTCAAGTGATGCGACTTTTT 2322635 30 100.0 36 .............................. ATTTTTATGCTATACTATACAATATATTGCTTAATG 2322569 30 100.0 36 .............................. AAAATTTGTAAACGTACCCGGTATAGCATACATTCA 2322503 30 100.0 35 .............................. TTTTATTTGTGAGGTGATTATATGAGTGCTACTGC 2322438 30 100.0 35 .............................. AACTCCAAAGGTTCATTGCACCGTCACCATACTTA 2322373 30 100.0 36 .............................. TTGGAGATTTCAAACTCCCGAAGAAATAGACTTTGT 2322307 30 100.0 36 .............................. TTTGACAAGGCAAAGGTGATTGTGGCGCTGGATACC 2322241 30 100.0 36 .............................. GATTCTCGGGCGTTTAGGTATGCCTCATACGGCATC 2322175 30 100.0 35 .............................. GTGGTAAATCCATAGGAATATTACCTGCATCAGTC 2322110 30 100.0 36 .............................. CCTTTATCTGAGATGTACCCTACGAGCATAAAATGC 2322044 30 100.0 36 .............................. TTCTAAGCGGTCATGATAATGACCGCCGTCCACTCT 2321978 30 100.0 37 .............................. CAGTTGTTGCATTCTAAACGCACTTCATAATCGTATC 2321911 30 100.0 35 .............................. GAGTAAATGAATGAAAGCTGCACAAATGATGGTTG 2321846 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 15 30 100.0 36 GTTTGAAGTTTACCTATAAGGAATTGAAAC # Left flank : ATAATTTCAATTTATTTTTGAGTAAACAGCTTAGCGTTATTAATTGCTCTTAGCTATATTTTTACTAAAATTAATTATATGCACGCTTTCGAGTATTTTGCAATAAATATGCAGAATTCCGGATACGGTTTTAACCCACAGAATAAGACCATCTTGTAAAACGGGTATGTTTTAACATGCGTCATAAGTTTATTATACATGTGTATTATTAATGATTCCGAGCATTGGTATACTGGACAGGCTATTGCAAAGGATGAAGTAACTAAATCCTCCCTGTTGCGCTACTCTCAGCTCCAGCCGGGGTTTTTTATTTAGTTTGCAAATTGATAAAATATATGGTAATATTTATCATAAATAATCTGTCGATGTCCAGTAGCTCAAAAATACCCGGGGATCGACAGATCTAAAAATTGAGCAATATCAGCTATTTGCGGATTTTAATGCTTGAAAATTTAAAAATTGTGATTTTATAAAAGTGGCTTTTTATGCGGGTTTTACGG # Right flank : GTGAAGAAGAATTCTATAATGCCCCCACTTGTCAAGACAATTTTTTAGCTTTTCTAAGTTAGGTTCTCCTTTCTTTATTTTTGTATAATTATAACATTTATGCATTCTGTTGGAGGATGTCAAGGGCGAGCGTAAGCGAGTTCATCTTGGCCCTTGACATCCAATGCGCATACATCCTTTTGCTTTCCGGTCTGTTATGACAGACCGGCTGCCTTCCGGCGAGGACGGGGTTTGGGGCAGAGCCCCAAGGTTTTATACGACTGCCGGAAGCTGCTTACAACCCCCGAAGTAATACTCTGCCGGTGTTTTGTAATCCAACGACTGGTGAGGTCTCCGGTTGTTATAATACTCCACATATTCCCTTGTAATCTGCCGGAGCTGATGTCCTGTTTCGCAATCTTCAAGATAAAGCTTTTCCCATTTGTAGGATCGGAAGAAACGCTCTATCCGTTGGTTATCCAATGCTCTTCCTTTGCCATCCATAGATATTTTGATATTGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAAGTTTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA //