Array 1 33543-33336 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCZB01000028.1 Neokomagataea thailandica NBRC 106555, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ================================= ================== 33542 27 100.0 33 ........................... GCTGACCTCAATCGAACAACAACACAGGCCGAT 33482 27 100.0 33 ........................... GTATCGAAATAATTCTGGCCATCCCAGCACTTG 33422 27 100.0 33 ........................... TCTCCTCATTGCGTTATCGCTATCCTGAACTGG 33362 27 92.6 0 ......................GA... | ========== ====== ====== ====== =========================== ================================= ================== 4 27 98.2 33 CTCCCCGCCGGGTAGGCGGCTGAGAGA # Left flank : CGGCTGAGAGAACCTAGTCCGACTAGGCGATGAACGGCTGAGC # Right flank : TCTCAGCATGGACGGTCACGGTTTTGTTCCGAACCTTTAAGACCAAAGATGGTTGAAAAGGAGAATTGGAATAGGGCGAGTTTACAAGACCGAGTTCAGACACGAGGCGGTGCGTTTAGCGCTGAGTAGCGATCTATCGCGTGAGCATATCGCTCAAGATTTAGGGGGTGGGTCTTCGACATTAAAAACGTGGGGCCGTGATGCGCAGAAGCACGATACTGTGGTTTCCAATACCGTGAATCGTGCTGCCTTATTAGGTGAGAATGATAGAGAATGCCGTAACAAAACGCTTCTTTAAAACACTGAAGGCCGAATTGATGTGGCGGCAATCATAGAGCCGTCGACAAGACGACCAAACAGGCCCATCACAGATTACATTCATCATTTCTACCACACGCAGAGGCTCCATTCCGTTTTGCAATGGAACAGCCCTCTAGAGCATCAGCGCAAGGCCACTTAAGACACCATCAAGGAGCCAAAACAAAACCGTGATACGTCTC # Questionable array : NO Score: 2.77 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCCCGCCGGGTAGGCGGCTGAGAGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.80,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 1 1265-36 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCZB01000029.1 Neokomagataea thailandica NBRC 106555, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1264 28 100.0 32 ............................ TCCAGCAATTGGAGCAATCGCCCCAGCAATAA 1204 28 100.0 32 ............................ AATAGAGCGTCATTGCATCCATAAGGCGTAAT 1144 28 100.0 32 ............................ CTCGGCGATGAGACACGCTTCCCTAGACTGAC 1084 28 100.0 32 ............................ TCCAGCAAGCCTCAGGAACCTTCTGAAGGGTA 1024 28 100.0 32 ............................ TACCGTTGACGGTACAAATGTTGCACTTCTGT 964 28 100.0 32 ............................ ACGGGTGGATCGAATAACCAACTCCGAGTATG 904 28 100.0 32 ............................ GGAAATCAGGGTGCGCGTGGGACACAGATATG 844 28 100.0 32 ............................ AGTCTGCTCCAGTCGCCCCCGGGGTAGTTATG 784 28 100.0 32 ............................ TGACACCATAAAGTTTTCACCAGAGAATGGTA 724 28 100.0 32 ............................ TTGTCATTGCAGTCAATGTTGCTGCTTGGCAG 664 28 100.0 32 ............................ ATCTTCCACAAGATTTTTTGGAGCAGATATGG 604 28 100.0 32 ............................ AGCTCACTCATCGCGGGATCTTCCGACAATGC 544 28 100.0 32 ............................ CGTTCGGTAATTTCTTATACCAATGCTTAATC 484 28 100.0 33 ............................ CCATACACACAAGGCATGGGGTCAACGCTGGAT 423 28 100.0 32 ............................ AGTGCAGCGCATGAACGACGTGAGAACATATA 363 28 100.0 32 ............................ TGCGGGTCGATCATCGTGTTGACGATGGCCGG 303 28 100.0 32 ............................ TCCACATGGCTCTCACGTGGGTGCTTCCCGCC 243 28 100.0 32 ............................ TATGCGGATGCGCTGGCGCAGCCGGGGTTTAA 183 28 100.0 32 ............................ CTGATGGGGTGCTACCTGCTCACCTTGCATCA 123 28 100.0 32 ............................ TCATGACCGAAACCACCTGAAAGGCTAAGAGG 63 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 21 28 100.0 32 GCTCCCCGCCGGGTAGGCGGCTGAGAGA # Left flank : ACGATGGAATACCAAGGTCTCTCAGATGCGCAAATTTCGCAGAACCAACCAGCGCGAAATCCGCTTTGTGATGAGAGGCGAAACGTTGTCCGATGCTGTCTGGTATGTGGATATGGCCCCGGGCACAAGAAACAGCATCTTGCGAGAGGCTGGAGACAGCATTCGCTCTACCCATTTACGTCTGCCTGAAGCGGTTTTGTCGGATCATAACGTCGAACGGGCTTGGCAAGCCTATACCCAAAACAGACGAGACATTTCGTCCGTTGAACTTGCATCCCTTATGAGCGTGAACCTTCCCGTCAAGGATGATGAAACGCGTGTGGATGTCACCATGGATGATATGATCGGATTAGTTCGAGGCACTTTTGAGGATCAATAATCTAGACCTGAGAAAAGTATTTTATTACAGTGCATTAAGTCGGGTCTTTGAAAAGATGGTGTGATAGCCCTAAAATTGGTAGTGCGCTGAGATAAATAGCTTTTACATGTGCGAAGTTACT # Right flank : ATACCGGAAACCCTAAGCATCCCTAAGCATCCCGCT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTCCCCGCCGGGTAGGCGGCTGAGAGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.20,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 1 2245-1150 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCZB01000061.1 Neokomagataea thailandica NBRC 106555, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2244 28 100.0 32 ............................ CAGTTTTTCCGTGCTGTATCGTGGCTAAAACC 2184 28 100.0 18 ............................ GGAGGTTATACTTGATAT Deletion [2139] 2138 28 100.0 32 ............................ AAGTGCTGAATATCTGCCCTGGGCAACAGGTC 2078 28 100.0 32 ............................ TTTGATGCGCGACCGATTGGCACCTCAAAAGC 2018 28 100.0 32 ............................ AAAAAGGATAAGACAGCGTTCAAAAACGCGAT 1958 28 100.0 33 ............................ AAAACGAAAACGCCATGAGGGGCCTTAAAAAAT 1897 28 100.0 32 ............................ AATAGCGGTATTCCGGCCATCGTCAACACGAT 1837 28 100.0 32 ............................ TGATTCAGATGAATGTTTGGATCGCCAAGAAG 1777 28 100.0 32 ............................ CATGAAAATGCTGTTTCGCACAACTGAAAGTT 1717 28 100.0 32 ............................ CCCCTACCCAGTAGAGAGGAAGAAAAAAAATA 1657 28 100.0 32 ............................ AAGCTTTAGGAGACGCACCGACAAAGCGCGAA 1597 28 100.0 32 ............................ AGTTGGACGATATGCGGCTGTGATCGGTCATC 1537 28 100.0 32 ............................ CGACGCCATTTTCTCCAAAATTCGTCGATATT 1477 28 100.0 32 ............................ AGTAGCAGCGGCCCTCTTCATCTTCCAATAGA 1417 28 100.0 32 ............................ TCTCTTATATGCGTATGATGCGCGTTGCGTCA 1357 28 100.0 32 ............................ TCTTTGGCCGGCGCGTTTGGATCGTGCGGCCG 1297 28 100.0 32 ............................ TAAAAGAGGCAACAATAACCCCGGCACAATGG 1237 28 100.0 32 ............................ ATTGCTCTATTGTGTTTCCTCAGTCTGCCCTT 1177 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 19 28 100.0 31 GCTCCCCGCCGGGTAGGCGGCTGAGAGA # Left flank : CCCAAGAAACAGCATCTTGCGAGAGGCTGGAGACAGCATTCGCTCTACCCATTTACGTCTGCCTGAAGCGGTTTTGTCGGATCATAACGTCGAACGGGCTTGGCAAGCCTATACCCAAAACAGACGAGACATTTCGTCCGTTGAACTTGCATCCCTTATGAGCGTGAACCTTCCCGTCAAGGATGATGAAACGCGTGTGGATGTCACCATGGATGATATGATCGGATTAGTTCGAGGCACTTTTGAGGATCAATAATCTAGACCTGAGAAAATCATTTGATTACAGTGCATTAAGTCGGGTCTTTGAAAAGATGGTATGATAGCCCTAGAATGGCTAGTGCGCTGAAATAAATGATTTTTGTTTGTGCAAAGTTAC # Right flank : CGTATGTTGCTTCGCTACAGTCTAAAATTGGGCCCTGTTGCAAAGCGAGTTTAAGAACGCGTGTATCCTCATTTAGACAACCAATCCTCTGAGCGAAGACCATGTACTCTTGTAAACTCACGAAGGTTTCCGGTTACAACGATGAGCCCTTTGCTACGAGCATGGCCAGCGATCATGAGATCATACGGCCCAATGACACAGCCCCTGTTTTCTAAATCAGCCCGAATTTCTGCCGTGTGGGCAGCAGCATCGTCATCAAAAGGCAAAACATCCAACCGAGAGGCGAAAAGCTCGACTTGGCGGCGGTGCCTTACGGGATCCTGAGACTTCTCTGCACCGTAAAGGAGTTCATACAATACGACGTCAGAGATGCAGAGCGCTTCAGCGTTATCGTTGAAACGCTCTCTCAACCCTTGTGGTCGATCACGCAGCACACGAATACAGAAATTCGTATCAAGTAAGAAGCGGAGCATCAGAAGCTTTCTCGCTCCTGCATCTCG # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTCCCCGCCGGGTAGGCGGCTGAGAGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.20,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA //