Array 1 6366-5339 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXDZ01000002.1 Listeria monocytogenes strain CFSAN004330 D2E20_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6365 36 100.0 30 .................................... ACAGCTTCCTTTCTGTTATATTTTTCACAA 6299 36 100.0 30 .................................... CATAGGTAGAATAACCATCAACTCCGCTAG 6233 36 100.0 30 .................................... AATAGGATATTTATGTTGGCGCATATCTAA 6167 36 100.0 30 .................................... TGCCAATAGTGGTGCCCACTCAATCAAAAC 6101 36 100.0 30 .................................... AAAAATGGGGCTTACCGCAAAGTCGTTATT 6035 36 100.0 30 .................................... ATTACCAAAAAAGTACCCACCGATTTTGGC 5969 36 100.0 30 .................................... CTGGAAAATCAAACAGTTAGACGACGTTTG 5903 36 100.0 30 .................................... TCCGACAACATGCGAGGAACAACTAGAACA 5837 36 100.0 30 .................................... GATTCTTTCCGAGATTCCACGTGTAGAGGA 5771 36 100.0 30 .................................... AACATAGGTAGAATATTTACGCATCTCCTG 5705 36 100.0 30 .................................... CGAGCGGCGTTGGTATTGACCGTAAAGCGC 5639 36 100.0 30 .................................... ACTTTATCAGTCAGACACGCCGAACGAGCT 5573 36 100.0 30 .................................... TTAACAAAAAAACCTGTTTGTCCAGTTGTC 5507 36 100.0 30 .................................... TCCGACAAGGAAGATCCGTTCCCGACTTTG 5441 36 100.0 28 .................................... TAATATTCTCCCCCCATCGCTAACAGGG 5377 36 86.1 0 .............A.....C.....A.A.......G | C,A,T [5342,5345,5350] ========== ====== ====== ====== ==================================== ============================== ================== 16 36 99.1 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 66524-70064 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXDZ01000001.1 Listeria monocytogenes strain CFSAN004330 D2E20_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================== ================== 66524 29 100.0 36 ............................. ATTGAAGCAAGACAGCGACGTGGTTTCTGCAACATT 66589 29 100.0 35 ............................. GTCAAATTGCTCATTAAAATAAAGAGGGTTAGTAA 66653 29 100.0 37 ............................. TGTCATTTCTCCTTCCTTAGAGTTTCTTTAAGCTGCA 66719 29 100.0 37 ............................. CTAACCAGAAAAAGAAATTAGCAAGACCATTTAACGT 66785 29 100.0 37 ............................. CAGGTACTCTATTCTTTTTTGCTTGTTCATAATTCTT 66851 29 100.0 36 ............................. CGCATATATTCGGCTGAATGTGTGAACCACCCAAAG 66916 29 100.0 36 ............................. AGGCGCAGGGCAATTTTTACCAGTGACGTCATAATG 66981 29 100.0 36 ............................. CTTTATCATTTACAGAAGCGTCTAAGCCCAGCTTGT 67046 29 100.0 36 ............................. ATTTAATCACTCCTTTCTATATATTTTCATAATTCC 67111 29 100.0 36 ............................. TACCATGGAAGAAATGGCAATATCACCGCGTTCTTC 67176 29 100.0 34 ............................. AAGTTATTCACTCCTATCTTTCGATTCCTAAAAA 67239 29 100.0 36 ............................. ACACAAAAGATGATTTACATAACCAAGAAATCCAGC 67304 29 100.0 36 ............................. TTATTCATTGCTGTTTTAGGCGTATTTTCTTTTTTT 67369 29 100.0 34 ............................. AAAAATATCCTTGTTAAATTGACGATTTAATGAG 67432 29 100.0 37 ............................. TTATAAATCCTCCTTCATTCAATTAGTTTACAATTTC 67498 29 100.0 42 ............................. TGTTGTTGTGATAAAGTCATTCCTGCTTGACTTACTGTAGTT 67569 29 100.0 36 ............................. CAATAAACGGCTCTGTATAATAAGCTGTTAAAACAC 67634 29 100.0 37 ............................. TTCGTATTCGTAAATATCATTAACTCCAAAAGCGAGC 67700 29 100.0 34 ............................. TCAAATGCTTTTATCGTATATGATTCTACATTAG 67763 29 100.0 37 ............................. AGTAGAGCGTAGTGCCGATGTTCCATAGAAGTAACCA 67829 29 100.0 36 ............................. GTTTGTTGTAACAGGCACAGCGAGCGAAACGGAAAT 67894 29 100.0 33 ............................. AAAAAAGTAAGGAATGGTACGAGCAAGAATTAA 67956 29 100.0 36 ............................. CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT 68021 29 100.0 34 ............................. TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG 68084 29 100.0 37 ............................. AAGTCTACTTGGATTTAGCTCTACACCTGCAACATGA 68150 29 100.0 34 ............................. AGAAAAAAAACATCTTTTCAATTTGTTGTTTTGC 68213 29 100.0 37 ............................. ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC 68279 29 100.0 35 ............................. TCGAATCAAATAATTTTAAAAGCTAAGCAAACAAA 68343 29 100.0 36 ............................. CTCATAAGGATTTCGAGGCGGGTTAAACGACATGTA 68408 29 100.0 35 ............................. GCTTTTTTCAACAATTTTATCACCAGATGTCATTA 68472 29 100.0 36 ............................. TGAGCAGTGTCACCTGTTTCCGTATCTGCTTTTTTC 68537 29 100.0 37 ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 68603 29 100.0 36 ............................. GTCAATAACTAGACGAGCTAACGTTTGTCGCTGTTT 68668 29 100.0 35 ............................. TGTTATCTCCTGTGATGTAAAATAACCCTTCTATC 68732 29 100.0 37 ............................. CTTGTTAAGTCCCCACTTCCATTAAAATCGTAATTGT 68798 29 100.0 37 ............................. TAATACAAAATATTCATAACTCCTACATCATTATATA 68864 29 100.0 36 ............................. TTGCAAACCTAACTTATCTTTGTTTTTTTGCTTTTC 68929 29 100.0 37 ............................. TTGGATTTTATTAAATACAGAGTCACGGATTGTATTT 68995 29 100.0 35 ............................. TTAGAGATAACGTTAGCATCCGTGATAACTTGGTT 69059 29 100.0 34 ............................. ATAAATTATCCGTATGTTCTTGAATTGTTTCTTC 69122 29 100.0 36 ............................. CTGGTTTAAAAAAGAGTTTTTAGATCGCTTAGAAGA 69187 29 100.0 34 ............................. GTGCTTTTCGAACATCTTTTTCTATATCTACATG 69250 29 100.0 36 ............................. TCAGTTTGGTTCCAGCAGACATTACAATTCCTTGTA 69315 29 100.0 37 ............................. ATATTACTATTTGAAAAAGTGCGATCTGTCACAATTA 69381 29 100.0 35 ............................. TACGATAATACGAGTTTTTCAATAGGCAGACCTCC 69445 29 100.0 37 ............................. TTAGAAGCGGGACAGAAAAGAACTTTTCAAGATGTGT 69511 29 100.0 36 ............................. GGTGAATTCGTCACAAGTATTAAGTCAATTACAGCG 69576 29 100.0 37 ............................. GTTATTAAAGGCTATATAGACAAGGTCTTAAGCGAAC 69642 29 100.0 36 ............................. AGAAATATGGGAAGCTGGACCAGAAAACTTGGCAAG 69707 29 100.0 35 ............................. TTTATTGTCGATAAGCTCATGACAGATGAATCACT 69771 29 100.0 36 ............................. AAAGGTAAAAATATTCTTGCTGTGGCAGGTCCTGAT 69836 29 100.0 38 ............................. CTCTTCCACTTTTGCTGCTTTTTTCGCATCTGGTACAA 69903 29 100.0 37 ............................. AAGCTACCCCTGCAAGACATGAAATAATCGCAATGCC 69969 29 100.0 37 ............................. AAAAACTATGCAATTAGCAAAGTGATTTTATGTAATT 70035 29 93.1 0 .......................A....C | C [70058] ========== ====== ====== ====== ============================= ========================================== ================== 55 29 99.9 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : CGTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCCAAATCCAAGCCTTTTCCCACAACACCTAAACCAACAAAACCGCAACCAACGCCAAAACCGCCGGCAAGCCCTGCTTCACTAAAATCCCCTTAGAAGAAGTCGCCCCTCCAAACAGCGCCGCCACAACCACACAGCTCAAAAAGAAAATCTGCACAGTTTCAGCAAACCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGCGTCTGTACTTTCTTATTCGCAAGTAGTTCCTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //