Array 1 123274-120922 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGGLD010000001.1 Paenibacillus shirakamiensis strain DSM 26806 Ga0454138_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 123273 32 100.0 35 ................................ ATCAAGTACCAGGTTGTAGAGGAGAGTGTTTATGT 123206 32 100.0 35 ................................ AATAATATCCTCCAGAGCATGATACGACTTGCCCG 123139 32 100.0 35 ................................ CACCGGAGGACTTCAGACAGCTTGATATCCGGTTA 123072 32 100.0 33 ................................ CAACGGATACGTAGGCATAGCGAATACAGATCC 123007 32 100.0 33 ................................ AATATCATCAAGATGATAGAGACTCACAAGGTT 122942 32 100.0 33 ................................ TACATTGGCTTTGTTCTTGCGTTTCATAATGTC 122877 32 96.9 31 ...........................A.... TATCCTCTTGCGACTTTAATCCATCGAGCGG 122814 32 100.0 38 ................................ AGCCCTTAGCGGCAACAGGATCTAAAAATATAGTCATA 122744 32 100.0 35 ................................ ACCAACCGCTTATCCTAAACAGCTTCCAGATTATT 122677 32 100.0 34 ................................ AAATATTGTCGAGGGCGTTGTCAAAACGATTAGC 122611 32 100.0 34 ................................ CAGGAATGCCCTTTAAACATCTTGATATAGTTAA 122545 32 100.0 35 ................................ TATTCTGGGGTGAGAAATATTCCAGTAATCCTTCG 122478 32 100.0 36 ................................ TTCGACTTTCCCGAGATGGGCCACCTCATCGAGATA 122410 32 100.0 35 ................................ ACCGGACGCTCCGTTGCGTTTTACTCCTCTATTGT 122343 32 100.0 35 ................................ CAGTTGATTTAACCGCCGGTTTACGTGTTAATCCA 122276 32 100.0 35 ................................ ATGCATGTGACTTACTGGAAACAGTCACGGCAGCG 122209 32 100.0 33 ................................ CAGTAGTCACGGAAGTGTCCGTTTTCTCGGCAC 122144 32 100.0 34 ................................ TAACTCAGCTAAACTGCTATATTGCGGCACTATC 122078 32 100.0 34 ................................ TCTCATCTGGTTTGGATGGATGTTTCCTATCCTT 122012 32 100.0 35 ................................ TCTTTGGGCTCGTCTATCATCACCTCATCATGTAC 121945 32 100.0 37 ................................ TTAATTTCATAGATCTCTCCGTTAATAAATCCGCATA 121876 32 96.9 33 ..................C............. AAAGCAGGTATCTGACCTCAACAACGGTTTTGC 121811 32 100.0 36 ................................ CAATTCTGTGTCTGTCATCTGCAATCATTCCTTTTC 121743 32 93.8 33 ........GA...................... CAGCTCACCATTCATACGTGCTAAGGCTGCCTC 121678 32 100.0 35 ................................ CTTCGTATACTTTTGTTGCAACACAGTTTGAAAGC 121611 32 100.0 33 ................................ TTTTGGCCTTTGCACATAGCACATACGCATTGC 121546 32 100.0 34 ................................ ATCTTAGACCTCACGATTTCTAGAACATCTTGAT 121480 32 100.0 34 ................................ CCCAGAGGATATGAAGCTTTTTATCGCGGCCGGA 121414 32 100.0 35 ................................ TACATTCTGAAAAGTACAATCGCTTTTTGTTACTC 121347 32 100.0 33 ................................ CTCCTAGAATACAGGTACAGGCGGTCGATGAAT 121282 32 100.0 36 ................................ TCCTGTCCACTCTCTGTGACGGGCATCTTGGTTTTG 121214 32 96.9 34 ....................C........... CACTACGGCAGCCACTGCCAAAGATGCGGCAACA 121148 32 93.8 33 ..........G.............G....... CAAGGACGAACGCTCTGCAAGCTCATCCATGAT 121083 32 96.9 33 ..........G..................... ATCGAATGGATCTCGCAGCAGCTCAAACATAAC 121018 32 93.8 33 ..........G.T................... CTCCACGTGCATCTGCGCTGTCAGCTTTATTTT 120953 32 93.8 0 ..........G....G................ | ========== ====== ====== ====== ================================ ====================================== ================== 36 32 99.0 34 GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Left flank : AAGGAAGGGAATGAGATTACATTAATTGATATTTTGGGTAGCGAAGCAGATGACGTAGCCGAACATGTACAACTCAAAATGGAGAAGAGCAAAATCTACCAAAATCTTGACATTCTCGACGAGCGGGAGCAAGAGGTCATCCGTGGACGATTTGGACTGGAACAAGGTGGCGAAGAGCGAACGCAACGAGAAATTGCAAAAGAATTAGGCATAAGTCGGAGTTATGTATCACGTATTGAGAAGAGAGCATTAATGAAGTTGTATCATGAATTTTATAAGAAAAAGTAGAATTACTGATAATTAAAAATATAAATAATGAGGTGCGAACCCTAAGCTCACATAAAATCCCTAGGAGATTCGCACCTCATATTTTGTCGAATTTTAAATTAATTAGGGTGCTTGTTCAAAAGTCAAGGATTGATCTATACTAGTTATAGCGATAAATTACAAGTTTCCTATTAATTCATCTATTATATGGATGAATTAATAGGGATTTCGCT # Right flank : AAGTAAGGTTAGTTGCGCCCACAACAAGAAAAGGACGAGCTAATTAGCTCGTCCTTTTCCCTCTTCTATCTAACTATCTTGCCACTGACCTAGGACCAAGAGTACGTATAAAACTTCTCTGTTCCGAAGCGCTGTAGCAACTCAGCCTCAGCCATCTCTTCTTTGCCCATCAGTTCGGCAGCTTGGAACTGGGAACGGTGCGCACGAATGGATTGCAGCTTGTTTTGTAGAAATTCCTTAATATCTACACTTACGTCTGGATTGCCCAGATCTTTTTTCGTGTCCTTGGAGAAGGCCAAGCACTGCACGATTGGTCGTTCCGAAGCAGCTAGTCTTTCCACAATACGAACGACCGCTGCTCCAGTTGCATCATGATCGGGATGAACGCTATACCCTGGATAGAAGGTGAAGATCAGCGTAGGCTGAATTTCATGAATGAGATCGAGTAACGTCTGATCCAGCACCTTCGGATCTTCGAATTCAATTGTCTTGTCATGAAA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 126312-124555 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGGLD010000001.1 Paenibacillus shirakamiensis strain DSM 26806 Ga0454138_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 126311 32 100.0 32 ................................ TCCCAAGTGAAGCACCTCCATGTGGTTTGTTT 126247 32 100.0 33 ................................ TGTGTAGTGAGTGACTTTGTAATAATCGTCTGG 126182 32 100.0 35 ................................ CAAAGTATAAGGATACTGTTATTGATCTTGCAGCT 126115 32 100.0 34 ................................ ATAAAAATCGTAAATGGCAACAACGAAAAAGGAA 126049 32 100.0 34 ................................ ATAAAAATCGTAAATGGCAACAACGAAAAAGGAA 125983 32 100.0 36 ................................ AAAAACAGAAGCGGAAGCAGATTTCGTAATATATAC 125915 32 100.0 33 ................................ CTGAAAAACCGTATCCGGGAAACCCGTACATTA 125850 32 100.0 34 ................................ AGTCAAGTCACCACAGTTTTCAAAAAACACTTCA 125784 32 100.0 34 ................................ ACGTCTATCTAGTCCCGATGCGTCACCAATTTTT 125718 32 100.0 37 ................................ TTGCTAGACATTTCAAAGGTATCTCGGGAACGTCCGT 125649 32 100.0 35 ................................ TGCTGTCAAAGGGACTTCAAAAGCCAATGATCCTT 125582 32 100.0 34 ................................ AAACTATTCGGAGGTGTCAGGTAAGTATGAATGA 125516 32 100.0 34 ................................ TATGGATGACAAGACGCTCTCTTGGAGAGCTAAA 125450 32 100.0 34 ................................ CTCTATTTTACCTATTCTTACATGGGTAGATGCC 125384 32 100.0 33 ................................ ATTACTGTTACTGAAACGCTTGGCGGAGTCAAA 125319 32 100.0 33 ................................ CATGACGCTTGCCAATCAGATAAAAAAGGTACA 125254 32 100.0 36 ................................ AACGTGGTCATTATCCAACCCCCTCTGCAATACCTG 125186 32 100.0 33 ................................ TACAAAAATCAATGATCTCAGATCCTTTAGTGA 125121 32 100.0 34 ................................ TTCTGAGTCGTCCGAGATACCCCGGGCAACAACT 125055 32 100.0 35 ................................ ACCTTCGCTCCGCTTGATTGTTGTGGTGCAATTGC 124988 32 100.0 34 ................................ ATAGGTGGATTGGCTTATCCATTTACTGATCTAA 124922 32 96.9 36 .............C.................. ATAGACGACACTCCGGCGTTATCTGTCCATGAGATT 124854 32 100.0 36 ................................ ATCTAATTCCGCACTGCTTGTCTTGTCCGGATCCTC 124786 32 100.0 35 ................................ TCCGTCTACTCTTACAAATTGAGCATCAGCGCCGT 124719 32 100.0 36 ................................ ATAGTGCATATCAGCGGGTACCTGATAGTACCGACC 124651 32 100.0 33 ................................ ACCGTTATCAATCCGTTTAGCTCTGTACTCTCT 124586 32 84.4 0 ......T................A.GAA.... | ========== ====== ====== ====== ================================ ===================================== ================== 27 32 99.3 34 GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Left flank : ACGAAAAAAATTCATCCACATGACTTCACGATTACTGCCAGATACTCCATCATGTGAAGAAGCCATATCAATTTCCTCAGACATCATTTTGTTCAACTTCTGATAATTACTAGAAATCAGTTCCATTGCGCTTTTTTCATTATTAGAACTCATCGCTTCCCCTCCTCACAAAATTTTACATAGGTTGAATTATATTATATAACCTAAAATTCCCCTTTAATTTTAATATTCGACATTTCTGACTAGCAAACCTTTAACAAAGCAAGAAATTAAAAAAGCGTAAGCAAAAGAAGATAGATTCAAACAACAATATAATGTGGTGCGAACCCCAAGCTCACATAAAAACACTAGGCGATTCGCACCTCAGTTTTTGTCGAATTATGAATTAATTAGGCTGCTTGCTGTGAAGTCAAGGATTGATTTATACTATTAATCAGGAAAATATACTGAAGTCATACCCAATTCATCTAGTTAATAGATCATTTGTGTGTAATTTTGCT # Right flank : TTTTTCATGATGTAACCGCATATACAGGTCCTCAATCGCACTCCTTGCAAATATCTGATTTCAATTAGATATAGTCTCTATTAAGTTCACTAACCTTGGATCTCCACATTATTCCTTGATCTCTTAGAAATCTTTAAATTCTGCTTTACAGTACAATTATTTTTCTCAAGTCGTCCTGTACATACAGGATGCCTTTTTTTTAGATGTTCCTTCTAATCTTAATGATCGGGGTCTTCATTCGATGTCATAAAAAAACGGATTTAAATCATCAAAGTTACTTTGCAGCGTACATGCACTTCTAGGCGACGGCCTACATACAATGAACAGACCGCAAAGCCAGGTTGCATGCATTCTGCAGGAGGTGGCACCATTGCCCGGATTATTTACCGCAATTGCCCTGTTCATTAAGCAGCTCACACTACTCGTATCGTATGTCAAAAACAATGCATTCCCCCAACCTCTTACCGAGGAAGAGGAAACCAAACATCTCCTCCGTATGG # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 134388-135018 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGGLD010000001.1 Paenibacillus shirakamiensis strain DSM 26806 Ga0454138_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 134388 32 100.0 36 ................................ CACGTGGTATGCATACCCTACCCCCTACCAAACACA 134456 32 100.0 33 ................................ AGGACCTAAAACCGCATTTCCAATCAGTGTGAA 134521 32 100.0 33 ................................ TAACAAAATGTCATTGAGATACTTGATGTTTTT 134586 32 100.0 34 ................................ CAGCTCTTGATTTACCAGGAACAAATGGGGAATA 134652 32 100.0 34 ................................ TCCACACTTGCTATTAGCTCGCTCTCCTCATCGA 134718 32 100.0 37 ................................ GGCTTGAAGGTTCTTAGCATCAAGAAGCTTTGCGTAA 134787 32 100.0 34 ................................ AACTTGTGTTCCCAATGGTACATCAGCAAGATCA 134853 32 100.0 35 ................................ GCAAGGGCGGTGTGCCTTTAGATATATGGGCTGAG 134920 32 100.0 35 ................................ TTCGGTGCATATTTTAAGAATTGCGTGTAGCTTAT 134987 32 87.5 0 ..........................A..TTG | ========== ====== ====== ====== ================================ ===================================== ================== 10 32 98.8 35 GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Left flank : ATCAACTGTATAATCAGATTTCAGTAGATCTTTACAATGACACTCAGGATTATCCAGCACCCAGTGATATGGATTCACCCATTCCTATTCCTTTCTTGATTGCAAAAGGTGAGTTCACTATCGCATTATCTTTTGAAGGGAATGAAGCTGAAGCAACCCCATGGCTAAATCTCGCTAAAGACATCCTTGTGGAAGCTCTCCATTATGAAGGAATTGGGGCCAAAACGAACGCAGGATACGGAGTTTTTGTTGAAATAAATGGAGAACAGACTTAGATTTGAGTGCAGTTCCCAATAACATTGGATGAGTTGGACCTTAAGGTGCGAACCTCAAGCTCCCACGAAATCCCTGGGAGATTCGCACCTCATAATTTGTCGAAATTAGAGGGATGTTGACGCGTTTTTTTAAAATAATATGATCAATTTTTATTCTTGTTAAGGTTATGTAGTATGAAACGCATTAATTTATCAATTTAATACTAAAATTAACGTATTTTTGCT # Right flank : GACACACTTTCTCTCGCCTGTAGTTTTTGTTGCCCTAATGTATGCAGACTCATATCCTATAAAATATGATATTGCTCTCTTAAAAGCCTGAATCCTCAGGCTTTTTTTGTCATCTTCTTAACCTAAACAGAAGAATTTATCCCCTATAATTGGATATTCCCCCTTATGCGCCTAGCGTATTTTCTTGATAATGAAGGAGAATGAAAGCGGTTCCGAAACTTGTTGAAGACTGATTTCATTCCATAACTTCAGTCTATCAGGAGGTGAGAAAGGTTAGTCAATTCATGACCACGAACATAAAAGGCCTTAGTCACGATACGATATCAGTTTTATTATAAAAGGGGGAAAATTACGAATGAATGTTAATCACACACGTTCAAGCAAGCCGTTAATGATCGCATTAATCACGGCTTTATTTTTGTCACTCTTTGCATTTTCAGGTATGGGAGCTCCGAAAGCGAATGCCGCTGTAGCAAGCAAGACACTTGTAGGGTATTGGC # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //