Array 1 548293-546619 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGHJ01000001.1 Canicola haemoglobinophilus strain NCTC8540, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 548292 37 100.0 34 ..................................... GGAGTTCCACCCAAGATTTTATCGCCACGCTTGT 548221 37 100.0 34 ..................................... GTTTTTATTTTTGTAATAAGTTTCGTGCATTTCT 548150 37 100.0 36 ..................................... GCATAGCGTGCCCCAGCTGTGGACGCAATGTCCACG 548077 37 100.0 36 ..................................... TGTTGTAACGCGGTATTTAAATCCGCGTCTTTCGTA 548004 37 100.0 34 ..................................... TACGGTTTATTTAAAGTGATGTGGACTTGATTGT 547933 37 100.0 30 ..................................... AAATATTTTTCTAATTTTCTTTGTACTTCT 547866 37 100.0 33 ..................................... AGATATAAATAAGGAGTCAAAGATGGAAAAAAT 547796 37 100.0 34 ..................................... ACAATTAGCGTACCAACGCTAATGCAATTTCTTC 547725 37 100.0 35 ..................................... TTTAAATCCGCGTCTTTCGCAACGGCGGAGAAATC 547653 37 100.0 35 ..................................... ATAGATGGTGGTAGTTTGTTCTATTGCGATAATTA 547581 37 100.0 36 ..................................... TGACCACTATGACCTACAGTGAGGTTAGGGATCATT 547508 37 100.0 31 ..................................... TTCTGGGAGTAGTTTATCTACTGCACCATCT 547440 37 100.0 36 ..................................... GATAAGATTTGTTGAGGGTAATGTGGACCTGGTTGT 547367 37 100.0 32 ..................................... ACCACAGCCGTCGATTAAAGCACTATAATGAA 547298 37 100.0 36 ..................................... CTAACTAGCATTCTTTCCTGAATGCTTTCTTTTGTT 547225 37 100.0 34 ..................................... ATCATACCACTTTTGATTAGCGACGTACACGAGC 547154 37 100.0 36 ..................................... CTGAGTTAGATTAACAGTTAATGTAGCCATAATTTC 547081 37 100.0 34 ..................................... AAATATTAAACTCGTTGATAGTGGGAAGAGTAGG 547010 37 100.0 33 ..................................... CTTCTCAGACATGAAGCCTCCTATAATAAGCAA 546940 37 100.0 35 ..................................... TACCGAGACTTCGTTATTCAGATTGTGAGTTTGTT 546868 37 100.0 33 ..................................... GAACAAAATACTCTAAACCTAACATTGCAAAAC 546798 37 100.0 35 ..................................... CCAAAGACCTTTACCTACACCACCAAGAAGCTTCA 546726 37 100.0 34 ..................................... TTCAGTCATCTGAAGGTCAAACTGAGATTGGCCG 546655 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 24 37 100.0 34 GTCGAAAGACACTGCCCTGTTCTAAAGGGATTGAGAC # Left flank : TGAAATATTTAATTGGCTACGATATTTCTGATGAAAAACGGCTACAAAAAATTCATAAGCGTATGACCAAATATGCCACGCCTATTCAATATAGTATTTTCTTGTTTGAAGGGACTGAAAAAACGCTACGACATTGTATCGAAGATGTGCTAGATATTTTCAATAAAAAAGAAGATGACTTACGGATTTATCCTTTACCAAAAGAGGCAAAACAGTGGCAATTTGGCAAAAGTATTTTACCTGAAGGGATTATTTGGACCGCACTTCCACCTAATCAAACACATGCGTATCATTAACTTTTCGAGAATATTCCCTCTTTACTCGCATTTATTAAGGAATTTAGGTAGAATACCGCACGTTTTTTGACAATAATCACAGGGTATTTTTAAATAAATTGATTATTTTTCAATCAAATCAACACCCAACTCTTCAGACCTTGCAAAAGCTTGGGGAACCTATTTATAACTCATTGAAAAACAAAATAAAAATCGCCCTGTGCA # Right flank : CCGGGTAGTGTGTTCTTTCCATCATGCACTTCAAGCTGATAATAACAATATTAAAAATGATCCTTACATCCTTGGTATCCTTTATTTATTTGGCTTAGGTGGCAAAGCGGATTTAGAAAGAGCGGTCTATTTTTTGCAAAAATCTGAAAATATAAATGAAGGAAGAGCGGGTATTTATCTTGCCTATCTAGCAGGAATGGGAGTAAAGGTTGCAGAAAAATATCAACATTTTGATTTTGAGCCTTGGACACAAAAAGGCGAGGCATTTGCTCAAGTGCTATTAGCTGATAAATTGCACCAAGCAGGACAATATAAGCAAGCATTTATGTGGACAGAAAAGTCGGCTAAACAAGGAAACTCCATGGCTCAAGCTGCGATGGGTGCCTATTATATTGATGGCGATATAGTGGAAAGAAATCTCAATTTAGCGGTTAAATGGCTAAATTTAGCGGTGGCACAAAATAACCCACAGGCACAACATCTATTAGGTAACCTCTATC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAAGACACTGCCCTGTTCTAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.30,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 2060664-2061095 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGHJ01000001.1 Canicola haemoglobinophilus strain NCTC8540, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 2060664 32 100.0 34 ................................ TCAGAGAAGTTGACTAAGGTTTCAATCAACGAAC 2060730 32 100.0 35 ................................ TAAATTATTTCAGGATCATTTAACCATTCACTAAA 2060797 32 100.0 34 ................................ TCAGAGAAGTTGACTAAGGTTTCAATCAACGAAC 2060863 32 100.0 36 ................................ AGATCTAGTCATCTCGGTGCGACGTAAGTAAATTAG 2060931 32 96.9 36 ......A......................... AGATCTAGTCATCTCGGTGCGACGTAAGTAAATTAG 2060999 32 96.9 33 ......A......................... TAGTCATCGTTTGGATCGGATTCGCGATCCGAG 2061064 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 7 32 99.1 35 GCAGCCGCCTTTGCGCGGCTGTGAATTGAAAC # Left flank : TGTAAGGAACGAGATTATGCTGATGTTAATTACTTATGATATTTCCTTTGATGACCCTGAAGGACAAGCACGTTTACGCCGTATTGCGAAGCATTGTTTAGATTATGGTGTGCGTGCACAGTATTCCGTTTTTGAATGTGATGTAACGCCTGACCAATGGGTAAAGCTCAAAAATAAATTACTCGCCACCTATAATCCTGAATGCGATAGTTTACGCTTTTACCATTTAGGCAGTAAATGGCGTAATAAAGTGGAACATCATGGCGCTAAACCTTCAGTCGATATTTTCAAAGATGTCCTAATTTTATAAATCGCTAACCTATTGTTCTCATCAAAAGTTAGGGCGGTTAGCGATATTAAATTGCTCTTTAATAATCAAATAATTATCAAAAAAATATAAAGCAAATCTGGCTTATGCTATAATTTTTTAACTCCTTACAAGATGGTTAGCGAATAGAAGGCTATAAAACCTGATATTTCAATAGGTTATCGAGTAGGGA # Right flank : CAGCGGCGTGATCCAGCTTGGTTTATGACACCGACTGAACAACGCAACAGCTTACGTTTGCGTGATGGTTCAGTTACAGGTATTGAGTTACAGAAATTTGGCTGGATTACACATATTGCGAAAGCAAAAACTGGTTATCTTTCTCGCATTGGTCTAGTTCGCACACTCGTGTGGCCGTTTCTTTATAAAAACTATTCAGCACGAGATTTTGCTGAGTTTTTGGAGATTTATGGCTTACCTATGCGATTGGGTAAATATCCTGAAGGGGCAACGCCAACAGAAAAAAACACCTTATTACGTGCAGTAATGAGCATTGGTCATAATGCAGGAGGGATTATTCCACGAGGAATGGAGATTGAATTTCAGAATGCAGCTGATGGTGACAGTTCATCATTTATGGCAATGATTGAATGGGCTGAAAAATCCATGTCTAAGGCGATTTTAGGCGGTACATTAACTTCACAAGCAGATGGTGCAACCTCAACTAACGCTTTAGGCAA # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCGCCTTTGCGCGGCTGTGAATTGAAAC # Alternate repeat : GCAGCCACCTTTGCGCGGCTGTGAATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.74 Confidence: HIGH] # Array family : NA //