Array 1 82825-81940 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLUC01000012.1 Escherichia coli strain MOD1-EC5047 MOD1-EC5047_12_length_175134_cov_35.6084, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 82824 29 100.0 32 ............................. GTCACGACTGAAAAAAAACGCGTCACGCGCGC 82763 29 96.6 32 ............................T CTAAAATAGAAATTATTCACGGGGATGCTAAT 82702 29 100.0 32 ............................. TGGCAGATCGATTTTACCGCCAGAATGACAGG 82641 29 100.0 32 ............................. ATTAAGGCGGACGAGGAAAAGGCAGACGTTAC 82580 29 100.0 32 ............................. TTAGGCACAGAAAAAAGGCTACTCAGCGAACT 82519 29 100.0 32 ............................. TATCGACCCCCTTTCTCACGCATCGCCATCGT 82458 29 100.0 32 ............................. TTAACGTCTGGATCCTGTGTGCCATGGACCGT 82397 29 100.0 32 ............................. ATCAGGTAATCGAGACACCTGTCAGCACTCTC 82336 29 96.6 32 ............................C CCAGCGCCAGACGGGAACACAATTTTAAAGCC 82275 29 100.0 32 ............................. TTGTCGGGGATCTGTTCAAACTGACTCATTAG 82214 29 100.0 34 ............................. GGGGCGCATTAACAGAGAGAAAAACGCATAGGCC 82151 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 82090 29 100.0 32 ............................. TCGCTATTGCCGGTAGTGTCGCTGATAGACTC 82029 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 81968 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================== ================== 15 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGGTTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGAGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 109468-108524 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLUC01000012.1 Escherichia coli strain MOD1-EC5047 MOD1-EC5047_12_length_175134_cov_35.6084, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 109467 29 100.0 32 ............................. AGGCGCGGAACTCCTGGACGAACGCGCTCTGG 109406 29 100.0 32 ............................. ATCACCTTCGGCGCTTACGTCGCCGTCCGTGT 109345 29 100.0 32 ............................. GGGTATATCTTGTACGCGACTGATCCTGATTT 109284 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 109223 29 100.0 32 ............................. GACGTTGCGCGCACTAAGAAAAACAGGTTCGA 109162 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 109101 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 109040 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 108979 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 108918 29 100.0 32 ............................. TTAAAACATTTTCCGAGCTTTGCGATTTATAT 108857 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 108796 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 108735 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 108674 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 108613 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 108552 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //