Array 1 5307-5518 **** Predicted by CRISPRDetect 2.4 *** >NZ_WFJM01000143.1 Klebsiella pneumoniae strain 071I9 071I9_S29_R1_(paired)_contig_143, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5307 29 100.0 32 ............................. ATCAGCCTGCGGGGTTCGGAGCTGCGTGTCTC 5368 29 100.0 32 ............................. GAAACTATTTCGGAGCATCTCATTGCTGAGGG 5429 29 100.0 32 ............................. TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 5490 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 GTATTCCCCCCGTGTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : TCGTGTTGTCCACGGT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5194-4561 **** Predicted by CRISPRDetect 2.4 *** >NZ_WFJM01000222.1 Klebsiella pneumoniae strain 071I9 071I9_S29_R1_(paired)_contig_222, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5193 29 93.1 32 ............TG............... TTACCAATGGGGAAAAATCTTCATTTGTAAAT 5132 29 100.0 25 ............................. AACATCAGTGGAAATCCACTGCGGC Deletion [5079] 5078 29 96.6 32 ......T...................... AGCAGTTCGAGGAATAGTGACAGGCAGTGCAG 5017 29 93.1 32 ............TG............... TTAATGTTTTGTTAATTTATGAGTGTGGTGAT 4956 29 93.1 32 ............AC............... AGCAAATCGAAAATCCGGCTGTTTGAAAAATG C [4951] 4894 29 89.7 32 .............T.A............C CATGAGCCTGCGCACTCTGACGCGCACCTGCT CC [4888] 4831 29 100.0 32 ............................. CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 4770 29 93.1 31 .............G.A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 4710 29 93.1 32 ...C......................T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 4649 29 96.6 32 .............T............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT 4588 28 86.2 0 ........T.A............-....A | ========== ====== ====== ====== ============================= ================================ ================== 11 29 94.1 31 GTATTCCCCCCGCATGCGGGGGTTATCGG # Left flank : CCTTAGAGAAGCAAAAAAACCACCGAGGCAGG # Right flank : CATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGAAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAGCTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAAC # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:-0.02, 8:1, 9:0.32, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [9-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.42,4.5 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], //