Array 1 38407-37977 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSET01000008.1 Aggregatibacter actinomycetemcomitans strain PN_740 8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 38406 33 100.0 34 ................................. CCCAATATTGACGGTGAATACTTGGTTTATATCC 38339 33 100.0 32 ................................. TACTACCAAAACCTGTAAAACCACCAGATTTA 38274 33 97.0 32 ................................T TGTAATCTTTTAGCTGGTGAATCTTTATCATT 38209 33 97.0 35 ................................T ATCAAGGCAATGGGGTTGTTGACAGCAGCTACTAA 38141 33 97.0 33 ................................C TTATGTAGGTTATATATTAGCACCTGTTGCTGC 38075 33 100.0 33 ................................. CTACCGGCACCTGGAATTGGTTAGCCAATACCC 38009 33 81.8 0 .......T.....CA.....C...T......T. | ========== ====== ====== ====== ================================= =================================== ================== 7 33 96.1 33 GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA # Left flank : GTTTTCCCATGCGCAAGCTGCAAAACACGCTCTATATCACCACTCAGGGCAGTTATCTGCATAAGTAGCGGGAAACGCTGGTGGTGGAGCAGGAAAGGAAGAAAGTGGCGCAACTGCCGGTGCATTCCATCGGGCATATTTTCTGTTTCGGTAATGTGGGTAAAATTGAAGGCTAAGCTACTGGCGACTTATGATCCGGATTGTGATAGTTTGCGATTTTATCATCTAGGTAGTAAATGGCGTCGCAAAATAGAACACCACGGGGCGAAACCGGCGGTGGATGTGTTTAAAGATGTGCTTGTTGTCTAGCTCGCTAACCCTGAGTTCTCATCAAATTCCTGTTAGGCTAGCGATCCTGATTTTCTTTAACAATTTGGAACAGTTAATTTATTTGTATAACGAAGATATGCCCGTTATACTTATCCCACTCTCTATTTTGAAATAAGTTAGCGAAATGCAGTAAGTAATCTCCTGATTTTCCTTGTTTTTTCAGATAGGGA # Right flank : GGCGCTTTGTTACATCTGAACTCTGACACCAACTAAACTAAGCACCTTATAAAAATAAGGTGTTTTTCTTTTCCCGCAAACCAACACAAAACTCCTTGCCCTTCCTCCGCAAAATATATAGACTGAAGCCCGTTATTAGTCGGGGTGCTTTGTGCTGAGATGATACCCGTGAACCTGATACAGTTAATACTGACGTAGGAAACTAACAGAAATCATATTTCCTTTCTTTTTCTCTTCATCGTCATTATTGCTGATTATCTTTTTTTCGTTAAAAAAAGAAAAATTATGCAATATGGTTTTTGTTGTCCGTTATTTGTAAATAACGGAGGGCGTGATGAGTAAGGTTGCGCAAGCGTTGACCATCGCCGGTTCGGACAGCGGCGGCGGTGCCCGGGTTCAGGCGGATTTGAAGATGTTCCAAATGCACAGGATGTCATTTGGTACATCGGTGGCCGCGCAAAATACCTTGAACGTGGTTGATATTTACGCCGTGTCACTCA # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 40734-47668 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSET01000017.1 Aggregatibacter actinomycetemcomitans strain PN_740 17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 40734 28 100.0 33 ............................ ACAAGATTCAAAAATGAAATTCAAATTTCAGAT 40795 28 100.0 32 ............................ ATAGAATTACTTGGTAATACTTTTAAATACTG 40855 28 100.0 32 ............................ AATGGCACATAATTTTGTTGGTTTAGGAGAAC 40915 28 100.0 32 ............................ TAATGTATCACATATTCTTCACTGCCGAATAG 40975 28 100.0 32 ............................ AACGTGCATATGGATTAATGGCAGACCAAATA 41035 28 100.0 32 ............................ AAAATCACAGTCAGAAGCGGATTTTGCACTAA 41095 28 100.0 32 ............................ TTCAACATTCTATGATTCCTTAAGCGATAGCC 41155 28 100.0 32 ............................ TAGTCAATTACAAAGTTTTTTGCTAAATCTCG 41215 28 100.0 33 ............................ CATTTAAACGTTTAAGTACTTCATCATTAATAC 41276 28 100.0 32 ............................ TTTTTTAGCAATTCTTTAAACCCTCTGTCATT 41336 28 100.0 32 ............................ AAAGACTTTCCGATTATGAAGTATATGAGCAA 41396 28 100.0 32 ............................ TGAAACAAGTTCTCCTAAACCAACAAAATTAT 41456 28 100.0 32 ............................ GCCTTTCTCAAAGGTAGTTAACATTTCACCAC 41516 28 100.0 32 ............................ TAGAAGACCGCCATTTAACGAAAATCACATGA 41576 28 100.0 32 ............................ CTGTATGGTTAAAAAACATTGACTATCTTCTG 41636 28 100.0 32 ............................ TGATTTGTTGTATAAATCTAGTAAAACTTTAC 41696 28 100.0 32 ............................ ACAGTATGAAACATTTATTGTAGATAATGTGA 41756 28 100.0 31 ............................ TCATCTGATAAATCTTTGTTGATTTCGTCTA 41815 28 100.0 33 ............................ TTTACCTGTTGCTGCTGTTGCCGAAGTAGCAAA 41876 28 100.0 32 ............................ AATTGGAATTAGGATCGGATATTGCTGGTCAA 41936 28 100.0 32 ............................ TAACCCGCTATTTGTCTTAAAATTGAGCATAT 41996 28 100.0 32 ............................ ATATGAAATTAACGATATAAATCTATTTTTAG 42056 28 100.0 32 ............................ TACTATTAAGGAGTTATAATGTATCACATATT 42116 28 100.0 32 ............................ TTTATAAACGAAAGTACCAATCTTATTGTTGA 42176 28 100.0 32 ............................ TATAGAAGGTAGTGAGGCAGAATGTTATTCAG 42236 28 100.0 32 ............................ TTTAAGTCGTCAATTGATGACAGAAATTTTAA 42296 28 100.0 32 ............................ TGATGGCTTTGGCGGTTCCACTCAAATTGAAA 42356 28 100.0 32 ............................ ATCAGGCTGTTTACATTTTTTATAACCGAAAC 42416 28 100.0 33 ............................ CCGGGAACTCCCGGTGATAATAAAGGTGATGGT 42477 28 100.0 32 ............................ TTAAAACCTTACATTTACCCGGATGTACAAGA 42537 28 100.0 32 ............................ AAGCGTTTTTCACCTCTATCATCAACACCCGG 42597 28 100.0 32 ............................ GTATGGATAACCCGTTAGGATTTATTGTGACA 42657 28 100.0 32 ............................ TAACAGGCATTGGGAAAGAAGCAATGGCTCGT 42717 28 100.0 32 ............................ ATTCAAAATTTGCTTTGCTTGTGACATATCTT 42777 28 100.0 32 ............................ TGATGAAAAAATACCAAGTGGCGCATTTGGCC 42837 28 100.0 32 ............................ AATTATATGATTGATCATGCAAATTCATGGAA 42897 28 100.0 33 ............................ CTGTACCAGATATATTGTAGGCACGACCACATA 42958 28 100.0 32 ............................ TTCTATCTGCTCTCTTTGATACAAATAATAGC 43018 28 100.0 32 ............................ CGTGAAAATTTGATATTTTTGAGAACCTTCTA 43078 28 100.0 32 ............................ TGATTTATCTTGAAAAACGAGTTTGTCATGAG 43138 28 100.0 32 ............................ ATATTGCAATTTGCTCACCTTGAATACTTAAT 43198 28 100.0 32 ............................ GATTCACACCTTGTGCCCATGCCGGTGGTGCA 43258 28 100.0 32 ............................ TTATTGGGAATCAGTAGAAAATATAGGACAGG 43318 28 100.0 32 ............................ TAATCAATTACAGAGTTTTTTATTAAATCTGG 43378 28 100.0 32 ............................ GCCTAACACAACGCCAAAACACGTTTCTTTTA 43438 28 100.0 32 ............................ ACAATATTGTCCCCCTGATATGGGTTTTATTA 43498 28 100.0 32 ............................ TTTGCCATTACCAACCCCAGAACCGCCATTAC 43558 28 100.0 32 ............................ TTATGCGTTTTGTTATTCGTCGTATTCCGATT 43618 28 100.0 32 ............................ TTAATGTCCTTTCTAAATCGGGAGTTTGCAAA 43678 28 100.0 32 ............................ CATTGCTTTTAGATATTTTTGTCGGTGATAAA 43738 28 100.0 32 ............................ AGAAGCACCAGAAGATTAACTAGTAATATTAA 43798 28 100.0 32 ............................ AATGCCTGTTAGACCCAACAAAACAAAGTAAT 43858 28 100.0 32 ............................ TGAAGCAAAACAATTTGATACATTTGCGATTG 43918 28 100.0 32 ............................ TGTTCCCGAAACATTGTAGGCACGACCACATA 43978 28 100.0 32 ............................ AAGTGATTAATGTCCAACAAGAAATAGAAGCA 44038 28 100.0 32 ............................ TTTTAATGGAGCAATCAAACTATATGATTTAT 44098 28 100.0 32 ............................ TAATCGCTTTTCAATGTAATGTATGGTTACAC 44158 28 100.0 32 ............................ TTATGAAGAAGCAATGATGGCTTTAATTATTT 44218 28 100.0 32 ............................ AAAATGATAACATTCTCAAGTTTTCTGCTCAT 44278 28 100.0 32 ............................ TGTTAGACCTAGCAACACGAAATAATTATTGA 44338 28 100.0 32 ............................ TTAAAGACGAAAACATTCCGGTATGGAATTGT 44398 28 100.0 32 ............................ TCTTTCTTAGGTTTCAGAAGTTGATAAGGAAC 44458 28 100.0 32 ............................ ACAATTAAAACTCCAATTTTGTGCCCTTTTAC 44518 28 100.0 32 ............................ AAAATGATAACATTCTCAAGTTTTCTGCTCAT 44578 28 100.0 32 ............................ AACGATATTACTGTCAATTTTTTTTGTTTCAC 44638 28 100.0 32 ............................ TATGACTTCTACAATTTGATTTTCAGATAAAA 44698 28 100.0 32 ............................ CACCTCGGGGTTCTCTGATTCAATTTTATGAA 44758 28 100.0 32 ............................ ATACAACCGGCAATTCTGTTTTATAAATTTTA 44818 28 100.0 32 ............................ AAAATAAAAAAAAATATTTTTCGTCCGATTTG 44878 28 100.0 32 ............................ TATAATGTATGCCCACGATGGCAGCTGGTACT 44938 28 100.0 32 ............................ TTGCCCTACTTGTGGAACAAAATTCTGTTGAA 44998 28 100.0 32 ............................ ATTCTTTGTTCTATGCTCATTGTAAATCACAT 45058 28 100.0 32 ............................ ATATAATTGTTCAGCATTATTTAAAGTACCGA 45118 28 100.0 32 ............................ TTTGCTAAGGTGCTTTTTCTTTTTCAGTTTCC 45178 28 100.0 32 ............................ ATGTGCGCCCCGCTGGTTCATCCCGATACTGC 45238 28 100.0 32 ............................ TTCAAAATTGGTTAGTCAACAAGGTGTAAAAG 45298 28 100.0 33 ............................ CAGAAATTGTAAATTGAATTTTTAAGAGTGAAC 45359 28 100.0 32 ............................ TGTGGATAACTATTCAACATTTTCGATCTAAA 45419 28 100.0 32 ............................ AACTTTTATTTATTTCGATGTCATTTTTCATC 45479 28 100.0 32 ............................ AAGCTTCCAAAATTTTTGAAGTAGCGGCTGCT 45539 28 100.0 32 ............................ TGTAATATAAACATTTGTAAAAAATCCATTTT 45599 28 100.0 32 ............................ ACTAAAAGCTTAAAATAAATTAAGCTACCACC 45659 28 100.0 32 ............................ AAGAACATTAAAGAAGTGTCTGCTCCTGCTTT 45719 28 100.0 32 ............................ TACAATTAAAACTCCAATTTTGTGCCCTTTTA 45779 28 100.0 32 ............................ TGAATATTTAATAAAACAATTATTAATCTTAT 45839 28 100.0 32 ............................ TAACAAATCCTTTCGGCGTTTGATGAGTAAGT 45899 28 100.0 32 ............................ ATCGTCTAAAGAACTGTTAATATTGTTATCAC 45959 28 100.0 32 ............................ TGTTAGACCTAACAACACGAAATAATTATTGA 46019 28 100.0 32 ............................ TACGGCTAATCCATTCCCGACAGCACAACCGG 46079 28 100.0 32 ............................ AAGATGATAACATTTTGAACTTTTCTGTTCAT 46139 28 100.0 32 ............................ ATGGAAAGGCGCGATGATTTGGTGCAATCCTC 46199 28 100.0 32 ............................ TAAATATTTCCCGCTATAATAGCGGGATTTTT 46259 28 100.0 33 ............................ AATAATCCTCTCGGAAAGCAGTGTGTGCGGTAA 46320 28 100.0 32 ............................ ACGGGCAAAAATATATCACCAGGGGGAGGGGT 46380 28 100.0 32 ............................ TGTTCAATGGCGTATTAGTTCTTGTAAGGGTC 46440 28 100.0 32 ............................ AGTATATAACCCATTTTCGTCTAATTCTCTCG 46500 28 100.0 32 ............................ ATTCAAAATTCGCTTTGCTTGTGATATATCTT 46560 28 100.0 32 ............................ TAAATATTTCCCGCTATAATAGCGGGATTTTT 46620 28 100.0 32 ............................ TTTTCCAGATGGTGAAAATTCAGCATAAGTAT 46680 28 100.0 32 ............................ TAGCATACCATAATACAAAAACTAATCATGGA 46740 28 100.0 32 ............................ TTTAATAAAAGATTCAATAACTGATCTAGGTA 46800 28 100.0 32 ............................ TAACATTTCATACAGATTCAAGAAACGTTGTT 46860 28 100.0 32 ............................ TTTAAATTTAAAAAATCTATAATTGCTCAAAT 46920 28 100.0 32 ............................ TCTGAAATAGCTAATATTTCCACCAATAAAAG 46980 28 100.0 32 ............................ AAAAGCGATCGCATGCTCCGCAACTGCAAAAA 47040 28 100.0 32 ............................ AAGATGATAACATTCTGAACTTTTCTGTTCAT 47100 28 100.0 33 ............................ ATTCTTCTACCAGTATTTGAACAATACCTTTTA 47161 28 100.0 32 ............................ ATTGATCAACAATATTTTTCAATGTTTGATAT 47221 28 100.0 32 ............................ ACCAATAAAAATTATCTTGCTTTGTAATATAA 47281 28 100.0 32 ............................ CGGGTATTACAGAGCTGCAAAAAGCATATAGC 47341 28 100.0 32 ............................ ACCTGGTGTTGTAAAGGGGTGACGTTTGAAAC 47401 28 100.0 32 ............................ TCTGCAATCAGCTTTTCGGTGCCGTAGGCTTG 47461 28 100.0 32 ............................ ATTCAAATGCTGGAAGACGCTGAATTAATCAC 47521 28 100.0 32 ............................ CTTACCATCACCTTTGCCATTGTTTGTTCCGG 47581 28 96.4 32 .................T.......... GGCAGCGGTAAAAGTTATGAGGTGGTCCATTC 47641 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 116 28 100.0 32 CTTCACTGCCGAATAGGCAGCTTAGAAA # Left flank : CGCTCGCCCGTCGTAACGATGAAAATCCGGAAGTCACAGACCGTTTTGAACTCTTCATCGGCGGACGTGAAATCGGTAACGGCTTCTCAGAATTAAACGACGCCGAAGACCAAAACGACCGTTTCGACGCACAAGTCGCCGCCAAAGAAGCCGGTGATGACGAAGCGATGTTTAAAGATGAAGACTTCGTGATCGCACTCGAACACGGCTTACCACCAACAGCCGGCGAGGGCTTAGGCATCGACCGCTTGGCAATGCTCTACGCCAACGCGCCATCTATCCGTGATGTGATTTTATTCCCGGCAATGCGGCAGAAGTAGTTAGCACAACTATCAAGATAAAAGGAAGTCATTCGGCTTCCTTTTTAATTCCCCTTTATTTGCACAATAAAAAAATCCCCTTTAAAAACAGTATATTAAAAACACAATCTATAAAAAGGATTTTCACTTTAAAATACGCTAACAACTTGGTATATCAGCTATTTTCAGTTAGAATGCCTA # Right flank : ATACACGCTTTATGATACCGATTGCAAAGTGTAGTAATACACTAATCCCGCAGTCGTCAATAGGTGGAAAAATACCATCAACAAGAGGATTTCTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched CTTCACTGCCGAATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //