Array 1 749-422 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEVT010000025.1 Erwinia amylovora strain Ea1-98 Ea_1-98_contig_25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 748 28 89.3 31 ......C...........G........T TTACGTTTGCGTTAACAGTAAGCTCTGCAAC 689 28 100.0 32 ............................ GGCTAAATGCCTGAATTCAACGTTCTACAAAA 629 28 92.9 32 ......C...........G......... ATCGCACCCCACTGATTGAAGAGCAGCACACT 569 28 92.9 32 ......C.................T... GAGCAATATATTCGATAGACGCTGATTTGCGT 509 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 449 28 78.6 0 ....................NNCGT.C. | ========== ====== ====== ====== ============================ ================================ ================== 6 28 91.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGCGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCACCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGATTGGCGTTATAGGATGGTTGTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTAAATGCGATAAGCCAGTTAGCGTAGTAATGTAACG # Right flank : AGGCAGCTTAGAAAGCCAACGTTCACTGTCATTTAGCCACGCTTCGGGTTCAATGCCGTACGGGCATTTTATTGATGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCATCACGGGCTTCTCATCCTGTGGACATTACGCTGAAAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGTTTAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAATCGCGGGTTTTTCACGGTTTTTTTACAATAAATAAAGAAAGATCTTATTTTTTTCTATGCTCATAATTTGGC # Questionable array : NO Score: 3.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 12744-10213 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEVT010000025.1 Erwinia amylovora strain Ea1-98 Ea_1-98_contig_25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 12743 29 100.0 32 ............................. GCATCAGGAGACATGGATAGCCTTGAACGCTC 12682 29 100.0 32 ............................. CAACAAGCCAATACGCATATCTGGCGCAGGTG 12621 29 100.0 32 ............................. GACGCAGGCTAACGGCGTACCCTGACGGCGGC 12560 29 100.0 32 ............................. CATTAAAAATATGACAGATTTAACACCGTAAT 12499 29 100.0 33 ............................. CGAAGCAAAAATTTATTCAGCCGTTAGCGGGAT 12437 29 100.0 32 ............................. CGCGATTGACGTGATGAATCAGCTAAACAGGC 12376 29 100.0 33 ............................. CCCGGCAAACTCCAGCAGTTCGCGGACGTTGAA 12314 29 100.0 32 ............................. CTCAACGGCATTAAATAATTTCATAAAATCAA 12253 29 100.0 32 ............................. CAATGATGAGGGCAGCAGAACGAGACTGGAAA 12192 29 100.0 32 ............................. GACATTGAGAAAGATCCGGTTAAGGCCCTTCA 12131 29 100.0 32 ............................. GGGAATCCATAATGATTTATTCTATCGACGGA 12070 29 100.0 32 ............................. GCCTCCCCTTCCAAATAACGTTTCCGTAATAG 12009 29 100.0 32 ............................. CCGCAGAGTTTCGCCGATATGCGCGATAGAGC 11948 29 100.0 32 ............................. ACAGCGATGGAATTAAAGGCTGATAAAAAAGA 11887 29 100.0 32 ............................. GAAAGGCAGCGCCGCTTGATGCTTCTAAATTA 11826 29 100.0 32 ............................. CGCCGCATATCCGCTGCTGTACGCACTCCCGC 11765 29 100.0 32 ............................. GCGTTAGCGTCATCTGGAATTGTAAACGAAAC 11704 29 96.6 32 A............................ GTCGGGGTGAGTAAATACGACTCAATCAGAGC 11643 29 100.0 32 ............................. CGAAGGAGAAGGGCGATGTCAGTCGTTAAAAG 11582 29 100.0 32 ............................. CGGATGGGATGGATAGCGCTGAACGCCGTTCT 11521 29 100.0 32 ............................. GAAACTGAAATGAAACTGAACCCGGGAATAGT 11460 29 96.6 32 ............................A GCTGCTGTATAGAAAGGATAAAATAATTTATC 11399 29 100.0 33 ............................. AATTGAGTAACAACGCAAAGCCCTTTCCGAGGG 11337 29 96.6 32 ............................T TGTTAGATGATGATATAATTCATTATGCGAGA 11276 29 100.0 32 ............................. CTGTGCCTGACGCGCGATGTACTGGTTATAAA 11215 29 100.0 32 ............................. GTGAAAACGCCGGGCGGATTTATTACCTACGA 11154 29 100.0 32 ............................. TGAATTGCACGCTGCCGGGAATCAAACCCAAT 11093 29 100.0 32 ............................. GACGTTTCTGGAACCTGTTCCGCACAAAGACG 11032 29 100.0 32 ............................. GTGGGTGGGGCAGAGTTTGCGAGCATATCTCC 10971 29 100.0 32 ............................. GAACCTGCTTGCGGTCAAATACACGCTTCCAG 10910 29 100.0 32 ............................. CCGTGCGAATGCTGTAACGGCGAGGGATTCAT 10849 29 100.0 32 ............................. TCAAAAATCTCGAATTGCTCGGTAAACACGTT 10788 29 100.0 32 ............................. GGAGCTGGCAATGATGACGAATGAGGATAGAC 10727 29 100.0 32 ............................. GAAGGAGACGAGGAACAGGATTAGGTATACAT 10666 29 100.0 32 ............................. AAGCAGAAGTGACAGTAACGCTCTGTTTGACT 10605 29 100.0 32 ............................. ATAAATTCAGGATAAAATATGAATGAAAAAAT 10544 29 100.0 32 ............................. TAGCAAGGGCTTATTACTCTCACAATCCACGA 10483 29 100.0 32 ............................. TCACCACTGGCCAGCGGATCCCGGGGACCGGT 10422 29 100.0 32 ............................. GTGCTGATGGAAACCATCGAGAAGGCCGGGGC 10361 29 96.6 32 ................A............ GATATTACGTGTACGCACAGCCGCTGGCCAGT 10300 29 100.0 31 ............................. CAGAGCGGGTCAGATTCAGGGATGTATGTCA 10240 28 79.3 0 ...........AC..A-....C......A | ========== ====== ====== ====== ============================= ================================= ================== 42 29 99.2 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : TCCTCTGATTGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCTACCCCCGCAGGATACCCAGCCGGTTGCCATCCCTGAACCTCAGTCTCTTGGCGATGTCGGGCACCGGAGTTCGTAATATGAGTATGCTGGTAGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGACGTTTCGCGCCGTGTGCGGGAAATGATTTGGCAGCAGCTGAATCAGCTCTACGAGAATGGCAATGTGGCGATGGTATGGGCCACCAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCGGTCTGACATTTAAAAACGGGTCTTTTTCACAGTAGATAATCTGGTAGATTTTGACGGGTGAAAAAATCCGTTATAATTCAGCTGGATGGATTTAGA # Right flank : ATGATATGTTTAATGCCAGCCCGGCCTCGGTATTGCCTCGCCGGACTGAGCCTGAATACATTACCGGCAAAAGAGGGTAACACTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGGCTGGTCGAATATCGCCCTGGGTGCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTAAAACCAGCAAGGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAATCCCTCTTTGGCTGGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCACA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 45471-42510 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEVT010000025.1 Erwinia amylovora strain Ea1-98 Ea_1-98_contig_25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 45470 29 100.0 32 ............................. GCCCGGCGTGTCGTCGATGTAGAGCATGTCTA 45409 29 100.0 33 ............................. CTTGTGACAGACGGGATTAAGCAGGCCCCACAC 45347 29 100.0 32 ............................. CTTCCCTCCCGTGTTTTCATCAGGGTCTCACT 45286 29 100.0 32 ............................. GAGTGGTGCACGAGCTGCTGCAGTTCTTGCTT 45225 29 100.0 32 ............................. AACAGGACGATAACAATTTAAATCCTGCTGAT 45164 29 100.0 32 ............................. ATTCTGGAATCAATAAATCAGATCCACGACTT 45103 29 100.0 32 ............................. GCGACCCGGTCGCCGTGTCAAAAGGCCGAATT 45042 29 100.0 32 ............................. CCGATAATGAAATAATTTATGCCGATGTTAAC 44981 29 100.0 32 ............................. CTGCAGCCGCCCACTAAAACGGGGATCAGCAT 44920 29 100.0 32 ............................. GTTCTTACTTCGGATTAACTTAATAACGCTCT 44859 29 100.0 32 ............................. AGAATCCCACGATGGACTCGGACAGGCCCGCA 44798 29 100.0 33 ............................. CCGATGCCCTATGGTCACCCAAAAATAGACGGT 44736 29 100.0 32 ............................. ACGCGGGTTACAGTGACCTCGGCGCAGCAATG 44675 29 100.0 32 ............................. TGGTTGGGCGATGTGAATGGACGTTTGAGCCG 44614 29 100.0 32 ............................. CAATTGATCGGCTATCAGGCAGAGATCGCCAG 44553 29 100.0 32 ............................. TTAGCGCCCTTCTAAGCCGTAGGTCACAGGTT 44492 29 100.0 32 ............................. TCGACCCCGCCTCTAACGCCCCGCCAGATTTT 44431 29 100.0 32 ............................. TTGTCAGTTGCAAACATCAACAGCTCAATTAC 44370 29 100.0 32 ............................. TCCACCAAGAGGAAATTAGAGCTATCCAAGAT 44309 29 100.0 33 ............................. CGGTCAATTTTCCTGCTCAATGTCAGTTTTCAA 44247 29 100.0 32 ............................. GTATCGCTGCGCAGTGACCAGTTGTGCTTTTT 44186 29 100.0 32 ............................. GCTGAAATCAATAACATCTCCTGGATTTACAG 44125 29 100.0 32 ............................. ATGTCGAACCTGTCGGCGTATCAACTGGGCTG 44064 29 100.0 32 ............................. TTGGGCGAGATTACTACCCTTTGGAGGGTTGA 44003 29 100.0 32 ............................. GGGATTCAGCGGGTAAGCGCGAGCGTTAACAG 43942 29 100.0 32 ............................. TGCCGGAGCAAGAGACCCCCACAATGGACTCT 43881 29 100.0 32 ............................. CATTCCTGAAATTGAGCAGGCAGATAGCTTAG 43820 29 100.0 32 ............................. GGCAGAACATGCAAACTTATGACCGCGCAACC 43759 29 100.0 32 ............................. ACGTAACACTTATCTTGCTAATGTCGCTGAAT 43698 29 100.0 32 ............................. AGGAGCCTAATGATTACGGCGAGTATATCGAT 43637 29 100.0 32 ............................. CAGACCAAACCATACCCCTGCTGAATATGTCC 43576 29 100.0 32 ............................. CGTAATCTGATGGCTGATAGCTGGGTGTTGGT 43515 29 100.0 32 ............................. CCTGTCTGATGGCCTTCAATCAGTTACCTAAC 43454 29 100.0 32 ............................. TGAGATTGATGCAATATCGGTCATTGTGTCAC 43393 29 100.0 32 ............................. TGTCGAGCGAGATAGAATCTGTTAGCTGGCAC 43332 29 100.0 32 ............................. CTCTGGAAACTCACTTTCGGCATGTATGCGAC 43271 29 100.0 32 ............................. TATGTTAATTTCCCCACGTTCGTACTCATCGC 43210 29 100.0 32 ............................. TCATCGCGCCGGTAATTCGTCATCTCATGAGG 43149 29 100.0 32 ............................. AATTGAGCTTTCAACGATTGCAGTCCCCGCGA 43088 29 100.0 32 ............................. TTCACAGACTGCTTTCTGCTTGCGGCTATATT 43027 29 100.0 32 ............................. CATCCATCGGCAGTTGCGGCTGATATATTTGA 42966 29 100.0 33 ............................. CAGATTGAATCACCACTTGCCGGGAGGCTGGCA 42904 29 100.0 32 ............................. CCTGCGTGAGTCAGCGAGTCAAAAGGGGCTTT 42843 29 100.0 32 ............................. GTTCCCGGCGCTTCGCCACTCTGCCACCACTC 42782 29 100.0 32 ............................. TCGGCTATGCCGTGGGGTGAATGATGGAATTT 42721 29 100.0 32 ............................. GCAAAAAAACATGACTGCATATCTGTATCGGC 42660 29 100.0 32 ............................. TGTTCTCCGTCGAAAAACGACGCCAGGATCAG 42599 29 100.0 32 ............................. AGCAGTACAACATGTTCGGCTCGGCAATTAAT 42538 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 49 29 100.0 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : AGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGCCCACGAAAAAGGCAGGGGCGGTTAACTCCTTGCCTTATTCGAGTGACTTCAACCCTTACGGGCGTCCGGTCGGTTGCTCAATGGCAACGATAATCAGCGAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCAATAGTATTTCCTTGATATAAGAGCGTGCGCGCAGCATGTGGATGCTTTTGGGCTACTCTTGGCGGCCGCGTACCGGTCGACAAAAACCAACCCGGTTTACAGGCCGGTTTTTTTTTCGCCTGCACGCTGCCATTTCCGCTATATTCAAGATGTTCACTAAGCCGTTTACCCCTTATATCTGGCCGTGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAGAGTGGAAAAAAGTTGGTAGAATTGTAAGGGGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : CCAATTGTACTGGTCTGTCGCTCAACCATGTCACCGATGCAGAGGTGTCTCCAACACTCATGGGCCGGAGAAACCAATGCATACCCCACTGACGGAGCTTATGACATCCGGTTGGGGCATGATCAACGGGGGCATACGATAATCAGATTTGTCCCCCTTCCCGGCTTACTGGCAAGAAGAATATGCAGATGCACCGGGCGCTAAATAGCCGTTCAAAATAGTAGATCACTTTGAGGGCACACAACCCGGATTATGCGATCTTATCAATCGCTGAATATCCCAAATCACCAACCGGACTGAGCGATGCCGTTCATAGCATCAATACCTCGTAGCAAACGCCGCCGGATGCAGAAAACCCTTCACAAAACCCGGGATAAAAATCATGCTCGCAGGCTTACCGCCATGCTGATGCTGCATCGTGGAGACCGCGTCAGCAACGTTGCCAGAACAGCTTTGCTGGGGCCGTTGTTCCATTGGCCATTAGATTAACTGGTTTACCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //