Array 1 128880-127879 **** Predicted by CRISPRDetect 2.4 *** >NZ_MDZH01000098.1 Microcystis aeruginosa NIES-98 NODE_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================ ================== 128879 35 100.0 40 ................................... CTCCATCAGAGTCATACTGAACATAGGCTTTATCTGTAAT 128804 35 100.0 34 ................................... ATCGGCTTTATCGGCCGTTACGTGGGCCATCCGG 128735 35 100.0 38 ................................... GGTTATAGTGATAGATTGGGTCTCAATTACCTCCATTC 128662 35 97.1 43 ...............C................... TTTGGCTCCACTGAGCTAAAGCTACCGAGGGGTAGCTTAAAAT 128584 35 97.1 40 ...............C................... CACAGCCATGAGGCCAGACGGTCGACCCCTATAAAAAGGG 128509 35 97.1 38 ...............C................... ACTTCGGGTATTGCTTCCACGTAGGGATACTGCCCTTT 128436 35 97.1 41 ...............C................... AACAAATAGCCCTAAGAAAGCTACGGCTAAACTCTTTGCTA 128360 35 100.0 43 ................................... CATAGAGTTTACACGAATCAAGCTGGGTAGGGACGTTGATTAT 128282 35 100.0 37 ................................... GGGGCTGTAATCAATTGGGTAATTTGAGCGCCGATTT 128210 35 100.0 35 ................................... TTTTCATAGAATTTGCGGAAGTTGCGAAAAACAAC 128140 35 100.0 44 ................................... CGCTTAGGGATATTTCTATCCCGTTGCTGCCCTCAAAAAATCGG 128061 35 100.0 39 ................................... ATATTAATTAACCCTGTAATCGAACTAAAACTAATTCTT 127987 35 100.0 39 ................................... AATGTGTAGGGTTAATTCATGAATTGACCCTACAATTTT 127913 35 74.3 0 T..AA........A..T...T.CC.....A..... | ========== ====== ====== ====== =================================== ============================================ ================== 14 35 97.3 39 CTTGCTTCCAATTCGTGAAGCGTATGAATGGAAAC # Left flank : ATTACGATTCATCAAGTTGGTCATCGTCGAGATATTTATTCTGATTAGTTTTAGTTTAATTACTTCCATTCCCAAAAATTGCTCCTTCCAAAAGCGATCACACTCCTCCTCATCAAAATCGCCAAAAAAGTTGCTTCTCCCAAAAGTGATCGCTATTCCTCATCATCAAAAAGCGATGTCGTGCTGACAATGAGGGACAGGAAAGCAGTACCCATGTAATTTTAATGGACAAGACCCTTAAATCTGCGGGTATTAGTCCATAGGAACAGTGATCAGTTATTAGTTATTAGTTATCGGTTATCAACATTTTTCGCGGGTTAGACAAAATGGCTGAAAATCTAGAGTTTTCGTTGAGGTGCGTCGATGCCTTGTCCAGCAAGGCTTTGAGCCTGATGACCGAGGTGACTATTGACAATTATTATTAATAATGTCTATGCTTTTCAATATCCCACGAAAAATCGTTGTACAATCCTTGTACAGCCTAGCTTTGCAAAGCTAGT # Right flank : GATGCTTAATTAATAAAAATCAATAAAAATAAAGATTGTTTAAGAAAAATTATTTAAAATTAACACAATAATTAGAAATTTAGTGATAGATATAAAAGTACAAAAGAGCCAATTAATCTAACAATCCTATTTTTTTAGCCAGAGATAAGTCTTTTCTAGGTCTTTTCAAGGCTGTTGAATATACCTCTTAAACAATCGAGTTTTCTATAGCTTTATGCCCAAATATATAGCCATCACCTTCTCCCCCGTCCAAAGCTTTATTGAAAAATCCCGCAAATTGAGGGACCTGTACGGAGCCTCTCAGATTCTCTCGGATCTGACCAGTACAATCGTCACCCACCGGCCCGAGCAGTACCACCTAATTAGCCCCGGACTGCTAAACTCCCAACAGGGAATGCCCAACCGTGTTCTCCTGAAAGTCGATAGCGAAATGCAGTCCTCCTCCTCCGAGGAAATCATTGCGGAACTGCAACGAGCCTTTTTAAATCGTTGGAAAAATA # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGCTTCCAATTCGTGAAGCGTATGAATGGAAAC # Alternate repeat : CTTGCTTCCAATTCGCGAAGCGTATGAATGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [88.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 132254-131112 **** Predicted by CRISPRDetect 2.4 *** >NZ_MDZH01000098.1 Microcystis aeruginosa NIES-98 NODE_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================ ================== 132253 35 100.0 37 ................................... AGTTTCCAGATTGCATCCAGCCAGCCAGTGAGCTGGT 132181 35 100.0 37 ................................... AAAAATAGTTTTATGACCATTCTAGGTGGTCTCATTC 132109 35 100.0 39 ................................... CCCCAAATCTTTCAATCTTTTCTCGATCGCTTCCTTATT 132035 35 100.0 38 ................................... CCTTGAATATCAGAATCAATGCGAAAATAATCTAAATC 131962 35 100.0 40 ................................... CAAATGTTCTGCAATGATCGCAAGAACTTCTGAACGCTTG 131887 35 100.0 44 ................................... TTCCAGTAAGGACTGGTTGGGATTCTGAAGTTTTTCAACTTCAA 131808 35 100.0 38 ................................... AAAATTCTATTAGAATCCTTCCTAGGGCCTTGAAACTT 131735 35 100.0 40 ................................... TGCACGAGCAGCTTGTAGCTGAGAAGTGCGTTCCGACTGC 131660 35 100.0 36 ................................... AGGCCAACGAACCCCAGGATCGGGTGACCCAGGACA 131589 35 100.0 36 ................................... AAGAACATCTATGTCTATGTCCTCATGGTGATGGTG 131518 35 100.0 38 ................................... GTTATTCAACGTATGCTCGTAAAGGCCTCCTCGCATAC 131445 35 100.0 42 ................................... CTTGGTTGCAAAAGTGCGGAAACACCAGTTAAAGCTAGGCTA 131368 35 100.0 37 ................................... TAACCAGCGATGTCTAAGACTGTAAACATAGTAAAGT 131296 35 100.0 38 ................................... AACCAAGACATGAAATACCACCGCTTTGCTTGGTGGGA 131223 35 100.0 42 ................................... CCTGATTATCCGTTGTTATCGAGACATCTAGGTAGATGGCCA 131146 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ============================================ ================== 16 35 100.0 39 CTTGCTTCCAATTCGTGAAGCGTATGAATGGAAAC # Left flank : AGGAGGTGTATATTGGTAGCGCCGATTGGATGACGCGGAACCTGACTCGTCGCGTGGAAGCAGTGACACCCATTGATGAACCAGCGATCGCCAAGGAACTGGAAGAAATTCTCGGCATCATGTTGTCAGATAACCGACAAGCATGGGAATTACAATCCGATGGCAGTTATATTCAGCGTCGTGCTGACAATGAGGGACAGGAAAGCAGTACCCATGTAATTTTAATGGACAAGACCCTTAAATCTGCGGGTATTAATCCATAGGAACAGTGATCAGTTATTAGTTATTAGTTATCGGTTATCAACATTTTTCGCGGGTTAGACAAAATGGCTGAAAATCTAGAGTTTTCGTTGAGGTGCGTCGATGCCTTGTCCAGTAAGGCTTTGAGCCTCATGACTGAGGTGACTATTGACAATTATTATTAATAATGTCTATGCTTTTCAATATCCCACGAAAAATCGTTGTACAATCCTTGTACAGCCTAGTTTTGCAAAGCTAGT # Right flank : AGAATGCCAGGGATCAATCCCATCTCATCGGTTAAGAAAAATCCGAGATTTCAGCGAGATTATGCGTCAGTGGGGACAAAAATTTCAGAGGGACTTTAACCAGACCGAACTCGGCAGAATAATTTATGCGGGAGGAGATGATTTTTTGGGCATCGTTTATAATAGCCAATTTCCCGGTCCACAACTCGACTCGATCGATCTCGATCGAGTTCTCCACTGGCTACAAACTCCTCATAAGTAGGGTTTGCTGAATAAATGTGAAATGTAGGCAAGGTCAGGGTTTTGTGGCTTTTCTCGTGAAACAGGTGCAAGATTTTGAGAGAATCGTGCTTCAAAACCTTGCGTCTTCATCGGCCCGCGTCCCGTACTTTTTCAGCAAACCCTAAGTAGCGATCGCACTTTCAAAAGACCAAATAATCACATTTAAAGGATTTTGCTTTAAATCTTTTCATAAGTAGGTAGGCGTTAAAAGCTGTCAGATGCCCCCCTTATTAAGGGGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGCTTCCAATTCGTGAAGCGTATGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 51620-53080 **** Predicted by CRISPRDetect 2.4 *** >NZ_MDZH01000147.1 Microcystis aeruginosa NIES-98 NODE_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================= ================== 51620 35 100.0 38 ................................... CTTTTGATTAGCAGACATAGTTCAATCTACAGAATTTT 51693 35 100.0 45 ................................... CATTACTGATTACTGATACTCTATCCACCCTCCCATGGTAGATTT 51773 35 100.0 43 ................................... CCATCTTTGAGATAAGGCAATAGACAGTTACGGACAGTTATTT 51851 35 100.0 37 ................................... CGCCGGAAAAAGCGCTTTTGGTTGTATCTGGTTTTAA 51923 35 100.0 40 ................................... CGATTGTAGGCAAATATCGCTGATTACTTCCGATAATTTT 51998 35 100.0 38 ................................... CTATCCTCAATCCCCTTAATAAACCCTTCGCTGGTTTC 52071 35 100.0 39 ................................... CATAGGAATCTCAAAAGTTGCTGACACCTCCCCTTTTTT 52145 35 100.0 38 ................................... CAACGGTTGTCGGAAGAGCAAACTAAAGAAATCTTTCA 52218 35 100.0 39 ................................... AATTTTCGATCAGATCGGTATTATCGCTTAATATTTTTA 52292 35 100.0 38 ................................... ATCGCCCTTGTCGCCCTTAGCACCCTTGTCGCCTTTGT 52365 35 100.0 40 ................................... ATTGAATTATAGATTCACGAATAACTGAATTAAAATAGCA 52440 35 100.0 44 ................................... ACTCATAATTGTTACTCCCAGGGCTAAAAGGTAGATCGACGCGA 52519 35 100.0 40 ................................... ACTGCGAAACTACTTTAAATTTTGTCTGTATCACAAATAG 52594 35 100.0 41 ................................... ACATCTTTACCTCTTTTTTTCAATGAATGTCGTCGGCGTTT 52670 35 100.0 42 ................................... ATTGATTAGATACCGAAAGGAATCGCCGCGCTGGACTTGCTT 52747 35 100.0 38 ................................... ATTAGGGGATTTTCCCTAATTGTACACACCCCACCCAA 52820 35 100.0 39 ................................... ACTCCGCAAACTCAACCTCAATCCCATCAAACAAATCAT 52894 35 100.0 38 ................................... ATTCCATTTGGATCAAATCTTCCAAAGCCTCAAGTTGA 52967 35 100.0 44 ................................... ACCCTTCCTTTCGATTTTTGGCCTTGATAGTTACTTCGATGGTA 53046 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ============================================= ================== 20 35 100.0 40 CTCTCTACTCGCTAGAGAAATTAATTGAATGGAAA # Left flank : TACTTCCGTTAATGCGTTGTGATCTTTCCCCGAATGGTAATTTTCCGAGGGATCGAGGGTTTGATAACCGACTCCGGGGTGTCGGACGAGGGTGGCGATCAGGAGCATAAGTCGCTGGAACTCGCGACTATCTCGTTCACGCAGTGTTCTTTCCCTAGGGGATTTGGGGTGCTGAGTCATACAGATGCAATCGGTTCAGTCAAGGGGAAAGCCGATATAAATTTACTTCACTCCGAGGGCTAGAAAATCCGATCAGGACTGGAAAAATTAGCCGCTCGATCGAGGGGTTAAATTATTGGCTTTTTAGGGTATCATCGACTAGCGACGGATAGGGGTGGGAGCAGATAACCTCGGTTTCCGGTAAAATCCCTCGATCTACCACAGGATAAGGGTTTTGTGGTTTATGGGGTTGACGGTGCGACCGTATCTAGCTATAATTAACTTATCCGTCGCAACTGGCTTCCGAACCCCAATCCTGTTCGGACGTTTGCCTACCGGCT # Right flank : ACTTCCTAGTTTGGTAGGGTTGATTCATGAATCAACCCTACTTTCTCTCTACTAGCACTTAGACATTAGCTGAATCTCCCCCAATCCCTTTCCTGTTGACTCTTGCAAAAGTGCCTCATTTCAATAGGCAATTTAAATGCGCGGGCAGCTTATTCTATATGGTAATGTTTAATTTTATTCGCGTAAAAGTTGCTTATGTCCTTACCTGAACTCCCTCTTCATCTTCAATTAACCCAAATGGTTTCGGGTTACTGGCTATCTCAGGCCATCTATGCTGCGGCTAAATTGAGTCTAGCCGAGCATTTAAGCAAAGGAGCGAAATCCTGTCAAGATTTGGCCTCCCTAACTGAGACTAATCCTGCTGCTTTATACCGACTGATGCGAGCATTAGCTAGTGTAGGAATTTTTCAAGAAACTGAATCTCAACAGTTTATACTAACTCCCTTAGCCGAACATTTATCTAGTGACCATCCCCGGTCAGTAAAAGCGACAGCGATTAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTCTACTCGCTAGAGAAATTAATTGAATGGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.30,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 56270-56963 **** Predicted by CRISPRDetect 2.4 *** >NZ_MDZH01000110.1 Microcystis aeruginosa NIES-98 NODE_24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 56270 36 100.0 36 .................................... ATTAACAGCGCAACTTGACAAAGAGATGAGTCTTAT 56342 36 100.0 35 .................................... AAGTTTGAGATCATGAACGCAATGGGTGAGTATGG 56413 36 100.0 35 .................................... AGATCTGTGTGACAATCTTGGTTTACGACCAGAAC 56484 36 100.0 38 .................................... GGAGCTTTCCATGAGCCGAATATTGTGGTTTATGTGCC 56558 36 100.0 45 .................................... TCGGGGTATCCCGATTATTCAAGAGTTTGCAAAGCAGTTTGGCGT 56639 36 100.0 36 .................................... ATGCTCAAACAGCAGCATATTTAGGAATGCAGCCAA 56711 36 100.0 33 .................................... ATGGGTGACCTCATAATCGATTCTATGATGCGT 56780 36 100.0 36 .................................... CTCGCCACTATCGAAAATTCGTAGCGGAAGGAAGAG 56852 36 100.0 40 .................................... TTGATTACCTACAGGAGACAGGTAACACTGTCCCTCGGGT 56928 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================= ================== 10 36 100.0 37 GTTTCCAACTAATCCTATTTGACCTAATAGGTAAGG # Left flank : GTCCTAAGTAGGTAGGCACAATTATTTGGGCGAATGCAATTCGCCCCTACAATAATAATATTATTATTGTGCCAATGGTAGGGGCGCATCGCGTGCGCCCAGAATGTCCTAAGTAGGTAGGCACAATTATTTGGGCGAATGCAATTCGCCCCTACAATAATAATATTATTATTGTGCCAATGGTAGGGGCGCATCGCGTGCGCCCAGAATGTCCTAAGTAGGTAGGCACAATTATTTGGGCGAATGCAATTCGCCCCTACAATAATATTATTATTATTGTGCCAATGGTAGGGGCGCATCGCGTGCGCCCAGAATGTCCTAAGTAGGTAGGCACAATTATTTGTAGGATGGGTTAGCGGTAGCGTAACATAATCGGGCGTTGGGTTTCATGCTTCAACCCAACCTACGTTCATTTTATATTTAATTCCACCCACCTACTTATAGATATTTCGACAAAATTGAAAGGCAGAAAAAGGGTTTATAAAGAAACCCTTTTTCTA # Right flank : GAGTACCCCTTGGAAAGTCTCATCGAGAGGGGAAGACAGACCCCCAAATCGACGCACCTGCAAAAAGAGGGTTAAAAGGTGGTATTGGGGGGGGTAAAAGTCCCGATACCAAAGGGTAGAACCCTGACTGGGAGAGCAATCGACGCACCTCAACCAGAGAATCGGGGTTTTAGGTCGGGGAGGGGGTGCATCGATTTTCAGTCAAGAGTTAGGGGACAAGCTAGATGATATAGAGATTTGGGGGTGGTTGAGGAGGAGAACCTCCCATCACCAACAATCTAGAGACAGCTTCTTCGGAAATCCCATAGAAGCGCACATCATCCTCTTGAGGATTGACCCTTTCTACTACTTTAGCGTACAGTTTCCGCCTCTCGATGTGTAATTAATTTTGCTTAAGTAATTATCTGTAATTAAGTAGCTGGTTATAATTAAATTAAAAATGGATTTTAGGTTCGATCCCCCCTGCCCCCCTTGATAAGGGGGGTGCCGATAGGCGGGGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAACTAATCCTATTTGACCTAATAGGTAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.70,-4.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 88774-88307 **** Predicted by CRISPRDetect 2.4 *** >NZ_MDZH01000170.1 Microcystis aeruginosa NIES-98 NODE_16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ==================================== ================== 88773 38 100.0 32 ...................................... TGAATCCTAACTCTTTCCCTAAATCAGCAGTA 88703 38 100.0 35 ...................................... ATCGCATTGATTGAAAGTGTGGTATGATAGTAAAG 88630 38 97.4 33 .....................................G GTTAATTTTTTCTAAATCGAATCGGTACGTCGG 88559 38 97.4 36 .....................................A GATTAATTCTCTTAGTGCCGCTGGTGATTTTTTTTA 88485 38 100.0 33 ...................................... TTAAAAATAGCTGCAAGTTAACCCTAAGTCCTT 88414 38 97.4 32 .....................................A GGGGTTAATGGCGTTTCGGAGCGCCAGTTTTA 88344 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ==================================== ================== 7 38 98.9 34 GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACT # Left flank : GAGGAGGTGGAAAGAGCCGTAAACTTGATTAACAATCGTCCTCGAAAATGTCTTGACTATCGTACCCCGAATGAGGTATTCTATAAAGGTAGATCAGACAGTGATGCAATTCAGACTTGAATTGGCCAT # Right flank : GGAACTTGAAACCTTCTAGTCTATTAATTTCAAAATGAGAATTGCTGTCAGTGAGTTTATCGAACTGCTTGCGTCCAAAATATCCTATAAATTAGAGGAAGTATAAGCTAATTTGTATTGATAGTAAATCTGTTTTTAATAGTATGAGCAACTCTCAATCGCACGCTAAAAACCTTCTCCCTTGTTCCTTCTCCCCACTTCCCCATACCTATTACCTAGCATTGTTAGTATTCTATAATACCAATGCTTAGGAAACTATAAAGAAAATCCCAAGATTAGGCGAGTCCCTTGGCGAAAAAGGCTATAGTAGCATAAAATCCGTAATTTTATCTACAAAATTGTTATGACAGTTACCAATAGACAAGAGCTAGAAGAACTGATTCAACAGGTGAAAAAAGCTCAACAACAATTTGCCAACTATAGCCAAGAACAAGTAGATCTTATCTTCAAAAAAGCGGCATTAGCAGCCAACAACGCTCGCATTCCCTTGGCTAAAATGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACT # Alternate repeat : GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : NA // Array 1 17589-160 **** Predicted by CRISPRDetect 2.4 *** >NZ_MDZH01000288.1 Microcystis aeruginosa NIES-98 NODE_18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 17588 37 100.0 34 ..................................... ATTCGGTGAAAATTCATACCGATGTGTATCGACT 17517 37 100.0 35 ..................................... ATTTGATATCCGATTAGATCGGTCCCTGACTCAAA 17445 37 100.0 36 ..................................... TCAAGCAAAAAGCACCCTATAAATTTGTCCGACCAA 17372 37 100.0 37 ..................................... TTTCCTTGTGGGTTGATTGATCGAAAAAGGCTATCAG 17298 37 100.0 36 ..................................... ATGATACTTTCTACCATCCCAGAAGCCCTTGATCTT 17225 37 100.0 34 ..................................... AACCCCCCGTTAACCAAGTTCTACCAAATTTAGC 17154 37 100.0 34 ..................................... CAATTATTACGATCACCCGTTTGTTTGTACTAAA 17083 37 100.0 35 ..................................... TTCCGTATTAAAGTCTTTCCACTTACCAGATCCGC 17011 37 100.0 35 ..................................... AAAGAGAAGTCGATCGCTATGGCTTCGCGGATCAT 16939 37 100.0 34 ..................................... ACCATCATGAATGCTGATTATTTTGCATAATTTT 16868 37 100.0 35 ..................................... CGGCGTGCGATCGAACGCACGGGCCAACTTCTAGG 16796 37 100.0 33 ..................................... CGGCGTGCGATCGAACGCACGGGCCAACTTCTA 16726 37 100.0 35 ..................................... AACTATTTAAATGACAAACCTTCTCAACAAGCAAA 16654 37 100.0 35 ..................................... GCGACCGCGCCGCCCTACGGGACGCGCTCCCAAGC 16582 37 100.0 35 ..................................... AAGGCAAGATCTTCGGCTTTATCCTGACAGTGCTG 16510 37 100.0 41 ..................................... CTGATCTAGCAAAGGTTGCGCTCGCTTGCCAGTTGCCGGTG 16432 37 100.0 37 ..................................... TTTAGCCTTAAGAAAATCCTTAGCCACATCCCCGAAA 16358 37 100.0 34 ..................................... CTAAAGCCACTTGGCTATCAGGGGCTAATTCGGG 16287 37 100.0 35 ..................................... TTTTCCCGTGCAGTTTGGCAATTCCCCTTCCCAAA 16215 37 100.0 36 ..................................... AAAATTGTGCCCGGATCGATTCTGGTCTCGGTGGGG 16142 37 100.0 39 ..................................... CACTATTAAAAGAGTATCCAAAGCCATCGCGGATTCCCC 16066 37 100.0 34 ..................................... CAAATCACGATGGAGTCGTGGGATTTAGATAATT 15995 37 100.0 40 ..................................... AAACTTGGCTACGGCGCGGGTATTTGGTGGCTAGTTCCAA 15918 37 100.0 34 ..................................... TATCTGCCATGAGTTTTAGTGAAGAAAGATTAGA 15847 37 100.0 36 ..................................... TGCCAATCCTGCCGGGATTAAACGGGCGGAAAAAGA 15774 37 100.0 33 ..................................... TCCGATGATTGGCATTGGGGGCATTTCATAGTT 15704 37 100.0 35 ..................................... TTGATGCAGCCCTAGGCTGCTATTTTCTGTGTATT 15632 37 100.0 35 ..................................... TGATTTATTGGTTTTAAGAAAGGCGATCGCATAAT 15560 37 100.0 34 ..................................... CCCCGCAATTGCTCATCTGATAGTGAAAATTCGC 15489 37 100.0 34 ..................................... CCTGTATCTGCTCGATCTTTTCGGCGATTACATA 15418 37 100.0 34 ..................................... AAACTCAGCAACCTCAACGACGCTTTTACCAAAA 15347 37 100.0 35 ..................................... AGGCACTTCGGAAAATGCCGCCAGTCACAGATAAA 15275 37 100.0 39 ..................................... ATTGGCCTTGATGTAGTAGCCTTGTCTGTCGGCGATCGG 15199 37 100.0 36 ..................................... TCCCCCACTATTTTGCGGGTACTCGATATCCCTTTG 15126 37 100.0 36 ..................................... TGATTAATGGGTAGTTGACTTAGGTAAGTGACTAGG 15053 37 100.0 36 ..................................... ATACGACTTAGGATTAGGCAAGCTTGCGGGGTGAGC 14980 37 100.0 34 ..................................... TCCCGTGGCACGAGATTTAATCCAATCTTTTGTG 14909 37 100.0 33 ..................................... TGATTTAGAGAAAGGCGATCGCATAATTGCAAG 14839 37 100.0 34 ..................................... CCCGATTCGAGAGCTATTTCTTTAATCGGATCAT 14768 37 100.0 34 ..................................... AAGGAAAAAAGCCGCAAAGGTCCCCGGCGGGCAG 14697 37 100.0 34 ..................................... TAATATGACCGCACCACAACAAATTTTTCCAGGA 14626 37 100.0 36 ..................................... TTCAACGGGACAGCCGTAGATATCCGCCTTCCTTTT 14553 37 100.0 35 ..................................... CTGAGTGGTGGCAACAATGGAAGCTTTGGGAAGGG 14481 37 100.0 35 ..................................... TTTAGCAAAAAATTTTCTAGCCTCACTAGGACTAC 14409 37 100.0 33 ..................................... TAACAAAAAAATGGATGCTCGTGTTGCTTTAGA 14339 37 100.0 41 ..................................... ATGACAACTTGCCATAGACCGAAACTTCTCAGGTTCTTGTT 14261 37 100.0 35 ..................................... TGGCTATACAAGTATTTCCACAGGGTTTACCAGTA 14189 37 100.0 35 ..................................... CAGTCCCCGGACAAAAAAACCAACTCCAACCAGAC 14117 37 100.0 43 ..................................... GGAACCCTTACTGTTGCCTAGGATTAGGTCCAGGGTAGTGTTC 14037 37 100.0 38 ..................................... GAGCGCAATAAGCAAGATAATTTTACTCGGCCTAGAGC 13962 37 100.0 35 ..................................... ACGCTTGGGCGGTCCGAACGCTAGAGATGGGATTA 13890 37 100.0 36 ..................................... ATCAGGCGCTTCTACCCCCTCATCTGGTAGCTCTGG 13817 37 100.0 36 ..................................... TAGTTGCACTGCTCATTAGCTTTTCCCTCCATAATT 13744 37 100.0 40 ..................................... AAGTAGAAGAAATGGCCAAATCGGTCAATCCGACGACATT 13667 37 100.0 34 ..................................... AAATTTGGATTATCATCAAGAACATTAAATACCT 13596 37 100.0 35 ..................................... CTCGATTTTAATCTTAATGGGAAATTGACCAAATA 13524 37 100.0 36 ..................................... TCCCACATTTATGTGACCAAGCTGCGCTATATGGCT 13451 37 100.0 35 ..................................... CGTCTCTCCCGGGCCTCCCGTCGCGTCCGTCTCTC 13379 37 100.0 35 ..................................... TTTCTTTTTCTTTTAAAAGCTTTTTTTCTTCTCCC 13307 37 100.0 35 ..................................... AAATTAATATTTGCTAATGGAACCCAAGACCCTTT 13235 37 100.0 35 ..................................... GGTTTCTCGGATTTCTGAGAGCGATCGAACAATAG 13163 37 100.0 43 ..................................... GAGAATCGCGCAACTCTTTTAAGGCAGTCCCAGCTTCATAAAA 13083 37 100.0 38 ..................................... TCATAAGCTTTCAATAGCAGGTTCGACTCCTGTACCCG 13008 37 100.0 35 ..................................... CTTTTTTTTATTATTTATGGCTACCAAAAAAAATC 12936 37 100.0 34 ..................................... GGCTCGTAAAGCTAGTAACATTTGGTCTATTCAA 12865 37 100.0 37 ..................................... CACTGTTCGGTAGGCTTGCCAAGAATAAACTCCGGGG 12791 37 100.0 36 ..................................... ACTATTTATTATACTGCTCCGCCCGTTAATAGAATT 12718 37 100.0 34 ..................................... GGGGACAAGCCATGAAGCGATCGATAGATCACTC 12647 37 100.0 36 ..................................... CAAAAGTCGGGCATTCAGGTTAATAATCGGTGGTAC 12574 37 100.0 35 ..................................... TTACTCCTAATTGTTTTGATTTCTTGACTGACAAC 12502 37 100.0 33 ..................................... GAAAATATGGGATTTAGCCCTAGCCTTGTTTGC 12432 37 100.0 35 ..................................... TCAGAAATATTACTGCAACGGCCACTATAAAGCGA 12360 37 100.0 33 ..................................... GATCTTCCTGCTTCGTTTCCCCGGTGAGCAGTT 12290 37 100.0 38 ..................................... AAAACCGGCATTTTCCTAAAAATGTCCAAAATTGAGCT 12215 37 100.0 38 ..................................... TTAGTCTTGCCATTTTTGTCACACCTTGTCACACTCTT 12140 37 100.0 35 ..................................... TTATGTCTCGCCCCGCGAGGAGTGCCGGGAAGCGA 12068 37 100.0 38 ..................................... TCCCTTGTAGGATAAGAGCGTTGTCGAATTTAGCACCC 11993 37 100.0 36 ..................................... GTTGGACGAACTCTTTTAATTCCTTACTGACCTGTA 11920 37 100.0 39 ..................................... TCTATTGAATTATGGCTAATTGTGTATTTCGAGGTCCAA 11844 37 100.0 37 ..................................... GATAAATGCTCAATTATTGCTAATGTGAACATGATTT 11770 37 100.0 38 ..................................... CCAAACCGGCAAGATCGGCAATCTTGCAGTAAGCTAAG 11695 37 100.0 35 ..................................... AAGGCCATGAGCCTAAAAAAATACCTCAACAATTG 11623 37 100.0 35 ..................................... TCAATAGTTGAATTTTTGCCGATAAAAGAGATCGA 11551 37 100.0 37 ..................................... TTTTGGGCGGCCCCGATGGACTCTATCGCATTCTCAG 11477 37 100.0 35 ..................................... GTCTATATGAAGGCTATAGCGAGATTTTCATTGAT 11405 37 100.0 34 ..................................... TTTTCGGTGGCCTCTGGGCGCTTTGGCTCCGGGC 11334 37 100.0 35 ..................................... ATAAAAATAGTGTACATTTTTCAATCGATCAACTA 11262 37 100.0 36 ..................................... CTTTTGTACTATGCTCGGCTTTTTCTGCCGGGCATT 11189 37 100.0 33 ..................................... GTAGTCCAGAACCCAGTCCCAGCAAGGGCGACA 11119 37 100.0 34 ..................................... ATTCGATTTTCTGATAAGCAAGAAATTTCCCCGA 11048 37 100.0 35 ..................................... ATGCTTTGGGTGGGAAGGGTCTGCTAGGGGAATAT 10976 37 100.0 36 ..................................... CAAGATGCCCAAAAACAGGCAGAAGAAACAGTTAAG 10903 37 100.0 35 ..................................... TTTCTGCGTGACCAGTTGGGAGCAGTGAACGAACT 10831 37 100.0 35 ..................................... AGAGGAGTGGATAGCTAGAGTGGGGCCCACCCCAT 10759 37 100.0 35 ..................................... AAAGATTTTTGGTGTAAATATGGCTGGCAAAGGAG 10687 37 100.0 34 ..................................... GATATTCCAGGACAAGCAACGGCGGCGACTTCTT 10616 37 100.0 37 ..................................... CCAAGGGTAAGCATAGCCAAAGTTTCAGCGAGAAATA 10542 37 100.0 36 ..................................... TAAGTGTCGATTAGGTATGAGCGATTTTCGGGATAC 10469 37 100.0 34 ..................................... AAAATTCTCCCAATCCCAGCGAAATTATCAGAGC 10398 37 100.0 34 ..................................... GCGCTATAGCGATCTGATATTCGTATTCTCTCTG 10327 37 100.0 35 ..................................... ACTTATCATTTACCGATAAAATTTGCAGATTTAGT 10255 37 100.0 35 ..................................... GAAAAAATCTTAAAGATAGAAGCCGCTATCGAAAA 10183 37 100.0 33 ..................................... CAACTTTACGCGGCAAACTAAAAAGTAATTCAA 10113 37 100.0 36 ..................................... TTTCTTTTTTTTCCTCTATAGTCCATCGACATTATC 10040 37 100.0 35 ..................................... TTGGCTATTATCCATCCTTGATCATCACCATCATC 9968 37 100.0 36 ..................................... GCTTCCAAGTTTCTATTTCTGAAAGAAATAGATCAG 9895 37 100.0 36 ..................................... TTCCATTGCTACGATGAAGCAACTACTCAAAGAACC 9822 37 100.0 42 ..................................... ATTTAACCCTGATGGTGGTGGTGTACCAGTTAAGAATTCTGT 9743 37 100.0 34 ..................................... AAAAGCTGGCGCGGGCGCAGTAGCGGTAACGGGA 9672 37 100.0 33 ..................................... TTCCCCTACAACGAACCTACATCGGAGGTAAAG 9602 37 100.0 34 ..................................... AGAGAATCAGTGGCAAAATTTTGCCACACGAGGA 9531 37 100.0 34 ..................................... TATGATTGAACTTCCAAGTCTTTAGGAGTAACTT 9460 37 100.0 36 ..................................... AAGCGAGTTAGAGACCGTAAACATAAGAGTAAACAG 9387 37 100.0 34 ..................................... TTGTCACGCCTAACTCGGCTGCTACATCATCCTG 9316 37 100.0 35 ..................................... CAGCTTTTGAATCAGCTCCCCTTTTGATTCCGATA 9244 37 100.0 36 ..................................... TAGTCTCGTTTCGTTTCTTCAAGATAAAGAGCGATC 9171 37 100.0 35 ..................................... AACGCATAAGTAGTATTAATAATATTAGGGTAAGG 9099 37 100.0 36 ..................................... TGATGATAGCTTTGGCTCTAATCTAGAGTCTGCAAA 9026 37 100.0 42 ..................................... AACCAGACTGGACTACGCGGCAAAATTTGGGAGAACGGCAAA 8947 37 100.0 33 ..................................... TTGCCCTCGGACTCGGCCTTTGCGCGGATTCGC 8877 37 100.0 34 ..................................... TTGCGTTTTCCTTTTAGCACCAATTCAATTCGAT 8806 37 100.0 34 ..................................... GCTTTTGTAGCAAGGGGTAGAGCCACTCCTGCTC 8735 37 100.0 38 ..................................... GATCACATTGCCACTAATAGTTAGTGTGATATTCGTTC 8660 37 100.0 34 ..................................... TTAGACTTTGTAGATATTGTCAATGCCTTATAGA 8589 37 100.0 34 ..................................... ACAACGCCATTATTATGCGATTAAACCGGCTATT 8518 37 100.0 34 ..................................... GGATGTTCCGCCGATGGTAAAGCTGAAATCGCTC 8447 37 100.0 34 ..................................... ATGGTTGATGCCCTTGACGGGGTAAAATCTGACA 8376 37 100.0 34 ..................................... AAAGCCGCAGAGCAAAAAGGTGCGCGAATTTATC 8305 37 100.0 37 ..................................... CAATACAGGGTACAGGCTATCGAACGATCCGACTCAT 8231 37 100.0 34 ..................................... GAATTTGATCGGATAGCCCGCTTTATCAAGCCGA 8160 37 100.0 41 ..................................... ACTACCGCAAGCTTCTAAGGATTGCATCCATGCAATAAAAA 8082 37 100.0 38 ..................................... CTTTTTATTTGATAAAAATTGCTCCTAGCTATTGTGAA 8007 37 100.0 34 ..................................... TTTGTGTGCCACATCTCGCAGTGGCAATGGGATT 7936 37 100.0 37 ..................................... TTCGATCGCTTCCCCCCTTCCCCCTTCCCCTTCCCTT 7862 37 100.0 37 ..................................... TTAAAACCCTTGCTATATCTTGATTACAGGCATTCAG 7788 37 100.0 35 ..................................... TTGAGTATCGGACGGCCTCCACTTCTTAGATCCGC 7716 37 100.0 41 ..................................... ACTACACACAGCCGAACTGCAAGTGATAATTTATCTGATCT 7638 37 100.0 35 ..................................... TTTCAAGGACCAAAAGGCGATCCCGGTCAGCCCGG 7566 37 100.0 35 ..................................... TTTTCTGTGTTCCGCCCCAAAGGATTTACAAAAGG 7494 37 100.0 35 ..................................... AAATCACGAACTACTAGGGGATGCTTGACTAAGTA 7422 37 100.0 34 ..................................... TCAATCCTTACCCCATGATAACACATAAAAAGGT 7351 37 100.0 39 ..................................... AATAGTTTAATTTTGGCTATCAGTTATCAGCAATAATTA 7275 37 100.0 35 ..................................... CCGTATCTTTCTTTATAATCACCCTCTACTACAAA 7203 37 100.0 37 ..................................... TGACTCGTTCTTTCCCTATCCCTAATTCTTCGGTAGT 7129 37 100.0 35 ..................................... AGAATCGCAATTATTCCCCGCAATTACTGAGGAGA 7057 37 100.0 36 ..................................... ATGCCAATAGTTAATGGTACTAGCAGGAATATCCGT 6984 37 100.0 35 ..................................... AACTTCGGTGACTGGCAGTGCCGAAGCCGGAGCTA 6912 37 100.0 35 ..................................... ATGTTGGCGACTCGAATCTCATTATTAGAATCGGA 6840 37 100.0 35 ..................................... AGGGGATTGGAGCCAACCAGACGAGATTATATTTA 6768 37 100.0 34 ..................................... TTCCGGGGAAATTGATCTGGCTACTTATGAATAC 6697 37 100.0 36 ..................................... TACAAGAACTGGGGGAATTTATACCCCTGAAGAGAT 6624 37 94.6 36 .C.....................T............. ATAAGTTTTACTCCTATTGAGTTTCATGCTTTTATT 6551 37 94.6 34 .C.....................T............. TTTGACCAATCCCGACAAAGCAGGGGAATCCCTC 6480 37 94.6 34 .C.....................T............. AAAGGATTAGCGATTAAGGGGCTATCTTTATTTA 6409 37 94.6 34 .C.....................T............. CAATCATCGAAGCGATTTTCTATTTTTTCTATTC 6338 37 94.6 34 .C.....................T............. CTGGCGATCCTACTGTCGCCAAGGCGATCCTAGG 6267 37 94.6 42 .C.....................T............. AAGCTCTTCAATTCTTTGGATTCCTCCGAGTTTGCAGCACTA 6188 37 94.6 34 .C.....................T............. AAGCTCTTCTGTATTTTTTCGGTATCTAAAGCTT 6117 37 94.6 35 .C.....................T............. CGGATACCAGATAAGGTTAGAGAATGTCAGCGATT 6045 37 94.6 34 .C.....................T............. ACCCTTGAGTCACCCCAAGACTCCGATCACCCAG 5974 37 94.6 35 .C.....................T............. CGGTTGAATCTTTATAGAATACTTCTAAGTATTTT 5902 37 94.6 33 .C.....................T............. AGGAAAATACTCTATATGGATTAAAGGAAAAGT 5832 37 94.6 34 .C.....................T............. AAAAAGTTTGGAATCTAGATAATTAGCAAATGGG 5761 37 94.6 34 .C.....................T............. AAGGCAAAGCTTGTAATTAAAGAAGTTGAGTCTC 5690 37 94.6 35 .C.....................T............. CTTCTAACTCACGAATACGGATGGATAGTCGAGTT 5618 37 94.6 35 .C.....................T............. ATATTACCGATGGATTTAATCGGGCTATCGCTCCT 5546 37 94.6 36 .C.....................T............. TATTTACTTGATCTTATCTTATGACATTCTCCCATA 5473 37 94.6 39 .C.....................T............. GAGTCTCTTTACTTAAGACTGGATGAACTCCAAAAAATG 5397 37 94.6 37 .C.....................T............. GTGGATGATAGTCCCTTGAGATGCTAAAAGTAACCAA 5323 37 94.6 37 .C.....................T............. TTTTGTAAAGTAGTGTAAGATAAGAGTATCTTATCAG 5249 37 94.6 35 .C.....................T............. TTCAGCAAATTGAGGATTCTTTTTTATAAAATCAG 5177 37 94.6 35 .C.....................T............. ATTCTTATATACCAGTCTAAAACCCTTGCTATATC 5105 37 97.3 35 .......................T............. GTCAATGCTTGACGATTTATACCTCGATATCTCAG 5033 37 97.3 33 .......................T............. GATTTTAGACTCATAGCAGTAACTCGTTAACAG 4963 37 97.3 34 .......................T............. CAATTAGGCGCGATCGATGAGGCGATCGATACCC 4892 37 97.3 34 .......................T............. TGCTTTTGTCCCTCCCCCCCCACCATTAGCTCCC 4821 37 97.3 35 .......................T............. TACCGATACAGCTTCTGCAATTAAGGAAGTAGAAG 4749 37 97.3 33 .......................T............. AATTACTTGCATACTAACTTAGCAAGACTTTTC 4679 37 97.3 33 .......................T............. AGGATTGCCATTCAGCCATAAATCTTTGAGTTT 4609 37 97.3 36 .......................T............. AAAGATGATATTGCCTTAATCACACCATTAAAAATA 4536 37 97.3 34 .......................T............. AATAATATTTGTATTAATTACATCAATCTTAGGA 4465 37 97.3 35 .......................T............. AGAAAATTTTCATTTTTCAAATTTTAAGGGCGAAA 4393 37 97.3 33 .......................T............. AACTGATAAACCAGTTTTCGCAATTCGTCAACT 4323 37 97.3 34 .......................T............. CGATTTCCTCAGTAATTGCGGGGAATAATTGCGA 4252 37 97.3 34 .......................T............. TGTACCAAGAGGTAACAATAATTGCCGAATCCCA 4181 37 97.3 35 .......................T............. GCTAGGCTAATTCGATTTGGCCACTCCTGGCAAGA 4109 37 97.3 34 .......................T............. ACGCAGAAAAACTATCCTTGCCTCTAAGGTATTT 4038 37 97.3 44 .......................T............. AACATTAACTGGCTAAATCCCAGCCAATCAGGATTGTTCCAATT 3957 37 97.3 38 .......................T............. AGCTACGCTTAGTTTTGAGCCAATAATTTTGGCTGATA 3882 37 97.3 34 .......................T............. AAAATTTGCTAAATACCTAGCAGTTTTGGTGACT 3811 37 97.3 36 .......................T............. TCCCGATAAAACAATAACCATTCTCTCCATCATCAC 3738 37 97.3 34 .......................T............. AGTACCCTGTACTATTCATGACTGGTACAAAAAT 3667 37 97.3 36 .......................T............. AGATTTACCCCCCGTGGCTCGATTGAATTTCGAGCA 3594 37 97.3 36 .......................T............. TTCCTGATTCTCCATTGTGGAATCACTTGCCAGAAT 3521 37 97.3 34 .......................T............. AAAACCCTTACCCTGATTGGGTTAGGGGAAAAGA 3450 37 97.3 34 .......................T............. TAAAGGAATCAGTACCCACAGCTTCCGGCGAACT 3379 37 97.3 35 .......................T............. GTGATTTTTGGGAACTTCACAAAAGTTTAACATAA 3307 37 97.3 37 .......................T............. CTAATTCGCGCTTTAGATATAGATATTCTGATTCATT 3233 37 97.3 35 .......................T............. AATTAATCGATTAGCTAATGAATCGGAATATAGTG 3161 37 97.3 34 .......................T............. AACCAAAGTTCCTGTGATCACCAAAAAAGGGCGT 3090 37 97.3 36 .......................T............. AAGGGGAATTTAACTATGCGATTTAATTTTGATGGC 3017 37 97.3 33 .......................T............. CAAATAATCAATCTATCTCCTTGATTCCTTCGA 2947 37 97.3 35 .......................T............. TTTTTCGGGGATTACTGATATAAATAAAAGAGAGG 2875 37 97.3 37 .......................T............. AACCCCGTTGATTTTAAGAGAGAAATAACCTGCTTAT 2801 37 97.3 36 .......................T............. AGGTTTTAGAGAGAGGCGATCGCACTAAGTGGTATT 2728 37 97.3 34 .......................T............. GGATAGCCAACAGCTAGACAGTATAGACACAGAT 2657 37 97.3 34 .......................T............. TTTCCATCTTTTTTTCCTCCTATTTAGGAGGGGA 2586 37 97.3 34 .......................T............. GATGTAATCATTGAGAATTATTTCAAGTCTAGGG 2515 37 97.3 36 .......................T............. ATCGATCCCGCGCCATATAGGAAAAGTCTCACCGGT 2442 37 97.3 35 .......................T............. ACTGCAAAGATGAAGGGGATGAGACAAGCCTATGC 2370 37 97.3 34 .......................T............. AATCGGCGGGATTGGCCCGAAAGCTGCCGACAAA 2299 37 97.3 34 .......................T............. AATCCAGCGCAATTAAGTGAAATGATGAGCGATG 2228 37 97.3 33 .......................T............. ATGGGCAAGGTTAGCTATTCTGATGGACAGTTT 2158 37 97.3 34 .......................T............. AAAGTGGCATTCTGAAAGTCTAGAATTTCTGAAC 2087 37 97.3 34 .......................T............. AGCACCCATAGCTTCCGGCGAACTGCTCTAACCC 2016 37 97.3 42 .......................T............. TTTGCTCTTTCCTTTCTTCTTTTTTGCCAAACGGCCACCACG 1937 37 97.3 35 .......................T............. CGGCGTTCGATGGGGAAGGCCAGGCGATCGGATAC 1865 37 97.3 36 .......................T............. AGAATTTTATCATTTACAGTCTGAAAAGGAATTATC 1792 37 97.3 34 .......................T............. ACCCGTCTAATCATCGATGGTTTACCATGCCCTA 1721 37 97.3 34 .......................T............. GAGCTAAAATGTTGAAAGTAAAGTACGAAGGATT 1650 37 97.3 36 .......................T............. TAATATGGGTGTACCACCGAATTTTTTAGGAGCCAA 1577 37 97.3 35 .......................T............. AGCCTTGGCTTTTTTGCCCCTTAAAATTCTGGCAA 1505 37 97.3 35 .......................T............. TAGATGACAGTTTAGATTATAAACTGCGAATAATA 1433 37 97.3 36 .......................T............. ACTTTATAATCGGATCTATTAACAACTGGCATATTT 1360 37 97.3 34 .......................T............. CCCTCAGTTGCCTCGCTATCCCACTTGTAGAAAT 1289 37 97.3 36 .......................T............. TGTGGAGTACGCGGCTTATGTTCACGAAGGTTATGT 1216 37 97.3 33 .......................T............. CTTTTTCTCCTCTGGATTTTTTGACTTTTTAGC 1146 37 97.3 39 .......................T............. CGCAATCTGAAATTAGGATTATTGCCGTAGATCGCCCGT 1070 37 97.3 40 .......................T............. ACAAGCAGGCTTTTTTGAGGGCTGGTCGCTGGGTTGCCAC 993 37 97.3 37 .......................T............. CAGCATAAGCTCGCCCGCTTTCTGTGATTTTAAAAGT 919 37 97.3 39 .......................T............. ATCAGAAAAAATCAATATAGGGAATTAAAAATGCACACA 843 37 97.3 35 .......................T............. ATCTGCCAAATACTCAAACTAGAAGCAAAAATCAA 771 37 97.3 35 .......................T............. TGATCGCTGATTCTGAGTTGGCAGATTCAGTCAAT 699 37 97.3 35 .......................T............. TTCATTGTTTTTACCTCCTAATTAAAATTCACCTT 627 37 97.3 35 .......................T............. GTGTAAAGGCTTTTTAGCCCTAAATTTATCTCTTT 555 37 97.3 34 .......................T............. AGAATTGGAGCTTATTCAGGCACTTAAGGGGCTT 484 37 97.3 34 .......................T............. TTTCGCCTTGGGCGATCGCTTGCTCTAGTTGGTC 413 37 97.3 34 .......................T............. AGAACGGCAATTCAATCAATCATGACCAACGGGC 342 37 97.3 36 .......................T............. CCGCCATCAGCAAAACCAGGAATCGGCAACTTCAAC 269 37 97.3 36 .......................T............. TTAGTTTAGCGGCAGCGGCTGCCACTAAACCAGAAA 196 37 97.3 0 .......................T............. | ========== ====== ====== ====== ===================================== ============================================ ================== 241 37 98.8 35 GTTCCAATTAATCTTAAACCCTACTAGGGATTGAAAC # Left flank : TTTGTTGTCAGTTACGACATTTCCGATGATAAGCGACGAACCAAAATTCACAATACGTTAAAGTCCTACGGCCAACGGGTGCAGTATAGTGTTTTTGAGTGCGATCTAACCGATACCCAGTACGCCAAGCTGCGCGGGCGCTTGAGTAAGTTGATCAAACCCGATACCGATAGCATCCGCTTTTATTTTCTCTGCGCCTGTTGTCGGGGTAAAGTGGAACGTATCGGTGGTGAGTTACCCCGGGATAATACAATTTTTTTTGTTTAGCTCGGTTGCGCTTCCGGGTAGCTGTAAAAATCCTTAACTATTATCTGGTGGCTGAAAAGCTTATGGAATATAGATTCGAGATGATTTTCCTTTCCAACGCGGGGCGCACCTTATCCCGTAAGGTTTTGCGGGGTCTTGAAGAACTGGGTCACTTGCTGTATGATTGGTTTATTGCGGGTGCGGCGCATACGAACCTTGAAAATCCCATAGCGTATAGCTTTTACCACTGGGCG # Right flank : CAGACACAATAACGACATTTTTAAACGCTATAATTCGCCAATTCAAAAATGAAACGCATCAACCTCAAGAGTTGACAAAGAAAGGCTCATCAGGTACTGTCTGATCATTAACAAAAACAAATCAGACCCAAAATGAGCCACCAACATCTTAACATAGAAC # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATTAATCTTAAACCCTACTAGGGATTGAAAC # Alternate repeat : GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA //