Array 1 5826-6036 **** Predicted by CRISPRDetect 2.4 *** >NZ_ONLN01000031.1 Thermobifida fusca isolate RUG422, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5826 28 100.0 33 ............................ CCCCGCACTACTCCCCGCAAACCAACGGCCTCC 5887 28 100.0 33 ............................ GTGTGCGCCACAGAGTCACCAGCGCGGCTGCTA 5948 28 100.0 33 ............................ CGATGCCGGGTCCATGAGCCTGGTGGACGCTCG 6009 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 4 28 100.0 33 GTGCTCCCCGCGCATGCGGGGATGGTCC # Left flank : GAGAGCGGACGTCAGGCTTAATACCGAGGATGCGATGATCCCCACGTACAAGAGGCGCGTTGTTACGGGGAATTCTCTCCACATCTGGGAGCGGTGGCGACCTGTGTGCTTCACCCGGTCGGCGTAGGCACGAAGCCGCTCGGGGCCTATCGCGTCGAGCACAATGGTGACTCCCGCGAGGAACGTGAGCAGTTTTCCAGCACGGGAGAGCCACAGGATGGAGACGCCGTACAAGGTGTGGTCTGTGAGCTGGTTGCCCGACCACCAAAGGTTCCAAGCTTCGACGATGGTGAGGTCCACGGCAGTACGGTAGCCGCCGTATGGGGTATTGGTGGTGATTTGGTCAACTATGACCATGCTCAAGTAGCTGATAAGGATCTCGTTAGTTCTAGGTTGTCTGTGGCTGTAGAGGAATTTTTTGTGCTTTTGTTCTTTTGTTTGATTTTTGGGAAGTGAATGAAATCAGCATGCCGCGCTGGTAAACTCGCAGGTCATGTAGT # Right flank : TTCAGTGGGGCGTTCCAGAACCCGCCTGGG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCATGCGGGGATGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 20245-20097 **** Predicted by CRISPRDetect 2.4 *** >NZ_ONLN01000323.1 Thermobifida fusca isolate RUG422, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================== ================== 20244 26 100.0 35 .......................... CCATCGCGGACCGCGCCAGAAGAGTTCCGGATCTC 20183 26 100.0 35 .......................... CCGGGGATTTCGCCGGCGCGGCGGCCGCGGTCGAT 20122 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== =================================== ================== 3 26 100.0 36 GTGAGCCCCACGCACGTGGGGATGGA # Left flank : TCCCGGTTCCCGAACACCGGCCAGCGGGC # Right flank : TCGTCAGTGAACTGTGTCATAGAGACGACCGGGCCACTCTCCCCTAGCCGGAACTATTGGCGCTCTGCACTAAGACGACAGTGCATAGCGGAGCACACACGAATCGCCGGCATAGTTCGGGAACGCTGTCCACTCTTCCCGTAGGTAATGCCGTTCCCGGAATCCGCGCTACGAGAAGAGCGGTCTTTGCTTCTTCGCGCCCCAGACCGACTTTGCGAAGTGATTCCTGGTCTTGTCAGCTCACCCCAGTATTCCTGCCTCGATCCTTGAGCTGCGTCACACCCACTTTTCGTGGAGGGCGTAGAGGCGACTACCTCTCAGGCAGCTTTCGGACCTTTCGGCTCCTGCGGTTTCTCCCCCGCTGCCAGGAGCAGACAGGCCTGGACGCGTTCACCCCGTGGCTGCTTGGTCATGGATGGTGACGGTGTTGTGGGCTGCTACTGGTCTGCCGTCGAGCAACGGAGCAAGGAAAGCCATCGAAGCGCGCAGGTCCTCTACCC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCACGCACGTGGGGATGGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-10.60,-10.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [43.3-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 9809-9658 **** Predicted by CRISPRDetect 2.4 *** >NZ_ONLN01000175.1 Thermobifida fusca isolate RUG422, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9808 29 100.0 32 ............................. CCTCAGTCACCCGTGCCACCGGAGCCAGTCAC 9747 29 100.0 32 ............................. GTAGTGCTGGCTAGGGTGGATGGGCTGCCGCG 9686 29 93.1 0 .......................A..T.. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 97.7 32 GTGAGCCCCACGCACGTGGGGATGGACCG # Left flank : TCGGCAGCTCACA # Right flank : GACACAACCACTGATGTCCCTGGCGCCTTCTCGAAAGTTGTGGGAATGCAGCAGTGCCTGGACTGCTCGGGCATTGAGGAGCGCTATCGGTTACTTAGCGCTGCCTCAGGCCAGCACGCGTGGGCCCTTGGGCTGTGCATCGAACGAGAAACTCTGACAGCAACGGCACCGCTGAGTGCCCGCTGCTGTCAGGGCTGCTGGTGCTGCGGGTCACGTGGGCTGCCACGCTTGGCTGGCCTGTTCGATGTCTTCTGCGGCTACTCGGCGCAGCTTGTGGGCGAGATCGGACAGCGCCCGCGCCACGGCTAGTTCCTCCCCAATCTCCGGGATATCGGCGTCGGTGGGATGCTTGCGTGCTTCTCCGTGGCCGCGCAGGTTCCACTTGGTGGACGGCAGTTGCGCTTCGGCGAGGGTGCGCACGGAGCCGTTCTCGTGCACCTCCGACACTGCGACGTCGATCTGTATCCGTTTCAGGGACTGTCCCGGCTGCGGTTGACGGG # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 1 9-159 **** Predicted by CRISPRDetect 2.4 *** >NZ_ONLN01000453.1 Thermobifida fusca isolate RUG422, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9 29 96.6 32 ..........G.................. CAGTGTGGTGGTGTCGCGGCCGGCGACCCATG 70 29 100.0 32 ............................. ACAGCTTCCATTGCGATGCTGGAAAAACGTTC 131 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 98.9 32 GTGAGCCCCACGCACGTGGGGATGGACCG # Left flank : CCAGTGTTG # Right flank : GTGGGTGACCAGTCGCTGGGGCGTCCCTAAGTGCTGGTCTAATTTTGCTGTTGGACGAATTGCAAGAAGGCGAAGGCTGGCATGCAGAAACACGATGAGACATGGATCCGCTATTTCAAGTCCCAAGGCTAACCCAATGCTGTGGGGCTGGCAGTAGGAATGGAGGGCGCCGCCTACGCCCTTAAACGACGGCTTGGTTGCCAAAGTTTGGGAAAAGCGATCGGGTGAAGAGCTGAGGCGGATTCAACTCTTCTATGAGGATCTCTCTGAAGCGCCACTGAGTTTTCATACACCGCGTATCAACGAGGTGTTGTACGTCAACGCTTGGCTCTCTGGTTGGTCGAATGCCTGCGGGAGAGTACAAGGAGGGAGAGGATACGCTGGCTCCTCTCTTTGATGCGAGGAACTCCCAAAGCTCCCAAGTGTCATAGCACCATGTTCAGGCTGGTGTGGACATGGATCCTGCGATGGTCAGGCTTGGGGGGACCACAGAACAAGGA # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [6.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.68 Confidence: LOW] # Array family : NA // Array 1 193-42 **** Predicted by CRISPRDetect 2.4 *** >NZ_ONLN01000241.1 Thermobifida fusca isolate RUG422, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 192 28 100.0 33 ............................ GGCAACGGCCTCGGTTGGGGTCATGCGGTTCCC 131 28 100.0 34 ............................ CGCGCCGAGCCCGACAGCGACGCCGAGCCACGCT 69 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 3 28 100.0 34 GTGAGCCCCACGCACGTGGGGATGGACC # Left flank : GCCGGGTGGTGCCGAGGATGGCGGACGGTCTGCCCGTAAAGAGTGCAACGCCGACTCTTCGGAACCGGTACTATCTCTGTGCGGGACGGGCCTGACAGTGTCGGGCCCATGGTGCGGGCGTGTAGCTCAGTTGGTCAGAGCACCCGCCTTACAAGCGGGCGGTCGGAGGTTCGAGTCCTCTCGCGCCCACGTCGATACGCACTCGGAGACGCCCGGGAGCCGGTACGGCCCCGGGCGTCTTGCTGTATTGAGGCCAGCTACAGCACTTCCCCTGAGCCCCGTGGGCGTGGTGCCATCAACCGTCATCCGTCGCGCAAGAAGAAAGCTCGTCATGGCCACGCAGGGACCGCCAGGCATTCCGCGTATGGCGACGGTGATTAATTGGGTTCTAGTTCTGACTCAGATTTCTGGAAAACGGTCTAGAGTGTCTTGTGCGACGAAGTTGTCCACGCCTTTGGTAACGAGGAGATAACGCCTCGCAAAGTTGCAGGTCAGCTTCT # Right flank : CAGCGGATTTAGCCGCATCTGCGGCCTTTTCCCGCAATTCGG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCACGCACGTGGGGATGGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA //