Array 1 225082-226097 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHOMY010000001.1 Bacteroides fragilis strain MSK.10.5 NODE_1_length_383604_cov_177.155, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ====================================== ================== 225082 35 100.0 34 ................................... GCGCTGATTTGTTCCGCTTCGCCGGAGCTATTTA 225151 35 100.0 38 ................................... CGGCAACCGCGCATGGCTGTTGTTTCATCATATATTTT 225224 35 100.0 33 ................................... ACAAAGGCCCAAGGCGTTCGGAAATTTAATATA 225292 35 100.0 37 ................................... TTCGATAATACTGTCACAGAACGGACCGGATTTAACA 225364 35 100.0 36 ................................... GTATGTCGCTCTGGATGTCGTTGGCCGAAACCTTTC 225435 35 100.0 34 ................................... TTGAAGGTGACTCTCTTGGAATCACTGAAAATGT 225504 35 100.0 34 ................................... GTTTGGCTTTTCCCCTGATTGATGAAGAATGAAT 225573 35 100.0 36 ................................... AACACCAGCCAAACAGGAGATGTATATCCAAGCTTT 225644 35 100.0 36 ................................... GTCTTTAGCAATTTTCTTGTAAACTGTCACGTCATT 225715 35 100.0 35 ................................... ATTCTTTACGATTGCAATAAACGGAACTGCTCGAA 225785 35 100.0 33 ................................... ATTATTCAGAAAAACGCAGCACACCAATAAAAA 225853 35 100.0 37 ................................... TTCAGAGTTTCTCTTTCAAAATCATTCGCTTCCAAAA 225925 35 100.0 35 ................................... TTTGATGAGTGAGATGTTTTTTACCATGTCATCAT 225995 35 97.1 33 ................A.................. TTCGGCGTATTCACCAAAAATTCCAGTACATCG 226063 35 94.3 0 .............................G...G. | ========== ====== ====== ====== =================================== ====================================== ================== 15 35 99.4 35 ATGTAGATCTATTCCAGTATAATAAGGATTAAGAC # Left flank : CTCATAGGCATCTTGAAGATTCCCCGCATTCAGTCGAAATAGTTTTTTTCTAAATTCTTTTGCGAAAAGAAGAAAAAACTTAGTCATCTGATAATATGAAGATTATTCTATATTAAGAAAAAATAAGTGTAAAAAGAGATGCGCAAATAATAGCTTTTACGTATATTAGCAAATCATTTGCGAAAAAAGGATTGATATGTTATGCGCTCTTTGAAATATTGTTCTATATATCAGCAACTTACGCAACATAGTTTTAGGGTTGTTTTCGAAACTCGCCAACCCCTAAATATCCAACGATTATTTGCGAAAAATGAAGTTTACACAGTATTCTAATTATCAATCATTTAGGTAAAAATATCACTATTTACACATTAAAATTACAGAAAAAAAAACCACTTTTGCGAAAAATGCTTAAATTAGCATCTACTATTCTGGTTTACAACCTATTATATTCATAAGCAAATACATTCAAGAATATATAACAGTCTAATAATCAGAGT # Right flank : CAAGTTCTATTCTCGTACCAACTGCCAACATAGTCCACCACAATAACACCTTAAGGGTCATCACACTATGATACAATACATTATTAAGTAATTAAAAGCCATAATTAAATATTTAAAGATCTCTTGGTACAATTTACAATCTGACAAAAAATGCCTCCCCTTGCATACAGATAAAAAAACTCCCGATCGCCTTATGGGCAATCGGGAGTTAACTCTATATAATATTGTTTTATAACCCTATTATTTATTCGACTATAACTTATCTTATTTTTTAGACCATATTAGATCTATGGTAGGAAGCATAATATTTCCAATATCACTTCGCTTGATGCAAGCAAAAGAAACGCTTCATAAATAGAATATAGACCAAACTCAGTGCAATAATGGTACCCGACAAATACCCATATTCATTCCCCGGAAATAGAAAATACCCGGCTATAACTACTGCCTGCACCAACATATACACCAACGAAACCACTACGTGAGGAATTTTCAATTCA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTAGATCTATTCCAGTATAATAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 1 21245-19743 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHOMY010000012.1 Bacteroides fragilis strain MSK.10.5 NODE_12_length_115702_cov_167.912, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 21244 29 100.0 35 ............................. CTCAGTAAGGCGGCTCATGTTTTTGTCAACTTGCG 21180 29 100.0 34 ............................. TCAACTTAGATGTATTCTCAGCGTCTGCGATAAC 21117 29 100.0 34 ............................. CATCTTTACCCGGTTAAGAAAGTCTAAAGCAGGT 21054 29 100.0 34 ............................. CGTTTTAAACTTGCCGTATAACTGTCCTTCTGCG 20991 29 100.0 35 ............................. GTTAGAAAAGATTTTCCTTTCGGGGGCTGACTTTG 20927 29 100.0 37 ............................. TTGGAAGTATCAGTGAGCTGTACTGTCACTTTTCGTC 20861 29 100.0 36 ............................. TGGCTTCATTGTACTCTTTCTCTGTTTTCAGATTTT 20796 29 100.0 35 ............................. GCAGTATGTCCACCCTTTCCAGCCACGGCAGTGGT 20732 29 100.0 34 ............................. CTGCGTGGAGGTGCATTACTGCTTCGAGAAGAAT 20669 29 100.0 36 ............................. CCGAAAACACGAAGAAGATAGAGCTGACGCTCAACG 20604 29 100.0 36 ............................. TTTTGAAATTCTCAGCAACACGCACATAATCATATT 20539 29 100.0 34 ............................. GACGGAAGGCGAGATCTGGTCCGACCTCGAGGAC 20476 29 100.0 36 ............................. ACTATAGACATATATTCATTAACCAATCCGGACACC 20411 29 100.0 34 ............................. ACATAGGGGTTGAATCACAACTAAAGTTACTGAT 20348 29 100.0 34 ............................. TCATTAGATAATAGAGGGAAACAGTCCATCATCG 20285 29 100.0 35 ............................. TATTTAGAGCCGGCGGCCATGACGTTTGCATAGCG 20221 29 100.0 36 ............................. GAATGAATATCATCATACTTTTCGTATTTTGACTTC 20156 29 100.0 37 ............................. TTCTTTTCCGTAATGGTGTACTTGATTGTTACATCGC 20090 29 100.0 36 ............................. GCATTAACCGTAGTGAACTTTTCTCCAAGTTGGGGA 20025 29 100.0 34 ............................. TCCGGATAAATGGTATGTCATTGTTTTCTATAAA 19962 29 100.0 34 ............................. TTTGGCCTGCTTCTGCTGAAGGACTTCTTTCTTT 19899 29 100.0 35 ............................. TCATATAACCCCGCTCCGGTTGCATAGCCTCCTTC 19835 29 100.0 35 ............................. CTGAGAAAAAAGCAAAATAAAGATAAAATGACAGG 19771 29 86.2 0 ..A......................G.CT | ========== ====== ====== ====== ============================= ===================================== ================== 24 29 99.4 35 GTGTTAATTGTACCTTATGGAATTGAAAC # Left flank : CCGTTTAAAATGTATTGGTAAATATGTATGTTATTTTAGTTTATGATTTTGGTGAAAGGAGAGTTTCTAAGATGTTGAGATTATGTCGTCGGTATTTGAATTGGATCCAGAATTCTGTGTTTGAAGGTGAACTCTCGGAAGTACGTTTAAAAGAGCTATTATTATTGGCAAAAGGGTTTATGAATCCCGAAGAAGATTGTATTATCATTTTTAAAGGGGCTACTCAATGCTCTTTGGAGAAGGAAATAGTGGGTAAAGAACTTTCTAACATCGATAATTTTTTGTGAAACGGTTGTCGAAGTGGATCGTTATTGTGAATTATTCAATGATAATGCAACCGAAACGCTCTATGACGTGTTGATACATAGATGTTTAGCGCCTATGTCGCTAACCCATGTTTTTTATATTATTCTTGATCGACGCATTATTTCTAAATAAAAGTATTTTTTCTAAAAAGTATTTGTCTTATTACTAAGTGATTGCGTTGGTTGATGGACAGG # Right flank : AAGGAAGATGTATATTTATAAGATTGGCTTAATAGAACTTAATAGAATGAATTTTTTTTTCTTGCTAGCATATTCTCTCATTATCTTTTGGGAAATGTTTTTATTAATCCTATTTCCTTTTTATTAGAAAACAATCCTTATATTTGTCCCTTGTATTATTAATTTAATGACAAATGACACTTATGAAGACATTGAATTTTATGAAGACGCTGCTTTTATTGGTAGCTATAGTAGGCTTGAGCTCTTGTGGCGACAAGTATTATTCAGATGATTATTTGCGAAACAGTAATGCAAAGTTATGCGGAAAGACTTGGGTGAATGATTCTGATAAAAATGATGCGGATGAATGGGTGCGCCATACATTGAAGTTTGATGATAGCGGACGGCTGGCAGAAACTTATGCTTATTATCATTTGAATGAAAACCAACCTTACCGGACAGAAACAAATAATCTGACTTGGTCCTGGATAGACGATTCGATGGAAGGAATTGTTTTTGAC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTAATTGTACCTTATGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 1 38379-37992 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHOMY010000025.1 Bacteroides fragilis strain MSK.10.5 NODE_25_length_69235_cov_156.714, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 38378 36 100.0 35 .................................... CGGAATTTGCAGCTGGGTTTGGTTAATTTTGAAAA 38307 36 100.0 34 .................................... TGCTGCTGAAGCTGACACCTTGATAGACATGTTT 38237 36 97.2 33 C................................... CGTATAACTGGGATACAACTTTTGTAGACCAAG 38168 36 100.0 34 .................................... CAAAGAAAAGCATTTATTATGCATCCAATGGCAT 38098 36 97.2 35 C................................... TCTTTTATTTTCTGCAATTTATGGCTGATTGTTTT 38027 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =================================== ================== 6 36 99.1 34 TGTCTTAATCCTTATTATACTGGAATACATCTACAT # Left flank : AGGGATACAGATAATAGCGCATGGAGTCATTTAAATTGAACATGGCATCAATGGATTAGTTGGAGTAAGACTTTAAGCTGCTCGGCACTCACCGTACCTTTGACACGCAAGATAGCTCCGCAAGGATATAAGATCTCATATTCCGGGGGAAGCATCATGGAGGCTGGAGTGTCAGTATGGGTTAGACGAGACAGGCCGGACTCAACTGAGTTGGAATCCAGCACAATAGGAACAAAACTTTTAGTCGGCAGCTTTGACTGGCGTAACTTCTTCTGCCAATAATAGAACTTGGCCTCGTTAATCGCTTCATTGGCGCAAAAATCACGAACTTTCAAACCGCTACGCTCGTAACGGGAATAGATAACTTCAAACGATTTGAGATTCCACATAACTTTTTTAGGGCAAAGGTAATGCGGAAGAAAGAAGAGAAAAAGACGGAGGTCACCGAATGCTTACCATCTACATATCAAGGAAGGGAAATATTTCACCAAATGGGTGAA # Right flank : ATATTGATAATCAAATTATTAAATAATGTGTGTTCTATAGGGGTAAATATATAATAACCTGTTATTCAGATATATAGATTCATATTGAACTGAATTTTCGCAAATATACTCCTTTTTTCTATAATTTAAATAAATAATTTGTAGAATATAGAGATATTTAATTGATTATCACTTTGATATGATCGATTCATTATTCGCAAATGCCTGCTTTATTTGTTATATTATAGCCTATTTCGAAAATAAGATTAATCTTATATTTATAATTATCAGATAATAAGTGCATTATGTCAAAGAACGAATTACTTATTTGTTTTTTTCGCAAATGATTTACTAATATACAAAAAAGCTAGTTTTTTCGTAGCTTTTATACATTATATATTATTTCTCATTTAAAATAATAAGCAGAAAATCAATGAATTAAACAAATTCTCATTTTCGCAAGAGGTTTAGACTATTTCGACGGTTTTAATTATCTTTTTTCGTATAGGTTGATATATAAT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTCTTAATCCTTATTATACTGGAATACATCTACAT # Alternate repeat : CGTCTTAATCCTTATTATACTGGAATACATCTACAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA //