Array 1 1676-22 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBQU010000045.1 Ruminococcus callidus strain MSK.21.68 NNDECEFG_45, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 1675 33 100.0 35 ................................. CCTGAAATACCATGTCATAGTTCTTGTCCATCCAT 1607 33 100.0 35 ................................. CTTGCCGAAGATCATCAGCAATCCAGCACCGATAC 1539 33 100.0 35 ................................. ATTGCTACAAACTATCAAGGTGTGGGTGTGGGAAT 1471 33 100.0 35 ................................. ATCCTGTGCAAGCGCGGCGTCGATGGCGTCAAAAA 1403 33 100.0 34 ................................. GGCATCGTTATAACTGGGGGGTCGTGCCGTGGGG 1336 33 100.0 35 ................................. TTCCGGCGTAACTGCGTAAGAATACCAGTACGCTC 1268 33 100.0 35 ................................. CGCAATCCAAATTGGAGGATTCCGACGACTGGAAC 1200 33 100.0 35 ................................. TTTTTCCTCCTGTTCTAAGTCGAGTTGCTCCGGAT 1132 33 100.0 35 ................................. TTTTTGCTCCGGAAGCCAAAGTTGTGAAAGGAACG 1064 33 100.0 34 ................................. ACTTTTTTTTAGCTCAATAAAAAAGAATATATAT 997 33 100.0 33 ................................. AGCATCCACAAGGCATAGTAGCACGCCAACGCG 931 33 100.0 36 ................................. ACAATTGTTTTGGTGTCTGATAATGTAGATGACATG 862 33 100.0 35 ................................. CTAAGCTGTATAAGAATAAGAAAATTGCTGAACGT 794 33 100.0 35 ................................. AAGCGTCAATTTAACTCGATCTGCAATTTCCGACA 726 33 100.0 35 ................................. TCTATGTTTTCATCATGTCCCTGACGAACTTCCAG 658 33 100.0 33 ................................. GGATTTGTTGCTGAACTCGTAATAATGGACGTT 592 33 100.0 35 ................................. TCAACGTGTACTAAAAATTGCAACAGGACAACAGC 524 33 100.0 35 ................................. CGAGCAAAAATTCCACATTGCAGAGCCGCAGCATG 456 33 100.0 34 ................................. CAAAGACTGCGGGTCAATGTAGTGAATGGTATTG 389 33 100.0 33 ................................. CTCGATTCATCGCCAATGTTGCCGCGGTACGTC 323 33 100.0 34 ................................. CTTTTCCGTGTAGGATTCTGTGCCAGTGTCCTCT 256 33 100.0 36 ................................. CTAAAATGGACGGCTCCGGCGTTTATCAACGCCTCG 187 33 100.0 33 ................................. ATTTTGTGCAAATAGACGAAACGACCGACACAA 121 33 100.0 34 ................................. ACCGCATCCAACAAATCGGATACTATTACATTTG 54 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 25 33 100.0 35 GTCTCCCTCCACACGGAGGGAGTGGATTGAAAT # Left flank : ATCCGCCGTTTTTATGGAAGTGATTGCATGCTGGTGGTTGTGACCTATGATGTCAATACGACGAGTAAAGAGGGGCAGAAACGATTGCGCCGAGTGGCAAAGATTTGTGTGAATGTCGGGACAAGAGTGCAGAATTCTGTGTTTGAGTGCCACGTGAATGCAGCGGAATGCCGTCTGCTCAAACAGCGGCTGACGGATGCCATCGATACCGAGAAGGATAGCCTCCGGTTCTACTATCTGGGGAATCAGTATCAGACAAAAGTGGAACATATCGGCGCAAAGGAAACCATCGATGTGGAGGAACCGCTTTTGTTCTAAGAAAACGCTCCGGTGCGAACCCTAAGCGCACAAAAAAAGCAGGAGGGATTCGCACCCGCTTTTTCGTAAAAAAATCAGAAAAAAAGTATTTTTTCTGACATGGAGAAGTGTATCTGTGTTCTTTTTTGTCAAAATTGCATTTGCTCTGCTGAGTTTTAAGCGGAAAGCTGTGTAATTTTGCT # Right flank : TCTGCGATATAAGCGGCTCGTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCCTCCACACGGAGGGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCCCTCCACACGGAGGGCGTGGATAGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [15.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.01 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 16340-11470 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBQU010000009.1 Ruminococcus callidus strain MSK.21.68 NNDECEFG_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 16339 32 100.0 34 ................................ GCTTGCCTCGTCCAGCTGAGTCTGTACAGCTGCG 16273 32 100.0 33 ................................ TCGTCTCGCATTTTGATACACGTTTATTTTGTC 16208 32 100.0 34 ................................ AAAATATATCACGCCGGAGATGTGCGACGAGATC 16142 32 100.0 33 ................................ AGCGAGATCAGGAGCCATGTCATTGAGTCATAT 16077 32 100.0 34 ................................ CTATATCTGCCGCCATGTTGTCCAGTCATTGCCA 16011 32 100.0 34 ................................ CTCTCCCGGTAGACGTTAAAATAGATAAGCAGCG 15945 32 100.0 34 ................................ AGTGAGTTTGCAGACGCTGTCTCAATCCCTGCCC 15879 32 100.0 34 ................................ GTCGTACCGTACGCCATACCACACAGAGAGATCA 15813 32 100.0 35 ................................ TAACGGTTACGCCCCCAAGAGTGGAGGTTTTGTCG 15746 32 100.0 34 ................................ CGACGGCTTTGAACAAATCACCGTGCGCCGAGGT 15680 32 100.0 34 ................................ GTGGTGCTGGTACAGTCGTTGTCACCGCACAGGC 15614 32 100.0 33 ................................ TGATCTGTATCGACTCTTGCAGCGTCACTGTGT 15549 32 100.0 34 ................................ CAGCAGATAATCGATCAGGGAGTCAATGATTTGC 15483 32 100.0 33 ................................ GTTGACCATAAAAGCGATGCACACAGCGTCGCG 15418 32 100.0 34 ................................ ATGCTAAGGGCGTACTTGACACTACCCAAAAAAA 15352 32 100.0 34 ................................ TCATATGATTATCCTCCTATATCTGCCGCCATGT 15286 32 100.0 35 ................................ TTGCGTTTGCAGCGAGTTGATCTGCGTCTTTTGCA 15219 32 100.0 34 ................................ GAATACTATTATAGGAGAGCAAAACAAAAACATG 15153 32 100.0 33 ................................ TTGCTGTACCTGTGCTCTCAAAACGCGGAGATC 15088 32 100.0 35 ................................ TTGCTTTTTCCTGTATCAGCGGCATGTTGTTTTGG 15021 32 100.0 34 ................................ GATAAGCCAAATGAGATCATGTCGACCTCTGACT 14955 32 100.0 35 ................................ ATTGCAAGAGGAGTTGCCGATTTATGGAACAACTC 14888 32 100.0 33 ................................ AGAAATGCGCCCGCCGTGACCGCCAGAAGCGTC 14823 32 100.0 34 ................................ ACGGGCAGAGTACAGCACATGATTTACGTCCGGA 14757 32 100.0 35 ................................ TGGAACGGTATTAACGACATGGTCGGATGGATTGG 14690 32 100.0 33 ................................ GTAATCGCCTGAAACGGCGCTGTGCTGCCGTCT 14625 32 100.0 33 ................................ TTTAATTTTAGTTAGTAAATAACCCTAAAAAAA 14560 32 100.0 34 ................................ ATTCAACAAGTAGACGTTTCCAAATTGAACGAGG 14494 32 100.0 34 ................................ GTGATTGCAAAAACTCTCGGATACGTTGACGGAG 14428 32 100.0 34 ................................ ATGTGAAGTACCACTACGACGACAACGACGGTTT 14362 32 100.0 35 ................................ CAATGGGAGTTAAGGTTAATATATCAAATGATACT 14295 32 100.0 33 ................................ GGTGTCATCAAGAAATGGGATTATCTACAGGAG 14230 32 100.0 35 ................................ GGTGATGGAAAAGCAAGTCGGTAAATTTTTACCGA 14163 32 100.0 36 ................................ ACCGAGGATAGCGGAAACTACAATATCAGCTTTGCG 14095 32 100.0 36 ................................ CTAATCACCTCGTACAATGCATTTCCGTTCTTGTTT 14027 32 100.0 35 ................................ CAAGCAGATCGCAATCCAATATGCCCAGGATGTCG 13960 32 100.0 35 ................................ AATCAGCTATCAATTCACGGATGCGGATGGAAAAC 13893 32 100.0 35 ................................ TGTAGACATGTGCTTTTTGTTTTCGGCGGATTGGG 13826 32 100.0 35 ................................ TGCCGGAATGCTGTGATAGGGGCGAATCTGGATGT 13759 32 100.0 34 ................................ TGATACAGCAGAGCGTATTCCTCCATCGTCAATT 13693 32 100.0 36 ................................ AAGCCCAACAACTTTGAACTGGGCGAGATCTTCGGC 13625 32 100.0 35 ................................ TTGCATCCCCTCCTATTCAGTTTTTGGAGCCCCCC 13558 32 100.0 34 ................................ TAACAACTCAACATTTTCAGGGTCAAGCTTCAGC 13492 32 100.0 34 ................................ AAACAGGCGGCGGCAACTGAAAAGGCGTTTTTGA 13426 32 100.0 34 ................................ AAGTCTCTGGCGGTTATGTTTGGCGGCTCTGCCA 13360 32 100.0 35 ................................ CGTTGTACCATTGCTTTGCAGCATATGGCGTTTTC 13293 32 100.0 34 ................................ CCCAAAGTTGTCAGCATAGACGCCCTTGACCGCC 13227 32 100.0 35 ................................ ATGTGCCATATTGTATACCTCCTTGGTCTTTTCAC 13160 32 100.0 34 ................................ TGCCAAGCGTTGCAATCGCCTGAGCAGGCGCTCC 13094 32 100.0 37 ................................ GATCATATCAAAGAATTGCCCAGCAAGATGTTTAGCG 13025 32 100.0 36 ................................ TGAAAAGCTGGGCGTATCCATGCAGGACATGGACAG 12957 32 100.0 33 ................................ TTTTGATTGCCTGGTACAGCGTCGGCGCTGTCC 12892 32 100.0 34 ................................ GCCGCTTACCGCCGCGTTTTTGCACGTGTTATTT 12826 32 100.0 34 ................................ CATTGTGTACGCCGGCAAAAAATACACAGAGTAC 12760 32 100.0 34 ................................ ATCGCAGACTCCGGCATAGTCGCCAGCAGATAGT 12694 32 100.0 35 ................................ AATATGCTCCAGCCCGTCAATGGTCACGCCTGTCT 12627 32 100.0 34 ................................ CGGAGAGGGCTGGATTATGGACTGGCAACCGGCG 12561 32 100.0 33 ................................ ACGCTCTCCGGCGCGCTGCATTTGGCTAACCTC 12496 32 100.0 37 ................................ CGCTGGTACAGGTAGCAATACCCGCCGCCCTTTGCCC 12427 32 100.0 33 ................................ TGTGTGGGGATGATTAGGGCACAGCGTGCCAAT 12362 32 100.0 35 ................................ ACGCTTGCCGCAAAAGTTGACGCTGTCCACAGCGC 12295 32 100.0 34 ................................ TTCTGGAGACGCTCCCAGCGCCACTACATAAGAG 12229 32 100.0 33 ................................ TGTGTCCAAATCAGCTTTTTGGCGAGATACATG 12164 32 100.0 34 ................................ CGGCGTGATATATTTTGAGATCGCGTCAAAGACG 12098 32 100.0 33 ................................ ATTTAGCGGCGGCTTGACATGATGCGGGACTAT 12033 32 100.0 35 ................................ TTCGCCGTCCGCCAAAGTGGAGAAGACCGGCAGTG 11966 32 100.0 36 ................................ TGCGCTGCTGGCAGGCGTGTTGTCCGTGCTGACAAG 11898 32 100.0 35 ................................ TGTGACGGTGGACAAAAAAGTCTACCGTGCAGACG 11831 32 100.0 33 ................................ CCATGGAGGCATGCGCAGACGGCACCGCACAAA 11766 32 100.0 33 ................................ TTGATGTGTATTTCCGGAAGCCAAGCCAGCGAA 11701 32 100.0 34 ................................ GATTAGAAGTTGTTAGGGTAGATACAAGTTTTTT 11635 32 96.9 35 ..............A................. TCCAAAGCGAACTGAAGGTAAACACGAAGCTGAAA 11568 32 100.0 35 ................................ CGTGTTTTATTTATTCGGCTTGTGCCGGACGGGGG 11501 32 93.8 0 .................T....A......... | ========== ====== ====== ====== ================================ ===================================== ================== 74 32 99.9 34 GTCACGCCCCACGCGGGCGTGTGAGTTGAAAT # Left flank : GAAGAGTATCCTTGTTTTCTGATGAAGTAGGTGATGTTGGTTGATGGTGCTTGTAAGCTATGATGTGTCTACAACAGATGCCAAGGGAAGAACGCGGCTCCGAAAGGTGGCAAAAACTTGTCAGAATTATGGACAGCGCGTACAGAATTCGGTTTTTGAGATAGATGCAGATTATGGTACATTTTTAAGAGTCAAGGATCAGCTTTTGAAGCTGATCGATGAAGAAAAGGACAGTCTGCGGTTTTATTATCTGGGGAATCATTGGGCAAGGCGCGTGGAGCACTTCGGCGCGAAAGAAACCTATGACCCGGAAGGCGTACTGATTATCTGAGTGTTTGGCTGAAACTTATTCTGGCTGCGAACCGCAAATAATCTGAAATTCCGGAGCACTTCGCAAAGGAAAAGAGTAAAATAAAAATATTTTATGCGAAATTGTATGATTTTGCATAGGATAATCCGCTCGCGTGATAATTTTGTGCCTCTTTGACACAACATCTAGG # Right flank : TGTATTTACAGAGATCGAGACCTGCAAATAAAAGTCAAGCCACAATACAGTGAATTTACAAACAATTCACAAGACAAAAAATGGCATGACAGAAAGGCCGCTTCCAACTTAAAAAAGAAGCAGCCTGATGAAAAGATGCGTAGAAATATTACATCGCATTCAAAACCTGATTCACTTTGGCATAGTATATTCGCAGGAATTTGTTTGCAGCAGCAATTCTGTAGGCTTTCCTTCAGAGCGTTTCTTGATGATGAACTGATACACCGGTTCATTTTCCGGTTTACTTAGGATAAATATTTCGGTTATTTGAAAGAGAACTTTTCTGAGAGTTACAGAACCACGTTTGGAAATATGCCTGGAGGATACATCAAGCTGTCCCGGCTGGTACGGCGGAGCATCAAGGAGGCGTTGTCATGACTTATGAACAGATCAATGAGATGATGCAGGAGATGGAGCTTCCCTTTGCCTATCATCATTATGCGGAAGGCGAATCGCCTGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACGCCCCACGCGGGCGTGTGAGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 18179-17675 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBQU010000041.1 Ruminococcus callidus strain MSK.21.68 NNDECEFG_41, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 18178 33 100.0 33 ................................. CTGCGATATAAGCGGCTCGTGCAGCCCTCTTAC 18112 33 100.0 34 ................................. TTCGTGCAAGCCCTCTGCAACCCTGCGAAAGAAG 18045 33 100.0 36 ................................. GCGCTTGATTAGATACCCGTGATCCCGCAGCCATGC 17976 33 100.0 36 ................................. CGCGATACCATCGAGCCGGCCTTGCCGCATTGCAAG 17907 33 100.0 33 ................................. CTGCGATATAAGCGGCTCGTGCAGCCCTCTTAC 17841 33 100.0 35 ................................. CCGTTGCTGATCTGCGCCACAAATCCGCCGCAGCG 17773 33 100.0 33 ................................. AGGATGCGTTGCCTGCCATCATTCCGGCGGGCA 17707 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 8 33 100.0 34 GTCTCCCTCCACACGGAGGGAGTGGATTGAAAT # Left flank : | # Right flank : TGCCTTCTGGCGTGGGGTGTCGCCCTCTGGGGTTTCGTCATTCCTCAAACAGCTCCTCTTTGCCACCGCTTTTCACGCAAGAAAGCGGTGGCAAAACCATATCCCGTCCATTTCATCCGCCACACTTCAAACCACCTTTCCCTACATCCCCAGCATCTGCAACCGCCGGATCAGCAGTGCAGCATCCAGCACATCGTACACATATTCATTCGGAACGCCCGTCTCTGCTGTTTCCAGCACAAGAGACGGGTATTTTTTATGGTAGACATCATACAGGAATTTCCCCACGGCTTTGGAACGTGACTGTCCGGCATAGCAGTGTACCAGCAAGGTATCAACCTCCTGATTCGCATCGGCGAAGTCGAGAATGCGGTCTGCCATCGCGTCCTGAAACAGCACGGTGCCCTCTACCTCTGTCACAATATCATCGAAAAGCAGCGTCAGCACGTCTTTGCAAAAGACGTTTTTCTGGAACTGCACGCCGAACCCTTTGGTGTGGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCCTCCACACGGAGGGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCCCTCCACACGGAGGGCGTGGATAGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [41.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //