Array 1 23560-24686 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWZN01000039.1 Escherichia coli strain CVM N33653PS N33653PS_contig_39, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 23560 29 100.0 32 ............................. CTGCCGACAAATCCCTGCTCGTTGGCTACTCG 23621 29 100.0 32 ............................. AATAGTGCCTAGGTTGTACCATTTTTGATGTT 23682 29 100.0 32 ............................. ATTCAGAAAATTTAAAAATGTGGGCGCGTGGC 23743 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 23804 29 100.0 32 ............................. GTGTATGCGGGTGTGTGTGGCTGCCAGTGCCG 23865 29 100.0 32 ............................. GCTCATTTTCCGGTGAAGTGAAAGCGTCTACC 23926 29 100.0 32 ............................. GGGGCGAGGTGATCTTTCAATAACAATACAGC 23987 29 100.0 32 ............................. AGGTTCAGGAGAGTGCAATGCGTATCACAACT 24048 29 100.0 32 ............................. CCGATTCCGCTGGTCTTGCGAACTCCCCTGAA 24109 29 100.0 32 ............................. AAATCATGGATTGATGAAGATGGTTATGAAAT 24170 29 100.0 32 ............................. GCGTCATTTTTATATTCGTTATCTCCGGAGCA 24231 29 100.0 32 ............................. TGAGCAGATGCATATAGCGCCCGGGGTGTATG 24292 29 100.0 32 ............................. CTTTCGCGCATATGCTCGATCACATAACCGAA 24353 29 100.0 32 ............................. TGAGAAAGAATTATTCTCTGACATGGGGCCGC 24414 29 100.0 32 ............................. GCCAATGATCCCTACTCGTACCCCCAAACGGG 24475 29 100.0 32 ............................. GAGACGGAAATCGCGGTTGATAACGCTGATAT 24536 29 96.6 32 ............................T GGATCTGTGGGATTATCAACGAGGTCAAATAA 24597 29 100.0 32 ............................. GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 24658 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGAATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 29830-28824 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWZN01000168.1 Escherichia coli strain CVM N33653PS N33653PS_contig_168, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 29829 29 100.0 32 ............................. ATTAACGCGGCCCGCCTCTGCGTTGGCGTGAA 29768 29 100.0 32 ............................. CGCGTTTCTGGAACCGTAATTTGCTGCGGTAT 29707 29 100.0 32 ............................. CTATTGGCCTCACTGCCACCGCAGTTAATACT 29646 29 100.0 32 ............................. GTGGTTACCTAGTTGCTATGTGTTCGTGACAA 29585 29 100.0 32 ............................. CGCCGAGCGTGGCGCGGATATAAAAAAGCCCC 29524 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 29463 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 29402 29 100.0 32 ............................. CTCCGCTCTGTGTTCGATAAACTCATCCAGCA 29341 29 100.0 32 ............................. TATGCCTCTTTTAAACGCGCCGCCTTTTTGCC 29280 29 100.0 32 ............................. ACGAAAATCGCCGCCGGTGTCCTCGCTGATCA 29219 29 100.0 32 ............................. GACTCAACCGCGCTTCCCGGCCTCACCACTGC 29158 29 100.0 32 ............................. GCGAAAAAATACGGCTGGATGCGACAAAAAAA 29097 29 100.0 33 ............................. GAGAAGAAGCTCCTGAGCTAACCGTTGAAGAGC 29035 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 28974 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 28913 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 28852 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 17 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGACTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //