Array 1 1228528-1226252 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134282.1 Streptococcus equinus strain NCTC8140 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1228527 36 100.0 30 .................................... CAGTTGCTAAACATGTGTTGTTTAGACACA 1228461 36 100.0 31 .................................... CTAATAAACAAAACGGACTTTTAAAAACATA 1228394 36 100.0 30 .................................... CTTGTTCTTTATCCATATTAATTCCTTTCT 1228328 36 100.0 30 .................................... ACTTGTCATGCTCAAATTTGGCTTTTTCTT 1228262 36 100.0 30 .................................... GCTACCTGAGATAATTTGAAGAAGCCATTT 1228196 36 100.0 30 .................................... TGCACCTTCAACAGTGGCTGCTTCGAGACC 1228130 36 100.0 30 .................................... TTTTGTGTCAAAACGAAAAATTCACTTCGA 1228064 36 100.0 30 .................................... CATGTTTTCGATTTCCGCGCGTTGTTCTAG 1227998 36 100.0 30 .................................... AAGACGCTATTAATAGTATTTTAAAAGACA 1227932 36 100.0 30 .................................... TTCATCGACTCGTTTTCGCACTTCTTCAAT 1227866 36 100.0 30 .................................... TGAAGCTAGCGAAAAGGTTAGCGAAATAGG 1227800 36 100.0 30 .................................... ATGTCAGGCACGTCGGCACTATTCGTTAAC 1227734 36 100.0 29 .................................... GAAGCTGAATATACGTTCAAAACGTTAGA 1227669 36 100.0 30 .................................... TTGGATAAAAACAATTTAAAGGCGGTATTG 1227603 36 100.0 30 .................................... TTGCTGAAATGCTGCATGTTGAGCCAAACG 1227537 36 100.0 30 .................................... ATTTTTCCATTCGGGTGTTTTATCCTGATA 1227471 36 100.0 30 .................................... TAAAGTCAGTGTTATATTTGGGAGCGTAGG 1227405 36 100.0 30 .................................... ACAGTTTTTCCAAAAGTGGGATATAGTTTG 1227339 36 100.0 30 .................................... TCAACATTATCACCTTCGTAGATGACTTCG 1227273 36 100.0 29 .................................... TGCCCACAAACTTTCATCGCTTAAAAGTC 1227208 36 100.0 30 .................................... TGTTTTAGCGGCATTAGGATTCTCACCTAC 1227142 36 100.0 30 .................................... CTGACTTTCTTGCCACTATCTCGAAGCATT 1227076 36 100.0 30 .................................... CAAACTCAGCTAATTCTTCAATCCACCCAA 1227010 36 100.0 30 .................................... AATCGCCTAATTCCCACTCCATGTTCTCTT 1226944 36 100.0 30 .................................... AATTTTTCTATCAGCACAAAATCTATATCT 1226878 36 100.0 30 .................................... GCCAAGAAACGCTGTAAGTTAGCGCTTTGG 1226812 36 100.0 30 .................................... TGTTATCTAGTCCTAAATGGTCTACTGACA 1226746 36 100.0 30 .................................... TGCCCATAGTTTAATCAGCAAAGTCGCTCT 1226680 36 100.0 30 .................................... GGCATTCATCCAAGTTTCATTTGACATAAG 1226614 36 100.0 30 .................................... AACTAAAACCAGTTTTACCGTCTGCCGAAC 1226548 36 100.0 29 .................................... AACCCGTCAATGGGATTCCATTTGAATGA 1226483 36 100.0 30 .................................... ATATCAACCTCACAAACAAAGAATGCCAAA 1226417 36 100.0 30 .................................... TTTGCTGTCAATGTCTGATTGGACGTCTTC 1226351 36 100.0 30 .................................... CTGTTGGTGCATCTGATGGCTGTTGGGATG 1226285 34 80.6 0 ....C.................CAAC...--..... | ========== ====== ====== ====== ==================================== =============================== ================== 35 36 99.4 30 GTTTTTGTACTCTCAAGATTTAAGTAACCGTAAAAC # Left flank : ATGGATGACTATCTTGATTATTCTTCATTTATAAGAATTTGTGAATCTATTACTCAGATAACAAGTGAGTTTCCAAATTTTTACTGTACCATTTTTCCTTCGAATGAAAGTTATTTGTATGTTACAAAAGAAACAATAGAGTCTGTTACAATTGTTTCGGAGTATATTGAATCCTTATATGATCTTGATTTTATGTATGAAAGATTTGTTGGAAGATATCCATCAAATAATATACCAACGAAAAAAGAATTTTTAATTCTGCTACAAAAAAATGCAAGTTATCTATTTAGCAATCAAATCACGTATGTGAGTTTAGGAATTTCAGATATGGTTGCTATTAAAATACTTAATAGCTTATATCAGTATGATAAGAAGTTGAGTTATCCCATTCCTTTGGTCGACCCGCTTGAAATCAGCTTTTTAAAGGACAAAGATTGACTTTTTTGTTTAATCAAATTATAATTCTTGTAGGGTACAAGAGCTAAAAATGACGATTTGAG # Right flank : CCCACCTAGTTCGTCACTGGGTGGGGTTAATCTATGTGGGTCATAGGTTTGCGATGAGTTGAGTTTTTATTATCTTTGCTTAAATAATAGCGCTTTCTGCAAAAATTGTAAAATGATTTGCGGTAGCTGATTTTAGTGATATTTATCGCGCTTAGAAAACTTTTTATAGCACCAGTGGTGTTTATTTGTTATAATAGAAATAATGAATAATTGTATAGGATTATAGATAGATGGATATTCAAGAATTAAAAAAACGACAAGAAAAGATTCGCAATTTCTCAATTATTGCGCATATTGACCACGGGAAGTCAACTTTGGCTGACCGTATTTTGGAAAAAACTGAAACTGTCTCTAGTCGTGAAATGCAAGCTCAACTCTTGGATAGCATGGATTTGGAACGTGAACGTGGTATCACAATCAAATTGAATGCGATTGAGTTGAACTACACAGCTAAAGATGGTGAAACTTACATCTTCCACTTGATTGACACACCAGGGCAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACCGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACCGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //