Array 1 1377673-1378641 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWJJ01000002.1 Paenibacillus polymyxa A18 scaffold00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 1377673 32 100.0 37 ................................ ATGCAGCTCCGCGATATACCCATCCCAAGGAACCCGA 1377742 32 100.0 34 ................................ ACCTGCATTCGTGTAGGTGCGTATAAGGTATTCA 1377808 32 100.0 34 ................................ GACTGCTTCGGCCGGTGTTTCCTCTGCGGCTTTC 1377874 32 100.0 36 ................................ CTTCAGATCAGCTTCGTAAATGGTCACCATAACCGT 1377942 32 100.0 36 ................................ CTATACGCAGGAACTCGTCATAATCCTTATCTATGA 1378010 32 100.0 35 ................................ CAACTCACAGGGCGGCATTCTCTATTTGGAGGCAA 1378077 32 100.0 35 ................................ TTGTTCATGTATCAGCCTCTCCCCCACTGTTTCGC 1378144 32 100.0 37 ................................ TGCTGTACTTGTAGCAACTTGAGATTGTCTAATAATC 1378213 32 100.0 34 ................................ CCGAAACAAAGGAAAAATACTCAAAATTCATTGA 1378279 32 100.0 34 ................................ TTCCTGGATGTGAATGTACATTTGATGCGTCCAA 1378345 32 100.0 36 ................................ TCTCTTGTTGTTTGGTTTATTGCCAGGTGTACCAGG 1378413 32 96.9 34 ....................A........... AACTAAATAAACAACAAAGGACTCCATACTGGTT 1378479 32 100.0 34 ................................ TAAAATTTTTGGAAAAGGGTAGGGGGCTCAAATT 1378545 32 100.0 33 ................................ CCCTAGTTCCACCTGAAGAGCTAGAATTTTTTC 1378610 32 93.8 0 .......................A...A.... | ========== ====== ====== ====== ================================ ===================================== ================== 15 32 99.4 35 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : CCAAGTTCCGTATTCGTGTCAATGTCATTTATCCAGGGGCCATTTCGACGAATATTGATGAAACCACGGAGAAATCGGAAGGGTTGAAGCAGATTACCATCCCTGTGCAATTTCCCGAGGGAGATCAGCCGTTGGCAGATGGACCGGGACAGCCCGAACAGGTTGCTGATTTGGTAACATTCTTGGCCTCTGATCATTCGCGTCACATCACTGGCGCACAAATTGTGATTGATGGGGCAGAGTCGTTATTGTTTTAGAAAATGGAGTATTCTCTGGGACAGAGAAATGTTTTGTGGTATCTTAAGTGTATTCTTACTTACGGTGCGAATGTGAAGCTCACATAAAAACCCCAGATCCTTCGCACCTCGAAATTTGTCGAGATGGATTTATATTCATTTTATCGTTAGAAGTCAATAGTCGATTCAAGCTTTTTAAGCATCGTTATTTTCGAAATTATAAGGAATTAATACCGTTAGAGTATTAATTCCTGCATTTTCGCT # Right flank : TTATCTATAGTACCTAACTTGCATAAGAACTCCCAGCAGATTCTTCATGATTGTAGCCAAGACATAATTGATATTAAACTTTAGGAATATCGGTTTAGTTATCTTAAAAATATTATTTCCACATGACTATAAAAATATTTGTTTACATAACGAGAATAAATCTAATATGATTAAGAAGTCGTTGAGAATCTAGTGTTTTTAGGCGAAATACAAACCTCTTCACATTAAACAACCATAAGTTCGTAAAATGAAACCTGAGATAGGATACGGAAACCAAAGGCTTTAAATTAAGTAGATAAAAGAGGAGTATGTAGCATATAACGCTACGACAATATATAAAGAATTGTCGATGAATTCACTTAACAACGCAAGTGTTTAAGTGGTTATTCTGGGCTTTGTCGATATTATCTTATGCATGGTCACACATTTAAATATTTGTTCAATGGAGGTAAATAGATGAATTTATTAGCTATTCCTGGTCTGTATTTTTATATCTATCT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1387752-1388401 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWJJ01000002.1 Paenibacillus polymyxa A18 scaffold00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 1387752 33 100.0 37 ................................. ACCAGCTGCAGCCGGAGCTACAAACTGGTTAAGGTAA 1387822 33 100.0 35 ................................. TACCATGGAAGGGAGGTGAGCAACAATGAAAAAGA 1387890 33 100.0 37 ................................. AATCGCGACGTTGACCTCGGACAGATATTGTGTGATT 1387960 33 100.0 37 ................................. ATCTAAGGCGTATATCTTCCGCCGTGTTTTATCATAA 1388030 33 100.0 33 ................................. ATCTATAATTGCTTCATGTGTTCCTTGAACTAG 1388096 33 100.0 35 ................................. AACATCGTGCGGTACATCCAGAATCACAAGGTTTC 1388164 33 100.0 36 ................................. AATAAAGATCCAGACTTAAATAAAAAAACAGGTGTA 1388233 33 100.0 37 ................................. TCGAAGGCGATACCGCCGAGCAACTACAGTTATACGG 1388303 33 100.0 34 ................................. CGCTAGATGGTAAGAAAACTGCTTATGAATTTAC 1388370 32 87.9 0 ..........A...-.........A...A.... | ========== ====== ====== ====== ================================= ===================================== ================== 10 33 98.8 36 GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT # Left flank : CCATTTTTGTGGAAGTAGGTGTGAACACTTGCTCATTTTGATTACGTATGATGTAAGCACGGTAGATAGAGAAGGCAGAAAAAGACTGACAAAAGTTGCGAAAAAGTGTGTAGATCACGGACAAAGGGTGCAAAATTCTGTGTTTGAATGTATCTTAGACTCGACCCAGTTCCGCCGCTTAAAATATGAACTTGAAGAATTGATAGACAAAACGGAAGACAGCTTGCGCTTCTACAATTTAGGAGATAACTATAAAAAGAAAGTAGAGCATATAGGGGCTACGGAAGCTTACGATATGGAAAGTCCTTTGATTTTATAAGGTGCGAATGTGAAGCTCACATAAAAACCCCGGGTCCTTCGCACCTCGGAATTTGTCGAAAAGCAATTGAATCAGTTACCATCAGTAAAAGTCAATGGTTGATACAAGCCTTTTTGGCATCAGTTTTTGCGACAATGTGTGAAATTGATATCATTAGAGTATCAATTACTGCATTTTTGCT # Right flank : TATCTTTCATTGTGCCTCCTATCGGATAAGCTGGTTACGCTCCATGTGAGTGCATGGATGATATGAAAAAGAAGTCTCGTTTCGTGCCCCGCCTAGCAGTAAATAGTGCAAATTTCTTTTTAACGGATTCCTTTTTCGACAAATTCCCCCTTACTTTTATGCAATAATTAACTAACATTACTATGTTGAAGCATAAAATTAACTGGGGAGTTGCTTATGAGAATTTCCATGAGTAAGTTTCTAAAACGCTATGTAACGATTTTATTGAGCTACGCAATAGGTATAGGGTTATTTTACGCTTTAGGATATAAGATGAGCGCTATGGGCATCTATGCAATTTTGACAGGAATTGTGACTGGAGAAATAATCAGCTTCGCATTATTAAAGCGCGAGAAATGAACTTATGTATCCCTTGATTGTATCAATATCAGGGGATTTTTCATGTAATTAAAAGGTCCCGTGAGTTTCCGCATGGGACCTCTATACCATTTGTTGGTGAG # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 1 1166425-1165916 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWJJ01000001.1 Paenibacillus polymyxa A18 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 1166424 32 100.0 36 ................................ CTACAGGACATGACAGGGAATCGACGTTTCTGGCCG 1166356 32 100.0 37 ................................ TTAGAACCCCGGCCGCCCTTGACTACACGGTAACGTC 1166287 32 100.0 38 ................................ AGCTAAATAACCTTTTGGTTCTTTGAAATGCGCAAGCA 1166217 32 100.0 38 ................................ AGTTAGGAGGGAAGTAACATGAGTAAATTGACGCCAAA 1166147 32 100.0 34 ................................ CGTTACAAAATCCTCGGTCCTGCTGAACGTGTGG 1166081 32 100.0 35 ................................ TTTCGGCAGCGGTAAAGCTCCGATAATTGTTTTGC 1166014 32 100.0 34 ................................ TACATCCCCAGCGGCCTGAGCGTCCTTGAGCAGC 1165948 32 81.2 0 ..........A.A........AC....A...T | C [1165923] ========== ====== ====== ====== ================================ ====================================== ================== 8 32 97.7 36 GTCGCACTCTGTGTGAGTGCGTGGATTGAAAG # Left flank : CGCTGAAAACAAACAGAGATAAAACATATCTACGCATGAAAAGAGAAGTTATGTCGCTGAACGAACTGGAACATGCGTACATAGCCAACAAACAAGACTATCAAGCCCGCAAAGCGTTTTTCAAGAAAAACAATCTATTTCCCTTTTCTGTGCATGTTTATGGGTAATTCGAGGTGCTTTATAGTCAAAAAAGAACAATATATAAATCTATTATATCGTATAAATAAGAGAGTTGTAGTTTTTTTGTGGTAAAATAGTATCTAAATTAAGTTGATTGACCTGCTCTTCAAAAATGGAGTGACCATAGGAAAGATGATTCGGTGCGAACCCCAAGCGCACATAAAAATCCCGGGTCCTTCGCACCTCGAAAATTGTCGGAAAGTATCGAATCGGCTATCTATCCGCAAAAGTCAATAGTTGATTCAAGCTTATTGGGCATCATTTTTTGCGACAATGCGTGGAAATGATATCCTATGGATATGAATTACTGCATTTTCGCT # Right flank : CGCGAGCAATTGCAGATTTTATGACTACTTTACGTAGTTACTCTTTTTAAGGGAGTATGACGTATTCTCGCAAAGTATCGATACAAATCTTATTTAACCTGGCTCCCTTTTAAATCAGGAGAGCCTTTTTTGTCGTGATTTTTATAGTCAGAAAAACGAGTTTGATATGGCGACAGGTGATATTAATTCCAATCCAATAGATGTTTCCAACTACGGGATTTATGTTAACAATTATGAGCAAGGAACTACTTCTCTTCCAGAAAACATAGGAGCTCGCAACTCGACCAGAGCTGAAAAGGCATAGGCGCTTGTAGTTCATGCCAAGAAGGGGCCTGATATCAAGTTAAAGTACCGGCCAGACGTAATAAAGATACATTAAATATGAAGCTAGGAAAGCACAAGTTAGTATTCAGCCGTGTTTATTCACCAAGGATAAGAAAATGGTCTTATTTTCACAGATTACAAATAGAAAATCTTTTGCATAATATATTCCAATAGAA # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTGTGTGAGTGCGTGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1169123-1168757 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWJJ01000001.1 Paenibacillus polymyxa A18 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1169122 32 100.0 35 ................................ AAATCACTGTAAGTCACAGACATATCCGAAAGCAG 1169055 32 100.0 34 ................................ AGGTCCATCGACTGGTTCCTCTTTGATTTCCTCA 1168989 32 100.0 35 ................................ TATGAGTTAGGGGAGGCCATCGTCCCGGACGCAGA 1168922 32 100.0 34 ................................ AGTCACAATGATACAACCAGCAGTAACATTCATC 1168856 32 96.9 36 ...................T............ TTTTGTCATGGGTTGATCATCCTCACTAATAATATT 1168788 32 90.6 0 ........T..............A.......G | ========== ====== ====== ====== ================================ ==================================== ================== 6 32 97.9 35 GTCGCTCCCTATGTAGGAGCGTGGATTGAAAC # Left flank : GGATAAGGCTTTGTAACGCGTGCTGTCGCTCCTTATGTAGGAGCGTGGATTGAAAGGTATATAGGGGTATAGGGTAAGAGGCTGTAGCTCCCTTTATGGGAGCGTGGATTGAAACGGCTTGAGCTTCCACGCCTTCATTTCCTCTTTCTGGGTCGCTCCCTATATGAGAGTGTGGATTGAAACAGACGCATGGTGTAATAACCCCAAGTAGGCTGAAGAAGTCGCTCCCAGTATTGAAGTGTGAAATTTAAACTCAGCTCGCTATACTCACATCCGTAAGTTCGTTGCTTCTCACAGGGTGATGTACAATAAACAATTTAACCTTTAATTTGGTGCGAACCCTAAGCGCACATGAAATCCCCAGAACATTCGCACCTCGCGCCAGACAAGGAATTCAATGATTTTGGGGTAAGATTTTTAACATTTATTGATGAGTTGAAAAGAGATTCGTGAAAAAGCGTTTACAAATCCTTGCTGGATAAGGCTTTGTAACGTGTGCT # Right flank : TATGTATTTCTCATACCGCACATATAGCACAGCTATGACGTTCCTCATTTTTCATTGAAATACACAAAAAGGTTTGCCCTAGTACTAGGCAAGCCTTCTTGTGTGCTGGTTGTAATATGGAAATAGGTTCAAAATGAACTAACATTTTTATAGACGTGGAACTGTTCGGAACACCACTCTAAAAAGTGAAACATAAAAAAGAAGCCCGTTTTGAAAACAGACTCCTTAATGTACTCCCACGTTAATATGCACAAACCACACTATTCTGTTTCTTCAAACTGCATTAACACGGAAATGTCTTTGATCTCCAGAGCATGAGCGATCTTTTCAAGCATAAGCAAGTTTACTTCTTGTCTCCCATTTTTACAAAGCTGTGAGATTCTTGCTTGATTAACACCTGATTTTTCCGAAAGTTGCATTTGCGTCATATTGCGCTCTTTTAACACTTCTTTAAGCCTTATATTTAATTTTAGCAAGAAAAAGAAACCTCCTAAAAACTC # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTATGTAGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA // Array 3 1178156-1177922 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWJJ01000001.1 Paenibacillus polymyxa A18 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1178155 32 96.9 36 .......T........................ AGAAGCCAATAACCATTGGGCGCTTGGAATTTTGTA 1178087 32 100.0 36 ................................ GGGCCTCTGTCTGGCTCAGTGGTGACTGATATTATC 1178019 32 96.9 34 .............................G.. ATCCTATCTTCTTCCCTTCTTATTGGAGTCTATG 1177953 32 81.2 0 ........C...A.G.....A.AC........ | ========== ====== ====== ====== ================================ ==================================== ================== 4 32 93.8 36 GTCGCTCCTTATGTAGGAGCGTGGATTGAAAC # Left flank : TGAGTATATTGAGAATTATAATGACTTAAAAAAGAGCCTAACGGAGAAATACGGCAAGCCTAGCAGTGATGATACCCTTTGGAAGGGAGATTTATACAAAGGCACGCCAAGCCAATGGGGAATGGCTGTAGCGACAGGCGAATTGCATTATCAGACAACTTGGGAGACAGAAGATACAGAAATTTTGCTTGATTTACAAGGTGATAATTTCGAGCCCCGCCTGAGTCTAGTGTATGGTAGCAAGGAACTACAGCATTTGAGTGAGCAGCAAAAGGATCAGGAATTGAAAAAGAATTTATAACAGTATAAGGCATGGATTTCATAGGCTTTAAGTGCGAACCCCAAGTGCACATGAAATCCCCGGAACATTCGCACCCCGCGCCAGACAAGGGATTCAGCGATTTTGGGTTGTGTCTTTTTACATTTATTGGTGAGTTGAAAGGACATTCGCGAAAAAGCGTTTACAAAGCCTTGCTAGATAAGGTTTTGTAACGCGTGTT # Right flank : CAGCCAGAACTGGCGACTCGTCACTCTCTGGACGTGAGAGGTACAACAACCAATAATTGTCCTTTGATCTTGTGAAAAAATAAAATAACCCAAAAGCACCGAAGGTTCTCCTGAAACGGGAACTTGGGTGCTTTTTGGCTTTTTGTATTTTAGGTTAGCGAAATTCTCCAAGTGATAGAGAACGTATGCGAGAATAATGTAGAATCATGGAAAATAATCCTGTAAAATTTTCCATCATAGAGTATAATGTTCTATAAAAGAGATACTTTAGCCTATTTACAGTTGTTTTTTCTCGGGAAATAGTTCATTAAAACTATATAATTAGTCATGATGAGAGGTGAGTTTATGAACTACAAAAATCGCATTTTACCGCCTGAACTGAAGGATGTAAAAGAAAATTTAATAAGTGGCAGAAAGCAATCAAAAGAAAAGAAGCCCTACGAGATCAAGATTGTCACCCCCATGTTCGGAGGCGGCAACGAACCGGGGGAATTGGATGA # Questionable array : NO Score: 6.74 # Score Detail : 1:0, 2:3, 3:3, 4:0.69, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTTATGTAGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCACTCCTTATGTGGGAGTGTGGATTGAAAC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.80,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //