Array 1 42786-46076 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJQB01000115.1 Methanosarcina mazei strain 1.F.A.1B.3 scaffold38_1_size52992-refined, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 42786 37 100.0 37 ..................................... AGTGACGGGGAGACTTGGAGACTGCCCGCCGGCACGA 42860 37 100.0 35 ..................................... ATAAAATATATCGGCATGCGTATCCAGAATTTCAG 42932 37 100.0 35 ..................................... TCAGAGGCGAGATGCTTGATACTGAAATTGGGTAT 43004 37 100.0 34 ..................................... GAAATTACGCACCTTATAGACACAAACTTTTCAA 43075 37 100.0 34 ..................................... CCCCAATCTACTGAGGAGATCCCGAATCCCTGAG 43146 37 100.0 34 ..................................... CGTCTGTGGGCATGAATCCGGCGTTTGTTACCTG 43217 37 100.0 35 ..................................... TCATAAGATACTGTAAATAGATAGGATCAAGGGAC 43289 37 100.0 39 ..................................... TTACATTATACTCTATTTGTGTTATTATATCTATATTAT 43365 37 100.0 35 ..................................... TAAACACTCTGCAACAACTGAGTATGCTAATCCAA 43437 37 100.0 35 ..................................... AGAAACTCAAAATCTGCGTTTTCGGCTGTGATGCA 43509 37 100.0 36 ..................................... CGGCGACTCCGGTAAATTCATACAAAGTTGTAGAAG 43582 37 100.0 36 ..................................... CTATTTTTAGAAGGGATCTATGATATCAATACCCGG 43655 37 100.0 37 ..................................... AGTTCGTGTCAGGGAATAGTTTGTGATAATCTGATGT 43729 37 100.0 34 ..................................... TGATAACGCCTTTTGCTGCATCCCTTGAAGTGTT 43800 37 100.0 35 ..................................... TTTCAATTACCACATTAGCTTCTAACTGTTCAATT 43872 37 100.0 35 ..................................... ATGCCCAGCCCTCGACACCCGGACATTGATCTTGA 43944 37 100.0 34 ..................................... AAAAATTTAGTTTTGACAGCAAGCCGGGATTCTG 44015 37 100.0 35 ..................................... ACTGTTGAATTAATTTCGATGTCGTTTTCTGAAAA 44087 37 100.0 36 ..................................... CAACGGATTAGGACCACGAAGAAAAGAATTTTGAGT 44160 37 100.0 36 ..................................... CAGATGCTACTCTTGCGGCATCGGGAGACAGTCTCA 44233 37 100.0 35 ..................................... CCCGGCCCCGTTGTGACCTCACAGAATATATTCAT 44305 37 100.0 35 ..................................... TTAAAAAACACTGTGAAAATCTGAAATACATTGAT 44377 37 100.0 34 ..................................... CTGTCGAATGTGTCTGCAAATCTTGTGTTAAGCG 44448 37 100.0 36 ..................................... ATAGATTGTTCAGTTGTCAATCCGTTGTCAGCTTGT 44521 37 100.0 38 ..................................... TTTATATGTTAACACTGTTAACGACTGTCTCAAAAAAA 44596 37 100.0 35 ..................................... TAAAAAAGAAATCAATAAGAGAATAACGTTTTTCA 44668 37 100.0 35 ..................................... TATCTTTGAAAAAATCCGTATGTACGGGAAGCTTC 44740 37 100.0 36 ..................................... CTTCATCTAGTTTATTCCGCAAAAGCTCCTTTTCTG 44813 37 100.0 37 ..................................... GTGGTCCTATGATCAATGCAAGATAGCCGGGATTGAT 44887 37 100.0 36 ..................................... TTTGGATGGCTTGCCGTCCTCTATACCTTTCATCTT 44960 37 100.0 35 ..................................... CAGCTAAGGTTTTACTCATATCGTGTGGCTCCGAC 45032 37 100.0 35 ..................................... ATTGATACGGAAGTGATGCGGTATAAGCTCCCGTT 45104 37 100.0 34 ..................................... CTGCCCTCAAGGATCAGGCTTTAGAGGTTGCAAA 45175 37 100.0 38 ..................................... TACCTTATTGATACTTTCCCAGATAGCGTATAAAAGCC 45250 37 100.0 36 ..................................... AAATTGCTGTACCTTCTATAAAGTATAATGATTTAT 45323 37 100.0 35 ..................................... TAAAGAGGGATGATAAATTATGATTACAATCGTAG 45395 37 100.0 36 ..................................... CGTCGGTGGGCATGTATCCCGCGTTTGTTACCTGTT 45468 37 100.0 31 ..................................... TGTCACAATTGTAGTGATATTAATAGCCCGT 45536 37 100.0 34 ..................................... TCATCAGAAAGCCCGCGTGAATACTTCATTTTCT 45607 37 100.0 34 ..................................... TTGCAGGTTTCACCGGTTATGTCACATGTTACAG 45678 37 100.0 35 ..................................... CGGTTCAGGACTCGGTAGAGCACTATTCCCGAAAG 45750 37 97.3 35 ..................C.................. TCTGAGGAGACCACTAAAGCCAGTCGGACCCACTG 45822 37 97.3 36 ..................C.................. AATGTATACGTCCTATATTAACAGGTATAAAAACGG 45895 37 97.3 36 ..................C.................. ATACTTTCATCAGTCAATATTTCATTTTCGTATAGA 45968 37 100.0 35 ..................................... AATGGATTTGGAGACCGTTCTCTACTTGGACTTCT 46040 37 91.9 0 ......A...........C................G. | ========== ====== ====== ====== ===================================== ======================================= ================== 46 37 99.6 35 ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Left flank : AGAGAGTGATGTTTTTATTGCCTCAAAAAAGAACCATATAAAGGGAATTGTTGACGAAGTTTTATTTCTGGAAGATGGAACAGCAGCTCCTCTTGAATACAAATTTGCCGAATATAAAGATAAAGTATTTAAGACCTATAAATTCCAGCTTGTGTTGCAGGCACTTCTTATTAGAGAAAACTATAATATTGAAGTAAACCGTGCGTATCTTTGTTTTACTCGCAGCAACAGCCTGGTCAAAGAAATGGAAATCACCAGCTCTGATTTCAAAAAAGCCGAGAAAATAATTGAGGAAATACTCGATATCGTTCAAAAAGGCTTATATCCCAAGACTTCCAGATCTTCTAGAAAATGCGTAGATTGCTGTTACCGGAATATCTGCGTATGAGAAGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGTAAGAATTTTAGCCCCAAAAAAGGGCTCATTTCAGGCCTTTTCTGGCCAAATAACGGAAATTTTTGCCCT # Right flank : CTTTTGTTATTGATACCGAAACCGCCTTTTCCGTTGAATTCGCGAGCATGGTCCATTAAGAGCCTATCCGAAAAGTGTTGTGACCTGTGTAGATGTCCGACACTAATATTTATCGAAACTTCTATAACAGCCAATAGTATATCCTAAGTGTGGTAAAGAGTCTTAGAGACATCCGGAAGAGAAAAGGGGAGAGCTGAAAAAAGATAAGTCACTCTTTTCCTGATCTTGAGCGTAATAACATCCTGAAAGGAAGTGTGAAGATACAAGACATACAGGAAGAGACCTAAACTGTATTATAGCATAATAAGAAAAGAACTTCTGGCAGGAGGAATAAAAACTATGACAGAAATGACTCTAATCGAAGCACTGAAAAAACTTGCATTAATCACCAAAAAAGGACTGGATGAACTGATTCATATCCCAGGTAATACAAGTGGACCTATTACAATTGGTGAGGCAATTAGAGAAATACAGGATCACGATTCTGACATTTCTGAAAC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 15296-13650 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJQB01000080.1 Methanosarcina mazei strain 1.F.A.1B.3 scaffold40_1_size38768-refined, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 15295 37 97.3 36 ..................C.................. AAATTTTCACAGTGTTTTTTAATAAATGTCTGACTG 15222 37 97.3 37 ..................C.................. ATAAACTAAACACAGAAACGATTCTAGTAGACGGAAT 15148 37 94.6 37 .....A............C.................. TATTAAAAAATAGTATAAATAGTAAGTCGGTTGAAGT 15074 37 100.0 36 ..................................... TTAAAAAATTTCTTCTCCTTTGCAGCGTACCATTTC 15001 37 100.0 37 ..................................... ACCTGTTTCATTTATAAGCCTCTCTGTCTTTTAATTT 14927 37 100.0 37 ..................................... TGAAGGAAAACATCCGTGAGCCTGTACGGATACCCTT 14853 37 100.0 35 ..................................... CCCATTCGTGGCCCACCCCTCCAGGGTTTGAAGCT 14781 37 100.0 38 ..................................... TAAAAAAACTTGATGAGATTATTAACCCCAGCCCAGCA 14706 37 100.0 35 ..................................... TTGTCCTTGGTTTGGATTGTGAAGCCTTGAAGTAA 14634 37 100.0 34 ..................................... ATGAAAATCTAAACGATGAATCTAATACACTTCC 14563 37 100.0 35 ..................................... AAAGAAAGTATGACGGCACAGCAGGTATAATTAAC 14491 37 100.0 34 ..................................... TCGTTATCGATTATACTGACCGTGATAATTTACG 14420 37 100.0 37 ..................................... TCCCTGCATTTCTGATCGTATTTTGTAAAAGAATAGA 14346 37 100.0 38 ..................................... GTACACTTAGCATGTCCTCTAAACTCGCTTTTTCCGTT 14271 37 97.3 39 ..................C.................. CACGGTAACGTTTTTTTATGTCAAAAAAATAATCCGGAT 14195 37 97.3 34 ..................C.................. CTTGGTTACTTTGTGGACCTGGGCGAATCCACAG 14124 37 97.3 38 ..................C.................. AATCTGCTATATTATCCAGTATTACTCCATTAATTACT 14049 37 97.3 34 ..................C.................. TAACTCTGAGCATAAGAAAGAATTTCGTGATCTG 13978 37 97.3 36 ..................C.................. TTACAACGTCTGCAAGCTCTTCTTTCATGTGTTCGT 13905 37 94.6 35 .....C............C.................. TTCTATGAACGAGATTCCTGTTACTCTTTTTGAGA 13833 37 97.3 35 ..................C.................. TTTCGAAGAGCGTTTCTTACTTCTTCTGCTTCTTC 13761 37 75.7 37 TG...A...GT..C....C.......G.........T GCAGACGAAAAACGCAAATAAGAGTACAGACAAATTC T [13745] 13686 37 83.8 0 .....AT.A..................A.....T..T | ========== ====== ====== ====== ===================================== ======================================= ================== 23 37 96.8 36 ATTCGTGAGCAAGATCCATTAAAACAAGGATTGAAAC # Left flank : AGTAAATTCATCGCATAAATCAAAAGCCAGATCAATCAGGTGCCTATAAACATCGTTTTTGGGTTCAGAAGTAATATCTATCAAGTTTCTCCTGTACATCAAGTTCTCTCCGTAAAAATTGATTTGTAAGACCATACCATGCAGATACGATTAAATCATTAATTATTCAAAGGAATCTTTGAATTATGCAGACATACTCTGGCAAAAGACAAATCTGTATAAAATTATTTAGTTATTAAGTACATAGTTCTTTCTCTAATTTATTCATTTTTGTTGATTCTTTGCTATATCAGGAAATGAAAAGGAATATGCACAAAAATACCAATCAAAAACGAAAGTTTAATAAAAAGAAAAGCATATGTCCAAATGTTTATGAATTAATGAAAACCCTGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTTAGCCCAGAAAAAGGGCTTATTTCAGGCATTTTCTAGCCAAATAAAGGAAATTTTTGCCCT # Right flank : TCTATTTCTTCAAATTTTTCTAAAGAGGTTAACCAGAATGTCTAAGAAAATCGGCAGAAATGATCCGTGTCCATGTGGTTCAGGTAAAAAATATAAACATTGTTGTTTAGGTAAGAAAGCAGCCGATGCGAATCTAACTACTTCAAAATCTAAAACTAGTCCAAAATCTGAAGCTCAAGTCATTAACCGGTTAGCCATTATGAGGTTTGAACAGAAATTGCAGGATAATCCCGAGGAACTGGAAAAAATTGGTAAAGAACTTGAAAAATATTCCGGTGACAGGGATGTGGACTTCAAAGAGTTTATTACAACGGGAGCGCAGAGGGTCACGAATACCCCTTCCTTTAGGTAGGGGATGAAGTGAACCCTCGCCTCTTCGTTTTTCTCTNNNNNNNNNNNNNNNNNNNNNATGCTTAATTATCTGTCCCCGAGTAACCGGGCGGGCGGCCCGAAGCATACCCCATCCTTTAGGGTGGGGTGGCCGCCCGCAGTTTGATTCA # Questionable array : NO Score: 8.84 # Score Detail : 1:0, 2:3, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.74, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCATTAAAACAAGGATTGAAAC # Alternate repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA //