Array 1 248-36 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYFV01000268.1 Salmonella enterica subsp. enterica serovar Bovismorbificans strain 02-0459 NODE_268_length_269_cov_0.801075, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 247 29 100.0 32 ............................. AGAAAAACCGCTTTGTAATTACTGGTCATGTT 186 29 100.0 32 ............................. CGTGTCAGCCAAGGTGCAACGCTACTACGCAC 125 29 100.0 32 ............................. GAAGGTGTTTTTTATTCAAAAGATAGGATACC 64 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CAGCGTGCTTGGTTCTGGTAA # Right flank : GCCAGTTTCTAACGATATCGTCCACCAGCTTCGGTG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [28.3-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 310172-311115 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYFV01000001.1 Salmonella enterica subsp. enterica serovar Bovismorbificans strain 02-0459 NODE_1_length_484334_cov_4.78968, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 310172 29 100.0 32 ............................. ATAACGGCCTCGAATTGGCTGTGAACAACCTC 310233 29 100.0 32 ............................. ATTGGAACAGCATGGGTTGTCTTTGGTTTCGC 310294 29 100.0 32 ............................. ATCGATGTCTTTTACCGTATACGGCTCGCACG 310355 29 100.0 32 ............................. CGTCTCATTCATTTCCTGCCCGGTATTTGCAA 310416 29 100.0 32 ............................. CGTCTAATTGCGCGGCTTGACGAGATGATTGC 310477 29 100.0 32 ............................. TCGTGCGCAAACCAACTGAGTACGAAGTCAAA 310538 29 100.0 33 ............................. AATACTACAGGTATTTATATTAATCAATATGGC 310600 29 100.0 32 ............................. ATGCCATGTACGCCCCGTTTTTCTCAGCGACC 310661 29 100.0 32 ............................. AAAACAACAAACACTGGAAAAATGGAAGGGGC 310722 29 100.0 32 ............................. TCGCGCGAGATTTATTTAAAGAGGGTAATTCA 310783 29 100.0 32 ............................. TCCAGGCTGAATAATTTCGGCGACGGCTTCGG 310844 29 100.0 32 ............................. CTGAATGTCCAGAGTGTGGCAATCACTTTACA 310905 29 100.0 32 ............................. CTGATAACATTCGGCGCGCTGGAAAATTCAAG 310966 29 100.0 32 ............................. TGGAATCAAGTTTTACTCGCTGGCTGAGGGCG 311027 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 311088 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 16 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATAGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 327680-328259 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYFV01000001.1 Salmonella enterica subsp. enterica serovar Bovismorbificans strain 02-0459 NODE_1_length_484334_cov_4.78968, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 327680 29 100.0 32 ............................. TAGGAATAGCTCAACCCGTTGATTATTTTGCT 327741 29 100.0 32 ............................. GGGTTTACTAGTATGAATACCCTGAATTTAAA 327802 29 100.0 32 ............................. CCCAACGAATCCATTTTTAAATGTCTTCGTAT 327863 29 100.0 32 ............................. TTAATCCCCACGGCCAGGAGGTATTGATCAAC 327924 29 100.0 32 ............................. TCTTTCAGGCATTGCGTGAAGAACTTCCTGAA 327985 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 328047 29 100.0 32 ............................. AAGCCATTGACGCAACGGAAAACGCCAATGCT 328108 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 328169 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 328230 29 100.0 0 ............................. | A [328257] ========== ====== ====== ====== ============================= ================================= ================== 10 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATTCCTCTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGA # Right flank : GTTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCTTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGTGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 608-396 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYFV01000048.1 Salmonella enterica subsp. enterica serovar Bovismorbificans strain 02-0459 NODE_48_length_1451_cov_19.3604, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 607 29 100.0 33 ............................. CACTACTGCAGGCATATTATCAGAACGATGCGA 545 29 100.0 32 ............................. AGCGTCTGGACGAGCTGATCGCCCGTGGTCAC 484 29 100.0 32 ............................. CGACAGTTTTTTTAGTTCTTCATTGGTTTCAA 423 28 79.3 0 .................A..-..G..GAC | ========== ====== ====== ====== ============================= ================================= ================== 4 29 94.8 33 GGTTAACCCCTGCGGGCGGGGATAGGTCG # Left flank : AGTGGAAGATCTGAATGTGCGGGGAATGATGGCAGCGCCAAAACCGAAGCCAGACCCGGATAACCCCGGTGCGTTCCTGCCGAACGGCGCTAGCCGCAAGCGCGGGCTGAACCGTTCGCTGGCCAGCGCCAGCCTGGGTGAGTTTTTCCGGCAACTTGAGTACAAATGTGCATGGCGCGGCGTCGCGCTGCTGAAAGTTGGCCGCTGGGAGCCGTCCAGCAAGCGCTGCAGCAGCTGTGGCGAGATTAATGAATATTTGACACTGGCAGACCGCCGGTGGCAGTGCCCGGTGTGCGGCGCAGAACATCACCGTGACATTAATGCCGCGGTGAATATTGCTGCCAGGGCAGTGTAACGAATAAAAATAGGGCGCGGCCCGCCCGAATTAACGCCTCCGGACATGGCCAGTGTGCTGTGGCTGAACGAGGAAATTTCCGCAAAAATCTGGTAGAAATTCAGGCGTTATTTTTCGCTATAGATTTCAGCCAGATGCCGCCAGA # Right flank : CTAAATCATCGTTAAGCTGCGGCACGTAGGGCCGCGGAAACTTAAATTTTAATTTGTAATAAATCCATTGTTTAATGTATTTAATTTAACCATATGATTTAATTGATTTTAATTTACTGCTTCATTGTTTGAGACGCTTGGTGATTTTTTCCGTAACTATGAAGTTTTTTATGTGTTTTTACTAATTGATTCCATGTTGATTAACCATCCCAATTATCGTAACAATTTATAGTAATGAAATTGTTAGTATTATATTCCCCTCCATATCATCACTTAAAGCCACAGCGAATAATTTTCGTAACAATTTCACAAATGATATACACCCCCTTTTATCGTAACAAAATACCGTAAATCCAATCTTCGTAACATAGAAAACACTTATCGTAACATATTATC # Questionable array : NO Score: 2.60 # Score Detail : 1:0, 2:0, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTAACCCCTGCGGGCGGGGATAGGTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.90,-7.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //