Array 1 196-33 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFLQ01000191.1 Campylobacter fetus subsp. testudinum strain 13S00388-15 contig00197, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 195 30 100.0 36 .............................. GCATTTCTTTAAAGAAAATGCAAACGGCAATTTTTA 129 30 100.0 37 .............................. AAATTTTGACAAAGTATTTGCTTTCAAAAATATTTGT 62 30 96.7 0 ..............C............... | ========== ====== ====== ====== ============================== ===================================== ================== 3 30 98.9 37 ATTTCAACACAAATATTGTCATTAGCAAAC # Left flank : TTGTCATTAGCAAACTTGAATTTGCAAATATTGTTTCTAATTCTACACAGA # Right flank : CTATCTAACCTCCTTTTGTTTTTCTTGCCTCAT # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCAACACAAATATTGTCATTAGCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 1 11169-9889 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFLQ01000032.1 Campylobacter fetus subsp. testudinum strain 13S00388-15 contig00032, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 11168 30 96.7 34 ...............G.............. TAGATTGATATTTGACGGGAAAAATCTAAGCACA 11104 30 96.7 35 ...............G.............. TCTATCATTTTAAATTTCCTTTTTTTCTTTATTCT 11039 30 96.7 36 ...............G.............. TAATATCGGCTGGGTTTATAATAGCCCCATTGCAAC 10973 30 96.7 36 ...............G.............. AGTATAGATTTAAAACAAGCAAATTTGAAATTGGAA 10907 30 96.7 35 ...............G.............. ATTTGAACTACAGGTACATTTATAACATCAAATAA 10842 30 96.7 37 ...............G.............. ACTGTCAAGCACGACTATAAAAAGAGCTTTGATATAG 10775 30 96.7 36 ...............G.............. TTTGGAGTTTTAAACAGAGATTTAGTATCTCCATAC 10709 30 100.0 36 .............................. AATTGATATATGCAAATATATCTCTATTGTAAAGCC 10643 30 100.0 35 .............................. GGTGTTGAAACGTCTATTTACTTTTTAAAGGATGA 10578 30 100.0 36 .............................. AAACACTACACCACCAATTACCCCTAATAACACTCT 10512 30 100.0 37 .............................. TTGGAAAACTCCTCCGTCTTAAGCTTTACTTGTGCTT 10445 30 100.0 35 .............................. ACTTTATTCATTTATTTATCCTTTATTTTTTTTAC 10380 30 100.0 36 .............................. TATTTAGGGAGAATAACATCATTTGCCGGATTTACT 10314 30 100.0 36 .............................. ACCTAAACAAGAAATTATATCTCCTAATATTCAAAA 10248 30 100.0 36 .............................. AAGTAAGGATTAATTTTGTCTGATAGTTTTGTTAAT 10182 30 100.0 35 .............................. TATCTTTTGCATTTTGTATATTAGGCGCAGGTTGA 10117 30 100.0 36 .............................. AAAAGAAAATATTAGCACTGATAAGGAGTTGATTGA 10051 30 96.7 36 .............................T ATATTATAAATAGGCAGAAACAAGAATTAGAGAGCT 9985 30 90.0 37 ......................A..A...T AGCTTTTTTGAAAGCTGTTTCTACTGCTAAAGTAACA 9918 30 73.3 0 .......G..A....AGC....A..A...T | ========== ====== ====== ====== ============================== ===================================== ================== 20 30 96.8 36 GTTTGCTAATGACAATATTTGTGTTGAAAC # Left flank : GATTTGTGTTGAAACAGCTGACTTGATAGCTAGTCGTATTAAAAAAAGA # Right flank : CATATAGAGCTCCAAAGTAGCAACATTCAAAACGCTAAAAATGTAAGTGAGAAAAAAGCAGCTTCTGCGTGGAGAAGTGAGCCTTTTTATGGTAAAATACTTCCAGCAAACTTTGGGCTTCCGCCGTATCATTTTCGTTGTAGAACTGAGCTAGTACCAGTATGGATAGATGAAGAAGAGATCGACGGTAAAATTACTAAAAATACATCTGCTAAAGCAGAAGATGAGCTTTTTAGACATATTGATAGTATGGGTTATGAAAAAGTTGCTAAAGCAGATATCTATACGCACGGACAAAGCGGATACATTAAACCCAGTAAAATAGAACTGATATCTGCTATGAATAATATTAGCAACCTTAAAACTAGTATTAACAACCCTATAAGGCAAGTTGCATTAAGTGGAAAAATTATCATCATATATCAAGATGAGAGAATTTGGACGGTTATTAAAAAAAATAGCGAAAAACAAGCAAAAGAGTACTTTAAAAACAACACGGA # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.80, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAAC # Alternate repeat : GTTTGCTAATGACAAGATTTGTGTTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 127324-126035 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFLQ01000003.1 Campylobacter fetus subsp. testudinum strain 13S00388-15 contig00003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 127323 30 100.0 37 .............................. TTAGCTCTTGCGATGGCTTTATCAAAATTCATATTTA 127256 30 100.0 35 .............................. TTTTTTCTTGCTGTGCGTTTAAAGCCTCTTGCTGT 127191 30 100.0 37 .............................. TGTGGTAGCCCCCTGCTTAACCAGTTGTTCGAAAGTA 127124 30 100.0 36 .............................. AGTTTCCTACGCAGGACAAAAGAGCGCATACTCTGT 127058 30 100.0 36 .............................. GTTTTTTCCTTTAAAATATCGTGAGCTTCCTCTTCC 126992 30 100.0 35 .............................. CAATTTTTAAAGATATTCTCCCCTAGATTTGATCC 126927 30 100.0 34 .............................. TTAAAAGATAGGAAGCAATTTACAGAGGAAAAAA 126863 30 100.0 35 .............................. ATCTCTATGGCTTTGCTTTCTTTTAATGGATCTAC 126798 30 100.0 36 .............................. GAAAATAAGTTAGTTAAACATAATTTTAAAGAGTCT 126732 30 96.7 36 ...............G.............. ACTTTTTTCACTTCAGTTATTGTAGTCATTCCAGGG 126666 30 96.7 36 .............................T TTGCCTTGTGTTAGTCTTATGGTTATTTGGTTAGAA 126600 30 100.0 35 .............................. ATAATTATTGAAGAATATTTTTGTTTTAGACTTCT 126535 30 100.0 38 .............................. TTGCAGACTTTCCACTCTACTTTGTCTTGTTTGCCATT 126467 30 96.7 37 ...............G.............. TAAAAATTGCCGTTTGCATTCTCTTTAAAGAAATGCT 126400 30 100.0 36 .............................. ATTTCTGGGGTCATACTCTCTCCGTCTGCGATAACT 126334 30 100.0 36 .............................. TTTGTAAGCTTGTTTAACTCTGTAGATGCAAATCCA 126268 30 100.0 41 .............................. TTTGCGTTTTCGACCATGGCGATTAGTCTATCTGTATCTCG 126197 30 96.7 35 ...............G.............. TAACTTCGTCTCTTGCATATCCTGCAAAAAACATA 126132 30 90.0 38 ......................A..A...T AGCTTTTTTTGAAAGCTGTTTCTACTGCTAAAGTAACA 126064 30 76.7 0 ..........C....AGC....A..A...T | ========== ====== ====== ====== ============================== ========================================= ================== 20 30 97.7 36 GTTTGCTAATGACAATATTTGTGTTGAAAC # Left flank : TATTTGTGTTGAAATTTGCTATTTGCAAATTTTGCAGGGACGGCTTTACC # Right flank : CACATAGAGCTCCAAAGTAGCAACATTCAAAACGCTAAAAATGTAAGTGAGAAAAAAGCAGCTTCTGCGTGGAGAAGTGAGCCTTTTTATGGTAAAATACTTCCAGCAAACTTTGGGCTTCCGCCGTATCATTTTCGTTGTAGAACTGAGCTAGTACCAGTATGGATAGATGAAGAAGAGATCGACGGTGTAAAGATGAAAAATACAAGCCCATTAAGCAAAGATGAAGTAGTTAAGCACATAGACAAAACTGGAGTGGAGAGAGTTTGGAAAAAGAGCAATACACATATTTATGAAAAGCACGACACAGAGCCAAAGGATGTTGTAAAGGCTTTAAACTCTATAAATACAATGGCTAAAAATAAGGATAATAAATATATAAACGCCTTTAGCGATAATGGGTATTTTATAGTTTTTAATGGCAATGAGATAGTGACTTGTTTTAAACATAAAGATGGTAATAAAGCTACTTTTAATTATTTCAAAAACGCTTCAATATA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 914-33 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFLQ01000039.1 Campylobacter fetus subsp. testudinum strain 13S00388-15 contig00039, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 913 29 100.0 37 ............................. AATAAGAGGATTGTCTGAAAGATTTGGGGATGAGCTA 847 29 100.0 36 ............................. CCTGCAGGCTTGTTTATTACACTAAGCGTAACTGCA 782 29 100.0 37 ............................. TAAATTTTTATATACTCTTTGGGGTGATTTAAAATTA 716 29 100.0 36 ............................. ATACGATATCAACCGGCAAAACCAATCTATTTGTTA 651 29 100.0 37 ............................. TTCTATTTCCTTTTTCAATAATCTTGTTTTGATATCG 585 29 100.0 37 ............................. GGTAGAAACAAAGCTACCTTATTACGTTGGATTTTAG 519 29 100.0 37 ............................. GCTTGGCGACAAATATGAGTACGAAACAAAGGGACTG 453 29 100.0 37 ............................. GAATTTCGGATCTAAAACACCAATAGCTCCTCCAAAG 387 29 96.6 36 .............C............... CTAAAAAATGAAAGTGAATACCAAACATTCGCATTG 322 29 96.6 36 .............C............... CTCTTTTTTTAATACGACTAGCTATCAAGTCAGCTG 257 29 96.6 36 .............C............... CTTATACGAGAAGAATAATACTCTCTTTCTTCCCAG 192 29 96.6 37 .............C............... CCCGGATGAGTTAGACGCCCTAGCTATGCTTTTTTAG 126 29 96.6 36 .............C............... TATCTAACCTCCTTTTGTTTTTCTTGCCTCATATTG 61 29 96.6 0 .............C............... | ========== ====== ====== ====== ============================= ===================================== ================== 14 29 98.5 37 TTTCAACACAAATATTGTCATTAGCAAAC # Left flank : AAAACTTTATAGAAACTTTGGTATAGTTGATTTCTAGCTTCATAAGTTTATGGTTTCTTTTTTGGCTATCTTTAACTCGTCGTCGTTTAGATGTTTTAGACTATCTAGTATCTCGTCGCTCTCTTTTTTATCGCAGTAACTAAGCGTAGTTAGCCTGTATGATAGCGAACCTTTGGTTTCTTTTAATTTTTGATCTAATGCATTTCTGATAAATTCAGCCATAGTTGTTTTGCTATTTTTTACGATTTGATTTAATTGTGCAAATGTGTCATCATCTAACTTCAAGCAGTAACTTTTCATAGTTTATCCTTTTTATTTTATTATATACTATATATACTTATATATATCTTATATAAATAACCTCTTGCCTAAGTTTTCAAAATTATATTTTTTACTATTTTAATTTACCATTTGAAAAATAGTTTAATAAATTTCAGCTTTTTTATAAAGTGTATTTTCAAGTTGGTTATTTAGAAGTGGTAGAATAGGCGTTCGACAAG # Right flank : CGCTTCAAGCTCAGCCGTATCGTTTGGCACTTC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTCAACACAAATATTGTCATTAGCAAAC # Alternate repeat : TTTCAACACAAATCTTGTCATTAGCAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA //