Array 1 96793-94933 **** Predicted by CRISPRDetect 2.4 *** >NZ_PQEV02000018.1 Escherichia coli strain ECPET13 18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 96792 29 100.0 32 ............................. CTGCGCGACCAACGGGAACAGGGCAAATGCGA 96731 29 100.0 32 ............................. TGGATATCTCCGATTCCCTGGCTAAATACGAG 96670 29 100.0 32 ............................. TGCTGTACGCGCTGAACACGTCGCTCAGTGCC 96609 29 100.0 32 ............................. CGGTCCGCATCGTCCTGATTGTTCTTACACTG 96548 29 100.0 32 ............................. TCGCCCGGCGTCAGCAGATCAGCGGCCTGCCA 96487 29 100.0 32 ............................. CAGATCGCGCAGCGTCCCGACATCCTGCCGTA 96426 29 100.0 32 ............................. TCAAACATTTGCGCGTTACTGCGTGGATTTGC 96365 29 100.0 32 ............................. TCACGACGCCCGCCGCACGTTCGGCAGTGTGG 96304 29 96.6 33 ............................T GGCCTGGATTTTTTCGAACACCACCCGCTCGTT 96242 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 96181 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 96120 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 96059 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 95998 29 100.0 32 ............................. TACCGCTGTTCATGCCGGAAATTGACCGGACC 95937 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 95876 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 95815 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 95754 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 95693 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 95632 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 95571 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 95510 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 95449 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 95388 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 95327 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 95266 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 95205 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 95144 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 95083 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 95022 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 94961 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 200477-201359 **** Predicted by CRISPRDetect 2.4 *** >NZ_PQEV02000008.1 Escherichia coli strain ECPET13 8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 200477 29 100.0 32 ............................. CAATTCCCGCAGCGCCTGCCGCAGTATTCACC 200538 29 100.0 32 ............................. TTGAACGATTTTGACCTGCGCCGTTTTGAGTC 200599 29 100.0 32 ............................. CTGACGCAACGATTGACCGTGCCGCCGGGTTG 200660 29 100.0 32 ............................. CTGACGCAACGATTGACCGTGCCGCCGGGTTG 200721 29 100.0 32 ............................. CCGCCGTTATATGGAGCGATTCCGGTTTGGTA 200782 29 100.0 32 ............................. CGAATTTTGCACACTACGTCGCTGAGGGTAAA 200843 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 200904 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 200965 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 201026 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 201087 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 201148 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 201209 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 201270 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 201331 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //