Array 1 474625-474270 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJHL01000010.1 Clostridium baratii strain 693-15 contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 474624 29 100.0 36 ............................. TAGCAAGAGCAGTTCCTCCAAGTTCACCAGCCATTG 474559 29 100.0 36 ............................. ATAGTAGATATAACCCCAGGTTTTCTGCTAGATTAT 474494 29 100.0 36 ............................. CACATAGATACACTTTATTATACTGTCTCGCTTGAA 474429 29 100.0 36 ............................. GTTGATGACTTGCAAGGAGATCCGTGTTTCTTTATG 474364 29 100.0 37 ............................. TTTAAAGATGGAGGTCTTAAAGATAAGCAAGTAAGAA 474298 29 79.3 0 .T.....T...........TGCG...... | ========== ====== ====== ====== ============================= ===================================== ================== 6 29 96.5 36 GCTTTATCTTAACTATGAGGAATGTAAAT # Left flank : TGAGTGTATAGATAAATTAAAAGATATAAACATAATAAAACTAGAAAAAATCAAAATACGAGATACACTTAAAAGTTTTACAGTATCAGTAGGAAAATATGACTTAGAGGTTTTAGGAAAATCAGCATTATATAAAGAAATAGAAATAAGTGAATATGAGAAAATTCCAGTTATAAAATGTGAATATGGAGAATTAGGGTTTATAAGAAGCAAAGTTGAAGATAATAATATATATGATAATTTTTTATAATAAAATTAAGTTTAAGTATTTAGTAGATTAAATGATAAATTAATGATAATATTATAATAATATATTAATTTGCAGTCAATCTAAAAATAATAAGAAGCTAGCTAAAGCTAGTAAAATCAATAAGTGAGCAACACATTTGCTTGGTAGTGAAATTTAATACTAACGGTTTACTGCAAAAGAGATTAGAATAAATGAAAAATGATACTTACAAATGGCTTGAAATGGTGACAAATACTTGTCTATTTTTGGG # Right flank : TTAAGATGATGTTGATTCTAAATCAGTCACGCTCAAAATTAACTTAATTATATTAATGTTGATAAATTATAGTATTAGAAGATAGGGAAGTAGCTATAAAATAGCACTTCCTTTTTCTATATGCTAAAATATGTATATAAAAAAGAAAAGGAGAAAATCCATGAGTTGTATATTTTGTGAGTACAGTAAAGAAGAATATATAGCAGAAAATGATTTATGTTTTGCTATTTTTGATAAATTCCCTGTTAATGAAGGACATGCTCTTATTATTCCTAAGAGACATTTCCAAAATTACTTTGATGCAACAAAAGAAGAGATTGCAGCAATGTATGATTTATCACAAGAAGTTAAACAATTAATTGATAATAAATACAGTCCAGACGGATACAATATTGGAGTTAATGTTAACCATGAAGGAGGTCAAACTATTATGCACCTTCATATGCACATTATTCCAAGATATAAAGGTGATATAGAAGATCCTAGAGGTGGTATTAGAA # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTTATCTTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 483523-481776 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJHL01000010.1 Clostridium baratii strain 693-15 contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================================================================================================================= ================== 483522 29 100.0 36 ............................. AAAAAATAAAATAGGCTTATCATATTGTTTAGAAAC 483457 29 100.0 37 ............................. TTAGTTAAATACAACCTCTAGGACTTCCCCAAATCTA 483391 29 100.0 37 ............................. TTGTGTATCTTTATTAAGAACTCATTGTTATAATCCA 483325 29 100.0 38 ............................. GAAGTTTGTATAGTATCGAGAGAGGGGCTAAAGCCCCA 483258 29 100.0 37 ............................. TATCTTGTTGTACAAAAGAAGTTTTTTTCATTCTATA 483192 29 100.0 36 ............................. CAAAGATTATGCTAGAAAAATAGCAAAAGCTTCATT 483127 29 100.0 37 ............................. GTAAATACTACTATAACTACTCCTTTAGAACTTCCAA 483061 29 100.0 37 ............................. CATAATTCCATTCTAAAGTTGAACTTTGTACTTGCTT 482995 29 100.0 37 ............................. ATTAGTTTTCCTTTCTTAACTTTATCTTTAAATAGAT 482929 29 100.0 37 ............................. TATGAAGAGTTTTATAAATGGGCTAATGAAATGGCTA 482863 29 100.0 38 ............................. TTCTCAATAGCGTTAAAACAATTTAAAGATTTTTATGA 482796 29 100.0 35 ............................. AAATTTAATATTGGGAGAATTTTATGATTAGAGTT 482732 29 100.0 36 ............................. CTACGTTACGTTACTGTTCCAGTTGCTCTTTGTGAT 482667 29 100.0 36 ............................. CTACGTTACGTTACTGTTCCAGTTGCTCTTTGTGAT 482602 29 100.0 38 ............................. AAAGGTATTAAATAATCATAAAAAAATTCCATAATAAA 482535 29 100.0 37 ............................. TAAGCTAAATCTGAGCTAATTGTATTACAAGAATCCG 482469 29 100.0 36 ............................. AGGATATTATTAGTCACACCAACAGGGAAAAGTAAG 482404 29 100.0 37 ............................. GATGAAAAAGTATTAGTTGGTGAAGGATTATTGAATA 482338 29 100.0 36 ............................. GAACTAAGACAGTATGGATTAGAATATGAGGAAATA 482273 29 100.0 37 ............................. TGACAATACTATAAAAGAAGTATTTAACAGAACTATT 482207 29 100.0 36 ............................. TGAAATAATACAATTTAATCTAGTTCTTATCGCTTT 482142 29 100.0 37 ............................. TATGAAGAGTTTTATAAATGGGCTAATGAAATGGCTA 482076 29 100.0 185 ............................. GAACCTACACTAGTACCAACAGAATATCGTAACTAAGAATAATATAAGTTAACATAATATCCATATTCTTATTTAGATTAGTTATGTTTTATATTAATTATATTTAAAAAACTTTTATGTGAAGGTTTATTATAAAAATTATTGGAAAGAATTATTTGATGACTAATTTTTTATGATTTATAATA 481862 29 89.7 28 A......C.........A........... TATATAAAATATAAAATAATAGAAAAAA Deletion [481806] 481805 29 82.8 0 .......C........AA.....T....G | T [481779] ========== ====== ====== ====== ============================= ========================================================================================================================================================================================= ================== 25 29 98.9 43 GTTTTATATTAACTATGTGGAATGTAAAT # Left flank : AAGAATATAGACCTTTAAAGGCGTGGTGGTAAAATGTTTGTTATAATTACTTATGATATAAAAATTCAGAGAATAAATAGAGTTAGAAAATTATTAAGAATGTATTTAACGTGGACTCAAAATTCCGTTTTTGAAGGAAAGATAACAGAGTCTAAGCTTCAAAAATGTTTAAACGAAGTTAATAGCCTTATCGATAGAAAAGAAGATTCTATTTATGTATATAGAGTTCAAAATGAAAAAAATATAAAGAAAGACGTTATTGGAGAAGAAAAGAATTTTGATGAATTATTTATTTGATAGTATAATAAAAATATGAGATTTGCAGTAAACCGTAAAAATGATTAGATTGAGCAGAAGCCTTTAAAAATCAAGGATAGAGGTATGTTGTATACAAATTAAAAAAATAAGACTGAAGGTTTACTGCATTTGCTGGGATTATTTTTAGAAAAAATAGTCTATAAATGGCTTAAAATGGTCAAAAAGAGCTTATTAATTTTGGG # Right flank : TGCTGAAAATAATATTTCAGCACTTTATTTTTTATTACAAGTATTTCAAGTAAATTATAAGAAAATGTAATATATATTATTATAAAACTAAAAATAAACAATAATAAACAAATTTTAGGCTTATTTTGAATTTTTAAATTATAATAATTTGAAATATAATAAATTTATTATTTTATATTTAATATAAGGATGATAATATGTATGATATCTAATGAAAAGAAAAATAAGATAATAGAAAGGTTTAAAAATAATGATGATAAAAATATGTCTAAAATTGCTAGGAGACTTAATGTTTCCAGAACTTTTGTTTAGAAGTTATTAAAAGAAAATGGATTGATATAATATCTTGAATAGGTTTAAGTATTAATTTGAAAATTAACTCAATGTTTAATAAAAGTTTATTGAAAGAATAAATTTAAATTCATAATGATGAACTTTTATTATTATGAATTTAAATTTTGCAAAAATATTTTGATTTTAAAATTATTTATTAAATTTTT # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.59, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //