Array 1 922138-923203 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP074233.1 Salmonella bongori CFSAN000510 strain SGSC 3100 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 922138 29 100.0 32 ............................. CGGCAACCGACCCATCTGGAGGTACTGAAAAT 922199 29 100.0 32 ............................. GGCGGATACCGCTAATAAAATGCTAAAACAGC 922260 29 100.0 32 ............................. GCCATTAACCGTGCGTTGCGTCAGGTTGATCC 922321 29 100.0 32 ............................. TCTAATCAGTATAATGAAGAGACTTTAATTAA 922382 29 100.0 32 ............................. ACAATTCAGGACGTGCTGATTTCTGGGCTGGT 922443 29 100.0 32 ............................. TTATTCCTGAAAATCCTAATCTTCTATTTGTA 922504 29 100.0 32 ............................. AGTCATAAAATTCGGCGCATACGATAACTTTT 922565 29 100.0 32 ............................. AGCGAGTTCATTATAAATATCATGGTTGCCGC 922626 29 100.0 32 ............................. TACCCACGCGCAGCACGCCAATTTACGTAGTT 922687 29 100.0 32 ............................. GTTCGCCCTCGGCCAGCGTGTAAAACTTGATT 922748 29 100.0 32 ............................. CCAATAATTAAACGTTGCATTTGTTGCTTCGG 922809 29 100.0 32 ............................. TTTTTTTTGTTTTATCAGGGCTACGCTATAAA 922870 29 100.0 32 ............................. GAATATCACATGAAATGTCAGGAACGCCTTTT 922931 29 100.0 32 ............................. ATGTACGCCAAATTTTCGCAAGTCATCGATCA 922992 29 100.0 32 ............................. GAAACAGTTACGCATCCGCTGTTTCCTGCTGG 923053 29 100.0 32 ............................. CTTCCGGATCATCCTTTGGTAACGGCTCTGAC 923114 29 100.0 32 ............................. GCAGATGAAAAATACTGCGGTTGGGTGCCCTC 923175 29 96.6 0 ..........................T.. | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCGAATGAAATCAAGCATCCGGTTGGACGAGTACGTGATATTGAGGCGCTGGATGAGTTGTTAGCCACGTTGAGCGACGATAAACCGAGAGTGATTGCTTTGCAGCCTATCAGCCAAAAAGAAGACGCGACGCGTCTGTGTATTGATACGTGCATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAGTATTTAAATATCGCCTGATATGCTGTCCGTTCTACGGATGGCCTGTCGTCGTGTGTAATTTACCTATCATCTTGCGTTCGCTATTTCTCCAAAAAATTCGAGGAATGTATAAAGTAGCTGAATAATTTTCCATAGCGAGACATGGATCACACTATTCTGGTGAGTTTAAAGAAAAAATCGTTCACTGAATTTTTTTGTATCAAAATCAGCTGATTAGATGTTCTTTAAGAATTTAAATTTGTTGCAATTATGTTGGTAGGATGTGGCGTTGATAAAAAACACTGAATAAACAATTAGGTATATTTAGT # Right flank : GTTCCATAACCATAATCTGCGTACCAGTAATCGTTCGTACCAAACAGTAAAGTAAAAAGAACCGTGTTTTGTGGGGGATAAAGGAGAGGGTGATGGCGTTAACGATTAAGGTATTGCTCGAAAATCATAAAGCCGCTGGTGTGGATAACGCTTTGAAGGCCAGGCCAGGATTAAGCTTATTAGTTCAGGATGAATCTACTTCGATATTATTCGATACCGGACCTGACGACAGTTTTCTACAAAATGCGTCGACAATGAGGATCGACCTGTCTGATATATCTGCGGTGGTGCTTTCACATGGACATTATGATCACTGCGGCGGCGTACCGTGGCTTCCTGATAATAGCCGAATCATCTGTCATCCAGAAATGGCGCGTGAACGTTATGCGGCAATAACGCTTCCTGGTATGACCCGCAAAATAAAAAAATTATCGCGAGAAGGGGACTATTCACGTTACCGAATGGTGTACACGCGCGACCCCATGCCAATTAGCGACAAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 939185-940434 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP074233.1 Salmonella bongori CFSAN000510 strain SGSC 3100 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 939185 29 100.0 32 ............................. AGACATCAGACCACCGCGAGCCAGGAACACGG 939246 29 96.6 32 ............................C GGGTATACGTTACACCGGGCAAATGTGGTACA 939307 29 100.0 32 ............................. GGGGGATGGAGGTGCTAGACCCACAGTTTTAG 939368 29 100.0 32 ............................. TTGGGCGACTCCAACGTTATAAAAATCAAAAA 939429 29 100.0 32 ............................. AATAATAGATTTATTAAGTGCGGGAGAAATTA 939490 29 100.0 32 ............................. TAATTCCTGTTTCCGTCATTAGCTGGCATAGA 939551 29 100.0 32 ............................. CATATAGTCATCTTACGCTAACAACTTGTTAA 939612 29 100.0 32 ............................. GATATATTCAGCGATATACTAACGGAATTAAT 939673 29 100.0 32 ............................. CGTTTCTCAATGGTGGGATGGCGCAAATGAAC 939734 29 100.0 32 ............................. CGGCAAACAAAATAGCGATTCACGGTAATACG 939795 29 100.0 32 ............................. GGAGTTGCAGCTACAATTGTTGGTAGCAAGGA 939856 29 100.0 32 ............................. GACATAACCGGGTTTTGCCGACACAAGGGGTT 939917 29 100.0 32 ............................. TTACGCTGTGTAAAATACGGGGTGCATTCTAG 939978 29 96.6 32 ............G................ TACAGGTTGCCATCGGCCCCCATTCCAGCCAA 940039 29 100.0 32 ............................. GAATCCAGTTGCCGTTTAAATCAATTCGCGCC 940100 29 100.0 32 ............................. CACTACCCGTCTGAGGCCTGGACGATTATCCA 940161 29 100.0 32 ............................. AATTCAATACGGAGGGGTGTCAATGGATATCA 940222 29 100.0 32 ............................. CGTATGGAGAGATTGGCAAAGATTTAGGGTAG 940283 29 96.6 32 ................A............ GTCAGAATGACGAATTTCCCTGAATTATCAGA 940344 29 100.0 32 ............................. CAATGACCTCCCACCATAGTACCAATACCAGC 940405 29 86.2 0 .....................C.TT..T. | T [940430] ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGGCCGCCGGAGAAATTGAACCGCCTCAACCCGCGCCGGATATGCTGCCGCCCGCGATACCGGAGCCGGAATCTCTGGGTGACAGTGGGCATCGGGGGCATAGTTAATGAGCATGATGGTGGTGGCAACTGAAAACGTACCGCCGCGTCTGCGAGGGCGGCTTGCCATATGGTTACTGGAGATTCGTGCGGGCGTTTATGTTGGCGATACCTCAAAACGCATTCGGGAGATGATCTGGCAACAGATAACACAATTGGGTGGAGAGGGAAACGTAGTAATGGCCTGGGCAACAAATACGGAGTCTGGTTTTGAATTTCAGACCTGGGGGGAAAACCGCCGTATTCCGGTAGATGTAGATGGGCTCAGGCTGGTTTCCTTTCTTCCTATTCAAAATCAATAAGTTGAAGGCTCTTTAATAATAAGGAATTGTTGCTTTAGCGTTGGTAGGTTGTTATTAAGCCAAAAAACGTTTTTAGAACAATTACATAGATTTAGA # Right flank : GGATGTTCTGACACGTGGAGTGGTGAAATTGACTATCTGTCAATAAGACAACACGATGGACCATAATCATGGCTGCCGTCCGTATTGCTGAAATATCTCTTTATATACTGCGGGGCGCAGATACGTCCCGCGCCAGTATGACTATTTGGGTTGGATGGGCGCCGCCTTTGCCAACTCTTTTACCAGTGGCAGCATTATCCGCACCACGTCGCGGCTACGGCGCTCAATTCGCCCAGGTAAGGCTTTATCGATATGCTGTTGATTATCCAGCCGTACATTGTGCCAGCTATTGCCATCCGGAAAAGAGGCATTTTTCGCTCTTTGCTGGTATCCATCTTTTTTACCCAGACTCCAGTTCGTCGCTTCAACGGAAAGCACAGAAATCCCGGCGTCATCGAAAACTTCCGCATCATTACAGCAGCCAGTTCCTTTAGGATACGCCGGATTGAGTCCCGGATTCGTGCTGGCGGCGATACCATGTTGACGCGCGATGGCTAATG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //