Array 1 6773-5417 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTJO010000003.1 Listeria welshimeri strain FSL W9-0606 NODE_3_length_462631_cov_185.714072, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6772 36 100.0 30 .................................... TTACATTTTTGGTTATACATTGGCTTTTTA 6706 36 100.0 30 .................................... TTCTATTAAAATACTTAACATTAAATACTA 6640 36 100.0 30 .................................... TTGGAACATTGAGCGCATTGAGGCAATTCA 6574 36 100.0 30 .................................... GGTACTTTTCCTTCACTACGCAATTTCGTT 6508 36 100.0 30 .................................... CGGCTCGCTGACATTCGGATTGAGATGCAC 6442 36 100.0 30 .................................... AATCACTAGGTGATATTGCCATTTCTTCCA 6376 36 100.0 30 .................................... TAAAGCCGCACCTGCTAGACCAATGACAGC 6310 36 100.0 30 .................................... AGAAAAGCAAAGATTTTATACAGGTTAGTG 6244 36 100.0 30 .................................... CGCTTCTATTGATCGTCACACGTGGGTTTC 6178 36 100.0 30 .................................... AAAATCGGCGACACACTAACCTATTTTGGT 6112 36 100.0 30 .................................... ACCATCCCATATCTGGATGAAGGGTGGACG 6046 36 100.0 30 .................................... TCACAAATGGAGTAGAAAATGGTACGTATG 5980 36 100.0 30 .................................... ATGCAACTTGCTAAATACGAGGAAATGAAA 5914 36 100.0 30 .................................... TAACGTTAGGAATTTCTATAGGTGCTCCTT 5848 36 100.0 30 .................................... ATTCCTCTTTAGACTTACCTGTTACAATAA 5782 36 100.0 30 .................................... ACATTTATTGTCACCTCCACATCTTCCCAG 5716 36 100.0 30 .................................... TATCGTAAATGCAGAAAACACGAAAGCTGT 5650 36 100.0 30 .................................... GAATAAAGATTGGGATAAATTAGTTGCACT 5584 36 100.0 30 .................................... CACTAGTGTACCTCGAACACCACGAAGAGC 5518 36 100.0 27 .................................... GAATATTCTCCCCCATCGCTAACAGGG 5455 36 83.3 0 ............CA.....C.....A.A.......G | C,A,T [5420,5423,5428] ========== ====== ====== ====== ==================================== ============================== ================== 21 36 99.2 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTTCGCAAGTTACTTTAGATTCTGATTATTTTTTACACGTAGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACAAAACATGGTTAAATTTAAAAAGGAGTTAGGTATCTATATGACACAGTATCACTATCTTACTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTTCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATTTCAACTTGCTGTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATTGGCAAAAAAATTGTTACGAGACTTAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGTTAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAGGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAATTATTAATAATTAGAAATGAAAACCGATATAACTTTTAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 1158778-1157204 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTJO010000001.1 Listeria welshimeri strain FSL W9-0606 NODE_1_length_1464869_cov_137.177577, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1158777 29 100.0 36 ............................. TCGGAAATCAAGTACAGCATTGGTTCTACCTGGATT 1158712 29 100.0 35 ............................. AAAGCAAAAGCGGGAAACTAATGGCGGCGCGGTCG 1158648 29 100.0 36 ............................. GAACGATTAGAGAATGATGACTATTCAGGTTGGAGC 1158583 29 100.0 35 ............................. ACTTTTAACGTAATAGTCGCCTTGTCCACTTCGAC 1158519 29 100.0 36 ............................. TTCAATAGTAACTTGTTCACCGTCGATATAAATTTT 1158454 29 96.6 35 .........................G... TTAATTGCGTTTTCACGTAATCAGGTTGCCCCGAC 1158390 29 100.0 34 ............................. GTGGTTGTTGATGATCTTTGGGACGATGATTTTA 1158327 29 100.0 36 ............................. ATTATTTTGCACAATTGCTTTTGCTATCATTTGCCA 1158262 29 100.0 37 ............................. GGTGAATACAAGGAACTAAAACCAGTTCCGTTTACAC 1158196 29 100.0 35 ............................. GAAAATATTAACCCTGTTGTTCAAGAGGTGCAAGA 1158132 29 100.0 33 ............................. TTTTTGTTAAAGCCCAAAACGGTTGAACTTCTT 1158070 29 100.0 35 ............................. ATGTCTAACATGGTTTGCCTGCGCAAAGTAGCAAA 1158006 29 100.0 35 ............................. CGATCAATCCGAGCAAATAAAACATTTGGATCAGA 1157942 29 100.0 35 ............................. GAACCATCCAGAAATGTTGCTAATGCCCCCAAAAC 1157878 29 100.0 36 ............................. CTTAATTTGAAACAAAATGGCAAAAAATGCGGAATG 1157813 29 100.0 34 ............................. TCCTGTATAAGTCTCTTCAAAGTCATTCAGCAAT 1157750 29 100.0 35 ............................. TAATTATTGGGGAATTTGTATAATATCTGTTTGTT 1157686 29 100.0 37 ............................. GAATTTGTGCTACAAGAAAGCTTTCGGAAAAATGGAA 1157620 29 100.0 37 ............................. ACAGACCTAGACAGACTATCAAAAGATTGTTGCTGTT 1157554 29 100.0 34 ............................. CTTCAAGGAAAAGTAGTTGCAGAAAGCTATGTAA 1157491 29 100.0 34 ............................. TAATAAGCATTATAGGAGCTTCAATTAGCATCGG 1157428 29 100.0 36 ............................. ACATCTTTGAAAATTTCTGTTTCGTTTTTGTCTATG 1157363 29 96.6 37 ..................A.......... CAGCTACGTACTCCTACTTTTTTGTTTAATGAGTTTG 1157297 29 93.1 36 ................A.A.......... AGCGTAGTATCTTGTGAGTAAATACTTGCTAGTTTC 1157232 29 89.7 0 ................A......C....C | ========== ====== ====== ====== ============================= ===================================== ================== 25 29 99.0 35 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAATATATGTATGTAATTTTAATTTATGATATTTCAATAGAAAATGGTGGAGCGAAAGTTTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAGGGTGAAATAACACCTGCTCTTTTAGTGAAACTAAGAATGGAGTTAGATAAGTATATTCGAGATGACCAAGATTCAGTAATTGTATTTTCTAGTAGACAGCAAAAGTGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAAACTTCTAACTTCTTTTGATGTTCTCAATCTGTCGACCCTTAGTAGTGCGAAAAATAGTAGGGTTCGACAGATTGACGGAGATGACTGGGGGAGAAAGATTTTAAAGGTTTTTAGTGAATATCCGAAGAAATAAGTTATAATTTTTATGCGATTTTTCAGAGGTCGACAAAAATAGTGCCCTGAGGTATGATGGGAGTAGGAGTAAAAAAGGGCGG # Right flank : TCCTTCCCTCAACAATACACCCCCCAAAATAAAAAAATGGACCTCAACCTCAGTCCAAATCTTTTTCAATACTACCTAAACCAACAAAACCGCAATCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATTCCCTTAGAAGAAGTCGCACCGCCAAACAGCGCCGCCACAACCACACAACTTAAAAAGAAAATCTGCACAGTTTCAGCCATCTCTGCTCCAGCGAAAAACAATCCCCACACAAGTCCTGCTGCAAGAAATCCATTATAAAGCCCTTGATTCGCAAACAGCGTCTGGACTTTCTTATTCGCAAGTAGTTCCTTCTCTACACCGAACGTCCTCGATGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCTATCATAACGATGAAAGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //